Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00367 * 2 1 4 4 H 1.48493 * 109.47145 * 269.99885 * 3 2 1 5 5 H 1.48508 * 109.46729 * 30.00029 * 3 2 1 6 6 H 1.48499 * 109.46994 * 149.99834 * 3 2 1 7 7 C 1.37876 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00209 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00207 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47007 * 185.07844 * 9 7 2 11 11 C 1.46893 * 111.00195 * 295.03538 * 10 9 7 12 12 C 1.53243 * 109.33973 * 187.25607 * 11 10 9 13 13 N 1.47078 * 108.52154 * 306.16724 * 12 11 10 14 14 C 1.34774 * 120.88264 * 230.91300 * 13 12 11 15 15 O 1.21579 * 120.00182 * 354.97251 * 14 13 12 16 16 C 1.47582 * 119.99955 * 174.97083 * 14 13 12 17 17 C 1.39656 * 120.19131 * 300.75760 * 16 14 13 18 18 C 1.37833 * 119.91247 * 179.97438 * 17 16 14 19 19 C 1.38527 * 120.31396 * 359.97438 * 18 17 16 20 20 C 1.38072 * 120.39117 * 0.02580 * 19 18 17 21 21 C 1.38766 * 120.07496 * 359.69447 * 20 19 18 22 22 N 1.39665 * 120.15673 * 180.27850 * 21 20 19 23 23 C 1.36656 * 125.67581 * 122.81039 * 22 21 20 24 24 C 1.34811 * 108.18943 * 179.86941 * 23 22 21 25 25 C 1.40993 * 107.48577 * 0.39533 * 24 23 22 26 26 C 1.34802 * 107.48813 * 359.75101 * 25 24 23 27 27 C 1.47082 * 118.23632 * 51.18191 * 13 12 11 28 28 C 1.46898 * 110.99966 * 59.33740 * 10 9 7 29 29 H 0.97003 * 119.99629 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46959 * 65.07937 * 9 7 2 31 31 H 1.08997 * 109.47143 * 305.08124 * 9 7 2 32 32 H 1.08997 * 109.50004 * 67.29578 * 11 10 9 33 33 H 1.09008 * 109.49540 * 307.21119 * 11 10 9 34 34 H 1.09002 * 109.63094 * 186.45892 * 12 11 10 35 35 H 1.09000 * 109.63074 * 65.87459 * 12 11 10 36 36 H 1.07995 * 120.04672 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.83913 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.80681 * 179.97438 * 19 18 17 39 39 H 1.08001 * 119.95839 * 179.97438 * 20 19 18 40 40 H 1.07991 * 125.90459 * 0.02562 * 23 22 21 41 41 H 1.07993 * 126.25395 * 180.14390 * 24 23 22 42 42 H 1.07997 * 126.25638 * 179.74238 * 25 24 23 43 43 H 1.08003 * 125.90521 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.62483 * 68.52577 * 27 13 12 45 45 H 1.08995 * 109.62935 * 189.10626 * 27 13 12 46 46 H 1.08997 * 109.49488 * 292.70316 * 28 10 9 47 47 H 1.09004 * 109.49166 * 52.78540 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5736 -0.1233 11 6 3.6290 -3.3714 1.0526 12 6 4.3080 -4.7428 0.9710 13 7 3.9747 -5.3528 -0.3252 14 6 3.4883 -6.6078 -0.3945 15 8 3.4054 -7.2841 0.6125 16 6 3.0563 -7.1611 -1.6926 17 6 2.0456 -6.5320 -2.4228 18 6 1.6470 -7.0535 -3.6349 19 6 2.2446 -8.1994 -4.1336 20 6 3.2450 -8.8316 -3.4223 21 6 3.6629 -8.3174 -2.2031 22 7 4.6787 -8.9522 -1.4849 23 6 5.8503 -8.3754 -1.0822 24 6 6.5682 -9.3018 -0.4160 25 6 5.8196 -10.4966 -0.4134 26 6 4.6692 -10.2553 -1.0733 27 6 4.1920 -4.5590 -1.5442 28 6 3.5176 -3.1949 -1.3635 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.7617 0.9325 31 1 3.8752 -0.6030 -0.8404 32 1 2.5471 -3.5021 1.0760 33 1 3.9535 -2.8583 1.9579 34 1 3.9465 -5.3791 1.7788 35 1 5.3883 -4.6219 1.0518 36 1 1.5776 -5.6378 -2.0388 37 1 0.8650 -6.5663 -4.1984 38 1 1.9256 -8.6011 -5.0839 39 1 3.7058 -9.7249 -3.8175 40 1 6.1483 -7.3535 -1.2638 41 1 7.5408 -9.1565 0.0303 42 1 6.1141 -11.4338 0.0352 43 1 3.8771 -10.9686 -1.2470 44 1 5.2611 -4.4204 -1.7051 45 1 3.7539 -5.0737 -2.3992 46 1 2.4373 -3.3280 -1.3065 47 1 3.7614 -2.5536 -2.2106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828517296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = 52.392008 kcal Electronic energy + Delta-G solvation = -29852.919258 eV Core-core repulsion = 26001.423374 eV Total energy + Delta-G solvation = -3851.495883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69361 -41.29970 -39.68916 -38.91168 -36.11570 -34.40184 -34.17677 -32.98523 -31.75941 -30.44295 -29.82877 -29.77221 -27.41829 -25.27474 -24.54719 -24.04297 -23.60215 -22.14574 -21.28172 -21.06946 -20.36714 -19.27510 -18.87893 -18.46082 -17.51853 -17.02681 -16.56372 -16.37404 -16.09444 -15.83352 -15.81512 -15.60005 -15.23706 -14.94016 -14.72916 -14.53052 -14.48225 -14.45277 -14.08611 -13.80311 -13.56340 -13.25505 -13.10631 -13.06402 -13.02548 -12.95351 -12.54668 -12.46544 -12.26956 -12.22473 -11.98325 -11.88149 -11.67959 -11.11061 -10.80503 -10.45769 -10.13009 -9.85762 -9.37262 -9.15914 -9.08316 -8.33379 -6.39506 -0.26993 0.03693 1.28260 1.35888 1.38263 1.46699 1.49618 1.79731 1.93481 2.09503 2.32777 2.50080 3.02290 3.17180 3.25284 3.67211 3.89134 3.93230 3.99169 4.00077 4.15226 4.21853 4.23733 4.25051 4.27645 4.41429 4.47661 4.51788 4.58514 4.67003 4.69425 4.78973 4.81233 4.94905 5.00085 5.04988 5.05404 5.12719 5.18517 5.30109 5.31360 5.32672 5.35535 5.45191 5.66130 5.98256 5.99248 6.19878 6.21820 6.27276 6.30144 6.50721 6.66931 6.91723 7.27994 8.82839 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.003150 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.893268 B = 8885.604601 C = 9856.962363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.245 1.245 7 C -0.551 4.551 8 H 0.030 0.970 9 C 0.162 3.838 10 N -0.524 5.524 11 C 0.055 3.945 12 C 0.127 3.873 13 N -0.600 5.600 14 C 0.558 3.442 15 O -0.569 6.569 16 C -0.140 4.140 17 C -0.086 4.086 18 C -0.108 4.108 19 C -0.070 4.070 20 C -0.114 4.114 21 C 0.139 3.861 22 N -0.408 5.408 23 C -0.021 4.021 24 C -0.205 4.205 25 C -0.206 4.206 26 C -0.013 4.013 27 C 0.117 3.883 28 C 0.052 3.948 29 H 0.266 0.734 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.007 0.993 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.180 0.820 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.016 0.984 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.379 -17.686 -11.006 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.590 4.590 8 H 0.048 0.952 9 C 0.034 3.966 10 N -0.247 5.247 11 C -0.074 4.074 12 C 0.005 3.995 13 N -0.332 5.332 14 C 0.347 3.653 15 O -0.449 6.449 16 C -0.144 4.144 17 C -0.105 4.105 18 C -0.125 4.125 19 C -0.088 4.088 20 C -0.133 4.133 21 C 0.048 3.952 22 N -0.081 5.081 23 C -0.148 4.148 24 C -0.229 4.229 25 C -0.230 4.230 26 C -0.140 4.140 27 C -0.006 4.006 28 C -0.077 4.077 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.025 0.975 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.180 0.820 38 H 0.194 0.806 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.167 0.833 42 H 0.174 0.826 43 H 0.198 0.802 44 H 0.112 0.888 45 H 0.119 0.881 46 H 0.034 0.966 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.496 -17.754 -10.642 23.209 hybrid contribution -1.348 1.196 0.738 1.947 sum 9.148 -16.559 -9.905 21.354 Atomic orbital electron populations 1.70084 1.08471 1.28205 1.52018 1.25931 0.95475 1.03496 0.93733 0.85659 0.79463 0.78131 0.79365 1.18802 1.21514 1.16805 1.21864 0.92765 0.92979 1.51357 0.95187 1.20071 0.91699 0.87434 0.97379 1.62440 1.57666 1.02762 1.01821 1.22234 0.96712 0.93516 0.94973 1.21697 1.00816 0.92137 0.84881 1.48193 1.62656 1.13330 1.09012 1.18546 0.76702 0.81258 0.88833 1.90770 1.56557 1.59690 1.37910 1.19894 1.00819 0.98516 0.95202 1.21298 0.94940 0.99144 0.95167 1.21575 1.00175 0.96328 0.94464 1.21664 0.93053 0.93596 1.00520 1.21400 0.98794 1.01736 0.91410 1.17830 0.91154 0.93281 0.92969 1.41424 1.13563 1.10253 1.42865 1.21984 0.87498 0.99644 1.05678 1.21186 1.02025 0.94034 1.05648 1.21212 0.95653 0.99857 1.06311 1.22305 1.01709 0.85198 1.04807 1.22105 1.02158 0.90098 0.86198 1.22280 0.96659 0.95025 0.93765 0.92537 0.95086 0.94290 0.97483 0.89593 0.90355 0.88942 0.85957 0.81987 0.80565 0.82604 0.82720 0.83317 0.82627 0.80244 0.88837 0.88123 0.96586 0.89072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.81 13.96 21.45 0.30 -57.51 16 2 C 0.01 0.66 5.47 84.66 0.46 1.13 16 3 Si 0.95 42.20 27.37 68.60 1.88 44.08 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -10.03 6.69 99.48 0.67 -9.37 16 7 C -0.55 -30.02 8.30 25.60 0.21 -29.81 16 8 H 0.03 1.86 6.13 -2.91 -0.02 1.84 16 9 C 0.16 7.19 4.18 85.56 0.36 7.55 16 10 N -0.52 -19.98 4.83 -899.82 -4.35 -24.32 16 11 C 0.05 2.08 5.24 86.39 0.45 2.53 16 12 C 0.13 4.14 6.58 86.35 0.57 4.70 16 13 N -0.60 -18.94 3.01 -821.64 -2.47 -21.41 16 14 C 0.56 18.92 5.60 86.71 0.49 19.40 16 15 O -0.57 -23.61 16.33 -3.96 -0.06 -23.67 16 16 C -0.14 -3.84 4.62 -19.99 -0.09 -3.93 16 17 C -0.09 -2.02 7.75 22.52 0.17 -1.84 16 18 C -0.11 -1.67 10.02 22.24 0.22 -1.45 16 19 C -0.07 -0.84 10.03 22.30 0.22 -0.61 16 20 C -0.11 -1.84 9.77 22.36 0.22 -1.62 16 21 C 0.14 3.33 5.86 38.50 0.23 3.56 16 22 N -0.41 -10.62 2.42 -345.94 -0.84 -11.46 16 23 C -0.02 -0.56 9.96 83.15 0.83 0.26 16 24 C -0.20 -5.18 10.86 22.16 0.24 -4.94 16 25 C -0.21 -4.88 10.86 22.16 0.24 -4.64 16 26 C -0.01 -0.32 11.22 83.15 0.93 0.61 16 27 C 0.12 3.16 6.31 86.35 0.54 3.71 16 28 C 0.05 1.79 5.15 86.38 0.44 2.23 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 30 H 0.03 1.38 7.48 -2.39 -0.02 1.37 16 31 H 0.04 1.67 7.29 -2.39 -0.02 1.65 16 32 H 0.01 0.31 6.92 -2.39 -0.02 0.30 16 33 H 0.09 3.10 8.05 -2.38 -0.02 3.08 16 34 H 0.08 2.73 7.10 -2.39 -0.02 2.71 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.12 3.24 8.05 -2.91 -0.02 3.22 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.18 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.16 3.97 8.06 -2.92 -0.02 3.94 16 41 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.10 2.38 5.06 -2.39 -0.01 2.37 16 46 H 0.02 0.66 6.79 -2.39 -0.02 0.64 16 47 H 0.09 2.92 8.11 -2.38 -0.02 2.91 16 Total: -1.00 -74.77 378.56 2.13 -72.64 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.93 Total: 24.81 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.74 Total: -3.16 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.35 Total: -114.69 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Total: -74.77 2.13 -72.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828517296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.028 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds