Wall clock time and date at job start Tue Mar 31 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99900 * 2 1 4 4 H 1.48501 * 109.46878 * 269.99614 * 3 2 1 5 5 H 1.48500 * 109.47311 * 29.99825 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99713 * 3 2 1 7 7 C 1.37870 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00543 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.50216 * 60.07550 * 9 7 2 11 11 C 1.53122 * 109.50038 * 299.99868 * 9 7 2 12 12 C 1.53119 * 109.16116 * 182.40261 * 11 9 7 13 13 C 1.53034 * 109.27916 * 57.65476 * 12 11 9 14 14 N 1.46846 * 109.52419 * 300.82336 * 13 12 11 15 15 C 1.46895 * 111.00192 * 185.83797 * 14 13 12 16 16 N 1.46499 * 109.47507 * 81.04779 * 15 14 13 17 17 N 1.28389 * 119.10662 * 284.98197 * 16 15 14 18 18 C 1.31216 * 122.30413 * 179.97438 * 17 16 15 19 19 C 1.48347 * 119.87811 * 179.97438 * 18 17 16 20 20 C 1.39363 * 120.12002 * 179.72753 * 19 18 17 21 21 C 1.38018 * 119.87281 * 179.69823 * 20 19 18 22 22 C 1.38328 * 120.12090 * 0.60076 * 21 20 19 23 23 C 1.38326 * 120.24965 * 359.66968 * 22 21 20 24 24 C 1.38011 * 120.12303 * 0.02756 * 23 22 21 25 25 C 1.41454 * 120.24354 * 359.74915 * 18 17 16 26 26 C 1.36361 * 118.24787 * 0.51786 * 25 18 17 27 27 C 1.34611 * 119.11409 * 104.99731 * 16 15 14 28 28 O 1.22046 * 120.24319 * 0.02857 * 27 16 15 29 29 C 1.46846 * 111.20078 * 61.73798 * 14 13 12 30 30 H 0.97000 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52081 * 62.49959 * 11 9 7 32 32 H 1.08994 * 109.57678 * 302.33719 * 11 9 7 33 33 H 1.09005 * 109.50075 * 297.71797 * 12 11 9 34 34 H 1.08999 * 109.50656 * 177.60036 * 12 11 9 35 35 H 1.08995 * 109.46409 * 180.80809 * 13 12 11 36 36 H 1.09002 * 109.46377 * 60.83533 * 13 12 11 37 37 H 1.09000 * 109.47409 * 321.04218 * 15 14 13 38 38 H 1.09005 * 109.47436 * 201.04835 * 15 14 13 39 39 H 1.07996 * 120.06562 * 359.97283 * 20 19 18 40 40 H 1.07994 * 119.93744 * 180.31486 * 21 20 19 41 41 H 1.08001 * 119.87386 * 179.70247 * 22 21 20 42 42 H 1.08000 * 119.94171 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.06568 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.87449 * 180.26432 * 25 18 17 45 45 H 1.08002 * 121.04869 * 179.77661 * 26 25 18 46 46 H 1.09000 * 109.45993 * 58.27299 * 29 14 13 47 47 H 1.09003 * 109.46873 * 178.24435 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3458 -3.9341 1.2731 13 6 0.6942 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0275 15 6 2.4284 -6.0742 -0.1061 16 7 1.7086 -7.2169 -0.6737 17 7 0.8954 -7.8750 0.0706 18 6 0.2183 -8.9078 -0.3728 19 6 -0.7069 -9.6297 0.5347 20 6 -1.4328 -10.7238 0.0675 21 6 -2.2874 -11.3956 0.9180 22 6 -2.4335 -10.9771 2.2283 23 6 -1.7197 -9.8884 2.6958 24 6 -0.8576 -9.2130 1.8559 25 6 0.3636 -9.3324 -1.7143 26 6 1.2276 -8.6486 -2.5176 27 6 1.9179 -7.5488 -1.9614 28 8 2.6981 -6.9041 -2.6434 29 6 2.2447 -3.6630 0.0061 30 1 -0.4849 0.8401 -0.0004 31 1 -0.3680 -1.7788 1.2286 32 1 0.9898 -2.4815 2.1412 33 1 -0.9963 -4.0165 0.4023 34 1 -0.9417 -4.0154 2.1822 35 1 0.1874 -6.0213 1.2435 36 1 1.3357 -4.9816 2.1199 37 1 2.8200 -6.3424 0.8751 38 1 3.2534 -5.8012 -0.7643 39 1 -1.3235 -11.0481 -0.9568 40 1 -2.8466 -12.2466 0.5584 41 1 -3.1070 -11.5028 2.8890 42 1 -1.8372 -9.5662 3.7199 43 1 -0.3004 -8.3633 2.2220 44 1 -0.1918 -10.1785 -2.0910 45 1 1.3762 -8.9360 -3.5480 46 1 2.8789 -3.5947 0.8900 47 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:31 Heat of formation + Delta-G solvation = 63.705869 kcal Electronic energy + Delta-G solvation = -29164.997270 eV Core-core repulsion = 25313.991992 eV Total energy + Delta-G solvation = -3851.005278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.02648 -39.39663 -38.21098 -37.60977 -35.22010 -33.37431 -32.28500 -31.73096 -31.14019 -29.96839 -29.75652 -26.68736 -25.06532 -24.69541 -24.09505 -22.46796 -22.15099 -21.84712 -21.23130 -18.72870 -18.25202 -17.98702 -16.85974 -16.67984 -16.63793 -16.10941 -15.38250 -14.91332 -14.81721 -14.51192 -14.41460 -14.20046 -13.73610 -13.68704 -13.56825 -13.40810 -13.15360 -12.96829 -12.65366 -12.50246 -12.30658 -11.93653 -11.76329 -11.53833 -11.32076 -11.07393 -10.95551 -10.80755 -10.73662 -10.64721 -10.13546 -9.86455 -9.75098 -9.49850 -9.44749 -9.18952 -9.12389 -8.74107 -8.32546 -8.14915 -7.88223 -5.98233 -4.04732 0.38089 0.74832 1.17035 1.91404 2.22065 3.29847 3.31369 3.37930 3.40710 3.73294 3.83287 4.28792 4.33181 4.44950 4.50013 4.62937 4.73751 4.80277 4.90692 5.13006 5.19509 5.30058 5.31998 5.39052 5.45060 5.56144 5.67891 5.69233 5.73393 5.76641 5.86754 5.93722 6.05573 6.19980 6.23956 6.28180 6.29713 6.33572 6.44901 6.67269 6.69344 6.70404 6.87742 7.15868 7.28753 7.48022 7.61805 7.67010 7.75239 8.04875 8.14861 8.17688 8.44587 8.98825 9.59676 11.07794 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.002831 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.145064 B = 9889.118262 C =11192.447822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.057 3.943 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.060 3.940 14 N -0.547 5.547 15 C 0.273 3.727 16 N -0.324 5.324 17 N -0.196 5.196 18 C 0.080 3.920 19 C -0.022 4.022 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.087 4.087 25 C -0.062 4.062 26 C -0.186 4.186 27 C 0.481 3.519 28 O -0.526 6.526 29 C 0.073 3.927 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.027 0.973 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -24.970 3.281 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.068 4.068 14 N -0.273 5.273 15 C 0.063 3.937 16 N -0.145 5.145 17 N -0.021 5.021 18 C -0.088 4.088 19 C -0.024 4.024 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.107 4.107 25 C -0.085 4.085 26 C -0.216 4.216 27 C 0.279 3.721 28 O -0.404 6.404 29 C -0.053 4.053 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.151 0.849 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.045 0.955 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.681 -23.821 3.199 24.315 hybrid contribution 0.784 0.527 -0.141 0.955 sum -2.897 -23.294 3.058 23.672 Atomic orbital electron populations 1.69894 1.05859 1.26368 1.50534 1.24930 0.94839 0.98996 0.95057 0.86603 0.79809 0.83514 0.78108 1.20685 1.21270 1.19988 1.21111 0.92857 0.90503 1.50910 0.92720 1.18661 0.92519 0.90038 0.94995 0.94775 1.21669 1.00097 0.94735 0.98408 1.21671 0.97131 0.96358 1.00234 1.22216 0.95662 0.99693 0.89193 1.61575 1.24188 1.02071 1.39472 1.22409 0.90843 0.81498 0.98983 1.47009 1.32897 1.25165 1.09409 1.70857 1.00127 1.04075 1.27039 1.20071 1.00315 0.95228 0.93164 1.18079 0.96121 0.95404 0.92794 1.21126 0.96468 0.94933 0.99950 1.21032 0.98850 1.00071 0.93864 1.21263 0.99271 0.96936 0.95927 1.21158 0.96651 0.95883 1.00015 1.21317 0.97533 0.99383 0.92453 1.22262 0.95119 0.98632 0.92490 1.22682 0.99696 0.96623 1.02606 1.18040 0.85202 0.86911 0.81967 1.90992 1.37066 1.54180 1.58113 1.22356 0.96628 0.86955 0.99385 0.93031 0.88982 0.94973 0.92349 0.93293 0.91138 0.95380 0.91143 0.86170 0.85574 0.85708 0.85990 0.85651 0.84893 0.83255 0.81984 0.95460 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 11.35 55.43 0.63 -24.82 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.06 1.43 2.27 -91.69 -0.21 1.22 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.29 6.09 -26.65 -0.16 -2.45 16 13 C 0.06 1.06 5.29 -3.84 -0.02 1.04 16 14 N -0.55 -10.37 4.75 -238.58 -1.13 -11.51 16 15 C 0.27 4.41 5.70 -63.32 -0.36 4.05 16 16 N -0.32 -5.03 3.45 -66.34 -0.23 -5.26 16 17 N -0.20 -2.72 8.23 33.47 0.28 -2.44 16 18 C 0.08 0.92 6.82 -82.75 -0.56 0.36 16 19 C -0.02 -0.22 5.88 -104.90 -0.62 -0.84 16 20 C -0.10 -0.81 9.43 -39.24 -0.37 -1.18 16 21 C -0.12 -0.83 10.03 -39.63 -0.40 -1.23 16 22 C -0.12 -0.83 10.04 -39.52 -0.40 -1.23 16 23 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16 24 C -0.09 -0.88 9.58 -39.25 -0.38 -1.25 16 25 C -0.06 -0.59 9.50 -39.03 -0.37 -0.96 16 26 C -0.19 -2.19 10.12 -39.11 -0.40 -2.58 16 27 C 0.48 7.71 7.47 -15.19 -0.11 7.60 16 28 O -0.53 -10.19 16.44 4.88 0.08 -10.11 16 29 C 0.07 1.55 4.62 -3.84 -0.02 1.54 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.15 6.36 -51.93 -0.33 0.82 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 38 H 0.12 2.00 6.53 -51.93 -0.34 1.67 16 39 H 0.13 0.66 6.22 -52.49 -0.33 0.34 16 40 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.40 7.55 -52.49 -0.40 1.01 16 44 H 0.15 0.84 6.29 -52.49 -0.33 0.51 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 LS Contribution 378.88 15.07 5.71 5.71 Total: -1.00 -32.11 378.88 -11.61 -43.72 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.63 Total: 1.18 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -5.29 Total: -12.83 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.46 Total: -44.03 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.11 -11.61 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.427 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds