Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48508 * 109.46787 * 240.00145 * 3 2 1 5 5 H 1.48499 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47295 * 120.00153 * 3 2 1 7 7 C 1.37877 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47552 * 175.07114 * 9 7 2 11 11 C 1.46900 * 111.00088 * 75.19965 * 10 9 7 12 12 C 1.52993 * 109.46961 * 199.71074 * 11 10 9 13 13 C 1.50705 * 109.47184 * 174.87092 * 12 11 10 14 14 C 1.38368 * 119.84991 * 269.72479 * 13 12 11 15 15 C 1.37958 * 120.14093 * 179.72485 * 14 13 12 16 16 C 1.39570 * 119.85199 * 0.54157 * 15 14 13 17 17 C 1.47853 * 120.14126 * 179.70898 * 16 15 14 18 18 N 1.34768 * 119.99980 * 0.02562 * 17 16 15 19 19 O 1.21550 * 119.99643 * 180.02562 * 17 16 15 20 20 C 1.39579 * 119.71598 * 359.73250 * 16 15 14 21 21 C 1.37960 * 119.85026 * 359.97438 * 20 16 15 22 22 C 1.46900 * 111.00347 * 199.15595 * 10 9 7 23 23 C 1.50700 * 109.46892 * 66.03867 * 22 10 9 24 24 C 1.38232 * 119.61451 * 95.00674 * 23 22 10 25 25 C 1.38627 * 119.16232 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.41853 * 359.97438 * 25 24 23 27 27 C 1.38177 * 119.16569 * 359.97438 * 26 25 24 28 28 N 1.31852 * 119.62202 * 274.72382 * 23 22 10 29 29 H 0.96996 * 120.00473 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47262 * 55.06833 * 9 7 2 31 31 H 1.09008 * 109.47423 * 295.06893 * 9 7 2 32 32 H 1.08994 * 109.47353 * 79.70763 * 11 10 9 33 33 H 1.09004 * 109.47107 * 319.70686 * 11 10 9 34 34 H 1.09004 * 109.47617 * 54.86577 * 12 11 10 35 35 H 1.09007 * 109.47302 * 294.86569 * 12 11 10 36 36 H 1.07996 * 119.92276 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.06662 * 180.25220 * 15 14 13 38 38 H 0.97003 * 120.00443 * 0.02562 * 18 17 16 39 39 H 0.97005 * 120.00013 * 180.02562 * 18 17 16 40 40 H 1.07993 * 120.07609 * 179.97438 * 20 16 15 41 41 H 1.07992 * 119.92586 * 179.97438 * 21 20 16 42 42 H 1.08991 * 109.47095 * 186.04336 * 22 10 9 43 43 H 1.09000 * 109.46767 * 306.04853 * 22 10 9 44 44 H 1.08000 * 120.42062 * 359.94734 * 24 23 22 45 45 H 1.07998 * 120.79334 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.41556 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.61721 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2013 -3.6131 -0.1201 11 6 2.9069 -3.8417 1.1479 12 6 4.1899 -4.6316 0.8823 13 6 4.9763 -4.7575 2.1617 14 6 5.9162 -3.7965 2.4898 15 6 6.6354 -3.9028 3.6623 16 6 6.4213 -4.9886 4.5127 17 6 7.1931 -5.1123 5.7677 18 7 8.1053 -4.1751 6.0929 19 8 7.0048 -6.0593 6.5061 20 6 5.4758 -5.9576 4.1729 21 6 4.7590 -5.8362 3.0004 22 6 1.5250 -4.8356 -0.5740 23 6 1.0236 -4.6391 -1.9815 24 6 1.7955 -5.0630 -3.0471 25 6 1.3249 -4.8781 -4.3378 26 6 0.0897 -4.2715 -4.5095 27 6 -0.6262 -3.8749 -3.3962 28 7 -0.1488 -4.0700 -2.1823 29 1 -0.4850 0.8400 0.0004 30 1 0.5596 -2.5194 -0.8428 31 1 0.6928 -2.5963 0.9306 32 1 2.2655 -4.4070 1.8238 33 1 3.1579 -2.8831 1.6020 34 1 4.7901 -4.1100 0.1367 35 1 3.9352 -5.6252 0.5132 36 1 6.0841 -2.9593 1.8286 37 1 7.3658 -3.1498 3.9192 38 1 8.2553 -3.4191 5.5038 39 1 8.6119 -4.2564 6.9161 40 1 5.3057 -6.8004 4.8264 41 1 4.0274 -6.5853 2.7362 42 1 2.2270 -5.6690 -0.5514 43 1 0.6836 -5.0511 0.0845 44 1 2.7532 -5.5319 -2.8761 45 1 1.9060 -5.1995 -5.1895 46 1 -0.3080 -4.1119 -5.5008 47 1 -1.5888 -3.4014 -3.5214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878168684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = 25.084003 kcal Electronic energy + Delta-G solvation = -28011.673201 eV Core-core repulsion = 24158.993153 eV Total energy + Delta-G solvation = -3852.680047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22357 -39.81494 -38.55576 -36.76384 -34.14397 -33.11829 -32.57461 -31.99639 -31.12384 -30.95748 -28.61903 -27.32254 -25.27956 -23.72711 -23.07950 -22.71179 -21.97780 -21.70706 -20.36126 -19.85759 -18.34616 -17.03154 -16.49869 -16.45374 -15.75950 -15.64135 -15.24774 -15.17927 -14.94427 -14.89620 -14.71462 -14.50116 -13.88560 -13.65772 -13.51344 -13.14202 -13.12610 -12.94486 -12.57749 -12.36004 -12.17981 -11.88466 -11.58167 -11.41159 -11.25004 -11.08680 -10.95621 -10.72211 -10.50453 -10.27256 -10.22538 -9.95906 -9.82190 -9.46418 -9.25698 -9.04355 -8.84631 -8.72794 -8.60219 -8.33099 -7.30956 -5.95102 -3.96188 0.76740 1.33265 1.50607 1.68062 2.74682 3.30450 3.33539 3.38320 3.40073 3.79198 4.13076 4.46454 4.60436 4.67978 4.73053 4.85394 4.91252 5.05537 5.17263 5.26465 5.27809 5.34837 5.39725 5.42023 5.49831 5.56272 5.70811 5.77700 5.81121 5.91557 5.99037 6.03352 6.07978 6.17998 6.19491 6.26148 6.34396 6.48757 6.52611 6.53873 6.63023 6.67942 6.85948 7.07914 7.09325 7.32261 7.46893 7.83820 8.03407 8.21012 8.22056 8.51217 8.57277 9.10486 9.65948 11.14947 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.002912 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.900985 B = 9613.595748 C =11839.259838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.070 3.930 12 C -0.084 4.084 13 C -0.037 4.037 14 C -0.121 4.121 15 C -0.083 4.083 16 C -0.156 4.156 17 C 0.567 3.433 18 N -0.853 5.853 19 O -0.546 6.546 20 C -0.057 4.057 21 C -0.128 4.128 22 C 0.099 3.901 23 C 0.153 3.847 24 C -0.159 4.159 25 C -0.082 4.082 26 C -0.186 4.186 27 C 0.103 3.897 28 N -0.462 5.462 29 H 0.260 0.740 30 H 0.062 0.938 31 H -0.014 1.014 32 H 0.024 0.976 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.401 0.599 39 H 0.403 0.597 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.075 0.925 43 H 0.042 0.958 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.917 -10.698 -0.072 15.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.058 3.942 10 N -0.254 5.254 11 C -0.058 4.058 12 C -0.122 4.122 13 C -0.038 4.038 14 C -0.139 4.139 15 C -0.102 4.102 16 C -0.159 4.159 17 C 0.354 3.646 18 N -0.417 5.417 19 O -0.424 6.424 20 C -0.076 4.076 21 C -0.146 4.146 22 C -0.030 4.030 23 C 0.015 3.985 24 C -0.180 4.180 25 C -0.108 4.108 26 C -0.206 4.206 27 C -0.054 4.054 28 N -0.172 5.172 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.004 0.996 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.231 0.769 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.350 -10.838 0.660 15.001 hybrid contribution 0.629 1.095 -0.172 1.275 sum 10.979 -9.743 0.488 14.687 Atomic orbital electron populations 1.69966 1.05904 1.26557 1.50900 1.24950 0.94793 0.98969 0.95753 0.86664 0.79528 0.83309 0.78474 1.20351 1.21420 1.20378 1.21104 0.93231 0.90092 1.49944 0.92293 1.19989 0.90445 0.86469 0.97260 1.62187 1.30729 1.04147 1.28337 1.21939 0.92709 1.00095 0.91058 1.20800 0.96778 1.01232 0.93378 1.20302 0.94169 0.93139 0.96166 1.21113 0.96378 0.99363 0.97090 1.21231 0.98703 0.96204 0.94029 1.19775 1.01532 0.98560 0.96075 1.18363 0.79033 0.81698 0.85551 1.43768 1.42647 1.27666 1.27624 1.90796 1.67039 1.32197 1.52417 1.21215 0.92990 0.97483 0.95884 1.21088 1.00314 0.98739 0.94434 1.20975 0.96936 0.94495 0.90590 1.21133 0.89617 0.91798 0.95907 1.21845 1.00674 1.02483 0.92988 1.21458 0.95483 0.96758 0.97136 1.22029 0.96534 1.01836 1.00182 1.22718 0.99414 0.95650 0.87621 1.67587 1.13773 1.10849 1.24955 0.93043 0.92001 0.99584 0.95729 0.89548 0.89701 0.91352 0.84898 0.85887 0.76882 0.76636 0.84945 0.85340 0.90641 0.93969 0.85261 0.85510 0.85499 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.50 -14.04 8.51 -34.44 -0.29 -14.33 16 8 H 0.06 1.60 7.73 -52.49 -0.41 1.20 16 9 C 0.18 4.73 4.59 -4.98 -0.02 4.71 16 10 N -0.53 -10.78 4.35 -237.53 -1.03 -11.81 16 11 C 0.07 1.23 4.79 -3.83 -0.02 1.22 16 12 C -0.08 -1.13 5.37 -27.88 -0.15 -1.28 16 13 C -0.04 -0.46 5.14 -104.53 -0.54 -1.00 16 14 C -0.12 -1.42 9.68 -39.64 -0.38 -1.81 16 15 C -0.08 -0.86 9.54 -39.19 -0.37 -1.23 16 16 C -0.16 -1.84 5.87 -104.97 -0.62 -2.46 16 17 C 0.57 6.74 8.05 -12.33 -0.10 6.65 16 18 N -0.85 -6.42 8.82 30.53 0.27 -6.15 16 19 O -0.55 -8.50 17.18 5.32 0.09 -8.41 16 20 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 21 C -0.13 -1.51 9.68 -39.64 -0.38 -1.89 16 22 C 0.10 1.73 5.10 -4.98 -0.03 1.70 16 23 C 0.15 2.77 5.76 -82.59 -0.48 2.30 16 24 C -0.16 -2.39 9.72 -39.44 -0.38 -2.77 16 25 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 26 C -0.19 -2.55 10.11 -39.44 -0.40 -2.95 16 27 C 0.10 1.71 11.18 -17.55 -0.20 1.52 16 28 N -0.46 -9.14 8.46 -9.47 -0.08 -9.22 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 1.73 5.52 -51.93 -0.29 1.44 16 31 H -0.01 -0.39 8.01 -51.92 -0.42 -0.80 16 32 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 33 H 0.09 1.72 7.22 -51.93 -0.37 1.34 16 34 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.07 0.81 6.90 -51.93 -0.36 0.46 16 36 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 37 H 0.12 0.87 6.41 -52.49 -0.34 0.53 16 38 H 0.40 2.00 6.86 -40.82 -0.28 1.72 16 39 H 0.40 2.43 8.93 -40.82 -0.36 2.07 16 40 H 0.13 1.56 7.65 -52.49 -0.40 1.16 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.08 1.06 6.62 -51.93 -0.34 0.72 16 43 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 47 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -35.28 393.99 -10.83 -46.10 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.50 Total: 5.68 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -5.23 Total: -12.69 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.11 Total: -53.19 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.28 -10.83 -46.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878168684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.188 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds