Wall clock time and date at job start Tue Mar 31 2020 22:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99900 * 2 1 4 4 H 1.48501 * 109.46878 * 269.99614 * 3 2 1 5 5 H 1.48500 * 109.47311 * 29.99825 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99713 * 3 2 1 7 7 C 1.37870 * 119.99544 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00543 * 0.02562 * 7 2 1 10 10 H 1.08991 * 109.50216 * 60.07550 * 9 7 2 11 11 C 1.53122 * 109.50038 * 299.99868 * 9 7 2 12 12 C 1.53119 * 109.16116 * 182.40261 * 11 9 7 13 13 C 1.53034 * 109.27916 * 57.65476 * 12 11 9 14 14 N 1.46846 * 109.52419 * 300.82336 * 13 12 11 15 15 C 1.46895 * 111.00192 * 185.83797 * 14 13 12 16 16 N 1.46499 * 109.47507 * 81.04779 * 15 14 13 17 17 N 1.28389 * 119.10662 * 284.98197 * 16 15 14 18 18 C 1.31216 * 122.30413 * 179.97438 * 17 16 15 19 19 C 1.48347 * 119.87811 * 179.97438 * 18 17 16 20 20 C 1.39363 * 120.12002 * 179.72753 * 19 18 17 21 21 C 1.38018 * 119.87281 * 179.69823 * 20 19 18 22 22 C 1.38328 * 120.12090 * 0.60076 * 21 20 19 23 23 C 1.38326 * 120.24965 * 359.66968 * 22 21 20 24 24 C 1.38011 * 120.12303 * 0.02756 * 23 22 21 25 25 C 1.41454 * 120.24354 * 359.74915 * 18 17 16 26 26 C 1.36361 * 118.24787 * 0.51786 * 25 18 17 27 27 C 1.34611 * 119.11409 * 104.99731 * 16 15 14 28 28 O 1.22046 * 120.24319 * 0.02857 * 27 16 15 29 29 C 1.46846 * 111.20078 * 61.73798 * 14 13 12 30 30 H 0.97000 * 119.99628 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.52081 * 62.49959 * 11 9 7 32 32 H 1.08994 * 109.57678 * 302.33719 * 11 9 7 33 33 H 1.09005 * 109.50075 * 297.71797 * 12 11 9 34 34 H 1.08999 * 109.50656 * 177.60036 * 12 11 9 35 35 H 1.08995 * 109.46409 * 180.80809 * 13 12 11 36 36 H 1.09002 * 109.46377 * 60.83533 * 13 12 11 37 37 H 1.09000 * 109.47409 * 321.04218 * 15 14 13 38 38 H 1.09005 * 109.47436 * 201.04835 * 15 14 13 39 39 H 1.07996 * 120.06562 * 359.97283 * 20 19 18 40 40 H 1.07994 * 119.93744 * 180.31486 * 21 20 19 41 41 H 1.08001 * 119.87386 * 179.70247 * 22 21 20 42 42 H 1.08000 * 119.94171 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.06568 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.87449 * 180.26432 * 25 18 17 45 45 H 1.08002 * 121.04869 * 179.77661 * 26 25 18 46 46 H 1.09000 * 109.45993 * 58.27299 * 29 14 13 47 47 H 1.09003 * 109.46873 * 178.24435 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6255 -2.5582 -0.8901 11 6 0.3699 -2.5807 1.2502 12 6 -0.3458 -3.9341 1.2731 13 6 0.6942 -5.0563 1.2418 14 7 1.5109 -4.9348 0.0275 15 6 2.4284 -6.0742 -0.1061 16 7 1.7086 -7.2169 -0.6737 17 7 0.8954 -7.8750 0.0706 18 6 0.2183 -8.9078 -0.3728 19 6 -0.7069 -9.6297 0.5347 20 6 -1.4328 -10.7238 0.0675 21 6 -2.2874 -11.3956 0.9180 22 6 -2.4335 -10.9771 2.2283 23 6 -1.7197 -9.8884 2.6958 24 6 -0.8576 -9.2130 1.8559 25 6 0.3636 -9.3324 -1.7143 26 6 1.2276 -8.6486 -2.5176 27 6 1.9179 -7.5488 -1.9614 28 8 2.6981 -6.9041 -2.6434 29 6 2.2447 -3.6630 0.0061 30 1 -0.4849 0.8401 -0.0004 31 1 -0.3680 -1.7788 1.2286 32 1 0.9898 -2.4815 2.1412 33 1 -0.9963 -4.0165 0.4023 34 1 -0.9417 -4.0154 2.1822 35 1 0.1874 -6.0213 1.2435 36 1 1.3357 -4.9816 2.1199 37 1 2.8200 -6.3424 0.8751 38 1 3.2534 -5.8012 -0.7643 39 1 -1.3235 -11.0481 -0.9568 40 1 -2.8466 -12.2466 0.5584 41 1 -3.1070 -11.5028 2.8890 42 1 -1.8372 -9.5662 3.7199 43 1 -0.3004 -8.3633 2.2220 44 1 -0.1918 -10.1785 -2.0910 45 1 1.3762 -8.9360 -3.5480 46 1 2.8789 -3.5947 0.8900 47 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853526564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:30 Heat of formation + Delta-G solvation = 44.972717 kcal Electronic energy + Delta-G solvation = -29165.809601 eV Core-core repulsion = 25313.991992 eV Total energy + Delta-G solvation = -3851.817608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.07791 -40.13704 -39.76408 -38.71243 -36.45811 -35.08476 -33.36361 -33.11946 -31.79411 -31.75428 -30.78076 -27.86121 -27.00524 -25.76913 -25.15219 -23.72602 -23.31270 -22.89175 -22.49573 -20.50108 -19.22344 -18.97966 -18.49021 -17.74298 -17.66672 -17.49735 -16.65081 -16.13913 -16.09466 -15.79409 -15.49540 -15.20593 -15.09169 -14.78815 -14.62967 -14.49529 -14.39850 -14.28518 -14.10962 -13.85063 -13.60136 -13.35194 -13.02114 -12.88802 -12.64542 -12.62236 -12.45300 -12.08318 -11.87535 -11.85271 -11.78652 -11.71350 -11.49059 -11.05168 -10.74928 -10.71112 -10.41674 -10.23431 -9.77052 -9.45826 -9.04194 -8.11036 -6.25753 -0.51028 -0.04222 0.58881 1.03512 1.13339 1.39810 1.40545 1.50745 2.32356 2.41435 2.88587 2.95148 3.08987 3.16086 3.45316 3.70644 3.80653 3.90639 4.01713 4.15678 4.18527 4.21015 4.23587 4.34716 4.37351 4.52630 4.54082 4.62531 4.65220 4.66558 4.72005 4.81095 4.88011 4.95325 4.97850 5.04800 5.07595 5.18494 5.25311 5.29707 5.43500 5.60018 5.62630 5.66659 5.70416 5.83089 6.01616 6.04086 6.13022 6.13393 6.36822 6.52589 6.85726 7.15923 7.42270 8.93858 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015533 B = 0.002831 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.145064 B = 9889.118262 C =11192.447822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.054 0.946 9 C 0.056 3.944 10 H -0.012 1.012 11 C -0.102 4.102 12 C -0.108 4.108 13 C 0.069 3.931 14 N -0.563 5.563 15 C 0.279 3.721 16 N -0.333 5.333 17 N -0.229 5.229 18 C 0.095 3.905 19 C -0.049 4.049 20 C -0.098 4.098 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.040 4.040 26 C -0.195 4.195 27 C 0.463 3.537 28 O -0.580 6.580 29 C 0.088 3.912 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.118 0.882 44 H 0.201 0.799 45 H 0.186 0.814 46 H 0.036 0.964 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 -28.261 3.971 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.006 0.994 11 C -0.140 4.140 12 C -0.145 4.145 13 C -0.058 4.058 14 N -0.289 5.289 15 C 0.069 3.931 16 N -0.152 5.152 17 N -0.053 5.053 18 C -0.073 4.073 19 C -0.051 4.051 20 C -0.118 4.118 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.062 4.062 26 C -0.224 4.224 27 C 0.263 3.737 28 O -0.462 6.462 29 C -0.039 4.039 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.174 0.826 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.154 0.846 43 H 0.136 0.864 44 H 0.218 0.782 45 H 0.204 0.796 46 H 0.054 0.946 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.920 -27.145 3.917 27.863 hybrid contribution 0.982 1.344 -0.286 1.689 sum -3.938 -25.801 3.631 26.351 Atomic orbital electron populations 1.70044 1.07231 1.27142 1.51064 1.25738 0.95687 1.02427 0.94659 0.85576 0.78792 0.79264 0.78135 1.20432 1.20669 1.19077 1.21481 0.93081 0.91902 1.51041 0.92770 1.18558 0.92840 0.91169 0.93741 0.99367 1.21454 0.99158 0.96001 0.97397 1.21566 0.97389 0.94952 1.00640 1.22148 0.95106 0.99411 0.89123 1.61433 1.25016 1.01972 1.40511 1.22257 0.90165 0.80975 0.99741 1.46782 1.33762 1.25231 1.09472 1.70872 1.01522 1.05754 1.27110 1.20704 0.98513 0.93742 0.94374 1.18194 0.97314 0.96875 0.92674 1.21482 0.95286 0.93533 1.01497 1.21446 0.98402 1.00556 0.93513 1.21648 0.98613 0.96112 0.96689 1.21361 0.96639 0.96389 1.00499 1.21359 0.98307 0.99595 0.93185 1.22723 0.93696 0.98863 0.90956 1.22855 0.99911 0.95596 1.04008 1.18781 0.85176 0.87809 0.81927 1.90952 1.39677 1.56309 1.59249 1.21975 0.95517 0.87153 0.99234 0.93015 0.92225 0.94971 0.94249 0.90673 0.89402 0.94140 0.89030 0.87446 0.82620 0.82723 0.83653 0.84590 0.86394 0.78225 0.79639 0.94589 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 11.35 21.45 0.24 -54.14 16 2 C 0.01 0.78 5.30 84.65 0.45 1.23 16 3 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.06 2.96 2.27 -11.49 -0.03 2.93 16 10 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 11 C -0.10 -4.98 5.02 30.67 0.15 -4.83 16 12 C -0.11 -4.31 6.09 30.65 0.19 -4.13 16 13 C 0.07 2.44 5.29 86.32 0.46 2.90 16 14 N -0.56 -22.00 4.75 -908.74 -4.32 -26.32 16 15 C 0.28 9.30 5.70 170.81 0.97 10.27 16 16 N -0.33 -10.50 3.45 -481.98 -1.66 -12.17 16 17 N -0.23 -6.22 8.23 -48.02 -0.40 -6.62 16 18 C 0.09 2.00 6.82 42.72 0.29 2.29 16 19 C -0.05 -0.85 5.88 -20.04 -0.12 -0.96 16 20 C -0.10 -1.08 9.43 22.49 0.21 -0.87 16 21 C -0.12 -1.11 10.03 22.24 0.22 -0.89 16 22 C -0.11 -1.20 10.04 22.31 0.22 -0.97 16 23 C -0.13 -1.88 10.03 22.24 0.22 -1.66 16 24 C -0.10 -1.95 9.58 22.49 0.22 -1.74 16 25 C -0.04 -0.63 9.50 22.62 0.21 -0.42 16 26 C -0.19 -4.27 10.12 22.57 0.23 -4.04 16 27 C 0.46 15.14 7.47 85.01 0.64 15.78 16 28 O -0.58 -23.68 16.44 -5.46 -0.09 -23.77 16 29 C 0.09 3.92 4.62 86.33 0.40 4.32 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.06 3.30 6.15 -2.39 -0.01 3.28 16 32 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.09 2.83 6.36 -2.39 -0.02 2.81 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 2.60 7.92 -2.39 -0.02 2.59 16 38 H 0.11 3.82 6.53 -2.38 -0.02 3.81 16 39 H 0.16 0.68 6.22 -2.91 -0.02 0.66 16 40 H 0.16 0.51 8.06 -2.91 -0.02 0.49 16 41 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.12 2.47 7.55 -2.91 -0.02 2.45 16 44 H 0.20 1.06 6.29 -2.91 -0.02 1.04 16 45 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 47 H 0.05 2.49 7.91 -2.39 -0.02 2.47 16 Total: -1.00 -75.09 378.88 1.94 -73.15 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.98 Total: 14.24 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.16 Total: -11.10 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -6.13 Total: -99.24 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.09 Total: -23.77 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -75.09 1.94 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.128 kcal (2) G-P(sol) polarization free energy of solvation -75.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds