Wall clock time and date at job start Tue Mar 31 2020 22:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99661 * 2 1 4 4 H 1.48508 * 109.46787 * 240.00145 * 3 2 1 5 5 H 1.48499 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47295 * 120.00153 * 3 2 1 7 7 C 1.37877 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99955 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00195 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47552 * 175.07114 * 9 7 2 11 11 C 1.46900 * 111.00088 * 75.19965 * 10 9 7 12 12 C 1.52993 * 109.46961 * 199.71074 * 11 10 9 13 13 C 1.50705 * 109.47184 * 174.87092 * 12 11 10 14 14 C 1.38368 * 119.84991 * 269.72479 * 13 12 11 15 15 C 1.37958 * 120.14093 * 179.72485 * 14 13 12 16 16 C 1.39570 * 119.85199 * 0.54157 * 15 14 13 17 17 C 1.47853 * 120.14126 * 179.70898 * 16 15 14 18 18 N 1.34768 * 119.99980 * 0.02562 * 17 16 15 19 19 O 1.21550 * 119.99643 * 180.02562 * 17 16 15 20 20 C 1.39579 * 119.71598 * 359.73250 * 16 15 14 21 21 C 1.37960 * 119.85026 * 359.97438 * 20 16 15 22 22 C 1.46900 * 111.00347 * 199.15595 * 10 9 7 23 23 C 1.50700 * 109.46892 * 66.03867 * 22 10 9 24 24 C 1.38232 * 119.61451 * 95.00674 * 23 22 10 25 25 C 1.38627 * 119.16232 * 179.97438 * 24 23 22 26 26 C 1.38674 * 118.41853 * 359.97438 * 25 24 23 27 27 C 1.38177 * 119.16569 * 359.97438 * 26 25 24 28 28 N 1.31852 * 119.62202 * 274.72382 * 23 22 10 29 29 H 0.96996 * 120.00473 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47262 * 55.06833 * 9 7 2 31 31 H 1.09008 * 109.47423 * 295.06893 * 9 7 2 32 32 H 1.08994 * 109.47353 * 79.70763 * 11 10 9 33 33 H 1.09004 * 109.47107 * 319.70686 * 11 10 9 34 34 H 1.09004 * 109.47617 * 54.86577 * 12 11 10 35 35 H 1.09007 * 109.47302 * 294.86569 * 12 11 10 36 36 H 1.07996 * 119.92276 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.06662 * 180.25220 * 15 14 13 38 38 H 0.97003 * 120.00443 * 0.02562 * 18 17 16 39 39 H 0.97005 * 120.00013 * 180.02562 * 18 17 16 40 40 H 1.07993 * 120.07609 * 179.97438 * 20 16 15 41 41 H 1.07992 * 119.92586 * 179.97438 * 21 20 16 42 42 H 1.08991 * 109.47095 * 186.04336 * 22 10 9 43 43 H 1.09000 * 109.46767 * 306.04853 * 22 10 9 44 44 H 1.08000 * 120.42062 * 359.94734 * 24 23 22 45 45 H 1.07998 * 120.79334 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.41556 * 180.02562 * 26 25 24 47 47 H 1.08001 * 119.61721 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2013 -3.6131 -0.1201 11 6 2.9069 -3.8417 1.1479 12 6 4.1899 -4.6316 0.8823 13 6 4.9763 -4.7575 2.1617 14 6 5.9162 -3.7965 2.4898 15 6 6.6354 -3.9028 3.6623 16 6 6.4213 -4.9886 4.5127 17 6 7.1931 -5.1123 5.7677 18 7 8.1053 -4.1751 6.0929 19 8 7.0048 -6.0593 6.5061 20 6 5.4758 -5.9576 4.1729 21 6 4.7590 -5.8362 3.0004 22 6 1.5250 -4.8356 -0.5740 23 6 1.0236 -4.6391 -1.9815 24 6 1.7955 -5.0630 -3.0471 25 6 1.3249 -4.8781 -4.3378 26 6 0.0897 -4.2715 -4.5095 27 6 -0.6262 -3.8749 -3.3962 28 7 -0.1488 -4.0700 -2.1823 29 1 -0.4850 0.8400 0.0004 30 1 0.5596 -2.5194 -0.8428 31 1 0.6928 -2.5963 0.9306 32 1 2.2655 -4.4070 1.8238 33 1 3.1579 -2.8831 1.6020 34 1 4.7901 -4.1100 0.1367 35 1 3.9352 -5.6252 0.5132 36 1 6.0841 -2.9593 1.8286 37 1 7.3658 -3.1498 3.9192 38 1 8.2553 -3.4191 5.5038 39 1 8.6119 -4.2564 6.9161 40 1 5.3057 -6.8004 4.8264 41 1 4.0274 -6.5853 2.7362 42 1 2.2270 -5.6690 -0.5514 43 1 0.6836 -5.0511 0.0845 44 1 2.7532 -5.5319 -2.8761 45 1 1.9060 -5.1995 -5.1895 46 1 -0.3080 -4.1119 -5.5008 47 1 -1.5888 -3.4014 -3.5214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878168684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:15 Heat of formation + Delta-G solvation = 0.592922 kcal Electronic energy + Delta-G solvation = -28012.735214 eV Core-core repulsion = 24158.993153 eV Total energy + Delta-G solvation = -3853.742060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16512 -41.01582 -39.54783 -38.23509 -35.09348 -34.74628 -34.01690 -33.17610 -32.43217 -31.83950 -29.99956 -28.93928 -26.71293 -25.17435 -24.25054 -23.60326 -23.47622 -22.85842 -21.53141 -21.14117 -19.15677 -18.50963 -17.87352 -17.66756 -17.09709 -16.87039 -16.44550 -16.34761 -16.22071 -16.03372 -15.84741 -15.79347 -15.22226 -14.97387 -14.51009 -14.39899 -14.24315 -14.06148 -13.96031 -13.69169 -13.59783 -13.38391 -13.14759 -12.73344 -12.60333 -12.48028 -12.39949 -12.27585 -12.08570 -11.78076 -11.49730 -11.25805 -11.19474 -10.75463 -10.67616 -10.51843 -10.12138 -9.92647 -9.81910 -9.69441 -9.00907 -8.12254 -6.22020 -0.15889 0.31682 0.44560 0.54713 1.39983 1.43547 1.50941 1.82154 2.42371 2.54122 2.83386 2.92044 3.19550 3.45953 3.59907 3.82654 3.87190 3.91874 4.03091 4.10274 4.12014 4.23319 4.33499 4.38596 4.45087 4.45860 4.53481 4.59714 4.68149 4.75373 4.85519 4.90697 4.97520 5.02123 5.14535 5.19555 5.30430 5.34037 5.36832 5.39566 5.40895 5.51376 5.68210 5.72777 5.84384 5.94324 5.95856 6.16380 6.38820 6.42691 6.64622 6.94216 7.26053 7.29083 7.45703 8.97843 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009610 B = 0.002912 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.900985 B = 9613.595748 C =11839.259838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.199 3.801 10 N -0.528 5.528 11 C 0.074 3.926 12 C -0.066 4.066 13 C -0.050 4.050 14 C -0.130 4.130 15 C -0.074 4.074 16 C -0.165 4.165 17 C 0.563 3.437 18 N -0.830 5.830 19 O -0.591 6.591 20 C -0.071 4.071 21 C -0.129 4.129 22 C 0.101 3.899 23 C 0.118 3.882 24 C -0.158 4.158 25 C -0.078 4.078 26 C -0.175 4.175 27 C 0.073 3.927 28 N -0.514 5.514 29 H 0.260 0.740 30 H 0.040 0.960 31 H -0.057 1.057 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.416 0.584 39 H 0.413 0.587 40 H 0.129 0.871 41 H 0.142 0.858 42 H 0.116 0.884 43 H 0.020 0.980 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -10.650 -1.668 17.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.252 5.252 11 C -0.055 4.055 12 C -0.104 4.104 13 C -0.051 4.051 14 C -0.148 4.148 15 C -0.093 4.093 16 C -0.168 4.168 17 C 0.350 3.650 18 N -0.394 5.394 19 O -0.473 6.473 20 C -0.090 4.090 21 C -0.146 4.146 22 C -0.027 4.027 23 C -0.019 4.019 24 C -0.178 4.178 25 C -0.104 4.104 26 C -0.194 4.194 27 C -0.084 4.084 28 N -0.225 5.225 29 H 0.069 0.931 30 H 0.058 0.942 31 H -0.040 1.040 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.249 0.751 39 H 0.245 0.755 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.134 0.866 43 H 0.038 0.962 44 H 0.176 0.824 45 H 0.188 0.812 46 H 0.181 0.819 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.386 -10.773 -0.940 17.208 hybrid contribution -0.312 1.045 0.308 1.134 sum 13.073 -9.728 -0.632 16.308 Atomic orbital electron populations 1.70130 1.07762 1.27455 1.52113 1.25885 0.95621 1.02981 0.95258 0.85538 0.78229 0.78311 0.79150 1.19323 1.21290 1.18976 1.21454 0.93486 0.91166 1.49375 0.91934 1.19584 0.90673 0.88412 0.94034 1.62115 1.29328 1.04239 1.29543 1.21919 0.94433 0.99320 0.89784 1.20589 0.94366 1.01358 0.94090 1.20272 0.94855 0.93960 0.96004 1.21320 0.96418 0.99336 0.97766 1.21524 0.98656 0.96194 0.92889 1.19938 1.01497 0.98959 0.96372 1.18452 0.79494 0.81782 0.85242 1.43582 1.40961 1.26855 1.28003 1.90777 1.68639 1.34173 1.53689 1.21325 0.93599 0.97898 0.96146 1.21213 1.00388 0.98918 0.94123 1.21084 0.96960 0.94134 0.90523 1.21290 0.90187 0.93705 0.96760 1.22166 1.01191 1.01548 0.92862 1.21990 0.95320 0.95319 0.97788 1.22412 0.96346 0.99951 1.00716 1.23028 1.00485 0.96914 0.87975 1.67448 1.15432 1.12518 1.27075 0.93107 0.94230 1.03968 0.96079 0.92446 0.89696 0.89294 0.84213 0.82377 0.75101 0.75484 0.85258 0.84038 0.86640 0.96157 0.82438 0.81222 0.81909 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.52 -29.53 8.51 25.60 0.22 -29.31 16 8 H 0.06 3.44 7.73 -2.91 -0.02 3.42 16 9 C 0.20 10.87 4.59 85.55 0.39 11.26 16 10 N -0.53 -22.06 4.35 -905.40 -3.94 -26.00 16 11 C 0.07 2.63 4.79 86.30 0.41 3.04 16 12 C -0.07 -1.70 5.37 29.85 0.16 -1.54 16 13 C -0.05 -1.19 5.14 -19.80 -0.10 -1.29 16 14 C -0.13 -2.83 9.68 22.23 0.22 -2.62 16 15 C -0.07 -1.36 9.54 22.52 0.21 -1.15 16 16 C -0.16 -3.66 5.87 -20.09 -0.12 -3.78 16 17 C 0.56 12.73 8.05 86.79 0.70 13.43 16 18 N -0.83 -10.56 8.82 -175.61 -1.55 -12.11 16 19 O -0.59 -18.32 17.18 -3.87 -0.07 -18.38 16 20 C -0.07 -1.69 9.60 22.53 0.22 -1.47 16 21 C -0.13 -2.91 9.68 22.23 0.22 -2.70 16 22 C 0.10 3.61 5.10 85.56 0.44 4.05 16 23 C 0.12 4.30 5.76 42.55 0.25 4.55 16 24 C -0.16 -4.38 9.72 22.36 0.22 -4.16 16 25 C -0.08 -1.83 10.18 22.47 0.23 -1.60 16 26 C -0.17 -4.44 10.11 22.36 0.23 -4.21 16 27 C 0.07 2.46 11.18 84.67 0.95 3.41 16 28 N -0.51 -21.26 8.46 -183.88 -1.56 -22.82 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.04 2.35 5.52 -2.39 -0.01 2.34 16 31 H -0.06 -3.52 8.01 -2.38 -0.02 -3.54 16 32 H 0.02 0.75 8.00 -2.39 -0.02 0.74 16 33 H 0.06 2.36 7.22 -2.38 -0.02 2.35 16 34 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 35 H 0.09 1.90 6.90 -2.38 -0.02 1.88 16 36 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.16 1.65 6.41 -2.91 -0.02 1.63 16 38 H 0.42 2.80 6.86 -92.71 -0.64 2.16 16 39 H 0.41 4.08 8.93 -92.70 -0.83 3.25 16 40 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 41 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.12 3.08 6.62 -2.39 -0.02 3.06 16 43 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 44 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 45 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 46 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 47 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -81.99 393.99 0.03 -81.96 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.46 Total: 22.05 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.29 Total: -13.61 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.76 Total: -118.61 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.07 Total: -18.38 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -81.99 0.03 -81.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878168684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.550 kcal (2) G-P(sol) polarization free energy of solvation -81.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds