Wall clock time and date at job start Tue Mar 31 2020 22:22:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86801 * 119.99795 * 2 1
4 4 H 1.48501 * 109.46610 * 269.99144 * 3 2 1
5 5 H 1.48494 * 109.47314 * 29.99606 * 3 2 1
6 6 H 1.48502 * 109.47078 * 149.99822 * 3 2 1
7 7 C 1.37876 * 119.99815 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00386 * 0.02562 * 7 2 1
10 10 N 1.46498 * 109.47068 * 180.02562 * 9 7 2
11 11 C 1.35040 * 125.92895 * 125.00460 * 10 9 7
12 12 C 1.35088 * 107.97430 * 179.74022 * 11 10 9
13 13 C 1.50701 * 126.07407 * 180.21956 * 12 11 10
14 14 N 1.46906 * 109.47244 * 105.64782 * 13 12 11
15 15 C 1.48564 * 111.00041 * 288.59037 * 14 13 12
16 16 C 1.54370 * 104.59337 * 200.95461 * 15 14 13
17 17 H 1.09005 * 118.16213 * 244.14795 * 16 15 14
18 18 C 1.57014 * 118.21074 * 86.26372 * 16 15 14
19 19 C 1.52999 * 59.66813 * 268.82230 * 18 16 15
20 20 O 1.42898 * 119.52860 * 247.59815 * 19 18 16
21 21 C 1.48553 * 111.00371 * 173.16905 * 14 13 12
22 22 C 1.40844 * 107.84966 * 0.36920 * 12 11 10
23 23 C 1.48428 * 126.03563 * 179.89090 * 22 12 11
24 24 C 1.39325 * 120.11570 * 136.73759 * 23 22 12
25 25 C 1.38027 * 119.87721 * 180.02562 * 24 23 22
26 26 C 1.38320 * 120.11921 * 0.02562 * 25 24 23
27 27 C 1.38328 * 120.24160 * 0.25531 * 26 25 24
28 28 C 1.38029 * 120.11768 * 359.48818 * 27 26 25
29 29 N 1.31625 * 107.92600 * 359.62472 * 22 12 11
30 30 H 0.97003 * 120.00501 * 0.02562 * 1 2 3
31 31 H 1.09000 * 109.46958 * 59.99693 * 9 7 2
32 32 H 1.09004 * 109.46870 * 299.99725 * 9 7 2
33 33 H 1.07993 * 126.01351 * 0.02562 * 11 10 9
34 34 H 1.08993 * 109.47329 * 225.64780 * 13 12 11
35 35 H 1.09003 * 109.47354 * 345.65445 * 13 12 11
36 36 H 1.08995 * 110.41260 * 319.74145 * 15 14 13
37 37 H 1.09004 * 110.41122 * 82.18081 * 15 14 13
38 38 H 1.09007 * 116.97247 * 161.28457 * 18 16 15
39 39 H 1.09001 * 118.40656 * 15.71973 * 18 16 15
40 40 H 0.96699 * 113.99873 * 250.12377 * 20 19 18
41 41 H 1.09000 * 110.41442 * 277.82543 * 21 14 13
42 42 H 1.09000 * 110.41112 * 40.26199 * 21 14 13
43 43 H 1.08000 * 120.06444 * 359.97438 * 24 23 22
44 44 H 1.07993 * 119.94300 * 179.97438 * 25 24 23
45 45 H 1.07995 * 119.88352 * 179.97438 * 26 25 24
46 46 H 1.07991 * 119.94234 * 179.74634 * 27 26 25
47 47 H 1.07995 * 120.06072 * 180.23351 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2030 -3.6127 0.0018
11 6 2.2405 -4.6222 0.8979
12 6 3.2538 -5.4469 0.5546
13 6 3.6557 -6.7072 1.2767
14 7 3.2271 -7.8761 0.4970
15 6 1.7506 -8.0344 0.5428
16 6 1.5067 -9.5149 0.1800
17 1 0.9635 -9.7367 -0.7387
18 6 1.5562 -10.5796 1.3330
19 6 2.8205 -10.2381 0.5418
20 8 3.4002 -11.2211 -0.3182
21 6 3.7476 -9.1335 1.0928
22 6 3.8702 -4.9178 -0.5960
23 6 5.0305 -5.5036 -1.3126
24 6 5.0382 -5.5563 -2.7049
25 6 6.1195 -6.1026 -3.3663
26 6 7.1938 -6.5977 -2.6494
27 6 7.1888 -6.5532 -1.2669
28 6 6.1150 -6.0043 -0.5955
29 7 3.2319 -3.8152 -0.9268
30 1 -0.4851 0.8400 -0.0004
31 1 0.6246 -2.5571 -0.8897
32 1 0.6240 -2.5568 0.8904
33 1 1.5744 -4.7503 1.7382
34 1 4.7388 -6.7276 1.3965
35 1 3.1811 -6.7310 2.2577
36 1 1.3764 -7.8217 1.5442
37 1 1.2753 -7.3806 -0.1884
38 1 1.0858 -11.5431 1.1368
39 1 1.4991 -10.2304 2.3640
40 1 4.2438 -11.5721 -0.0018
41 1 4.7759 -9.3072 0.7758
42 1 3.6859 -9.0929 2.1803
43 1 4.1993 -5.1711 -3.2655
44 1 6.1264 -6.1444 -4.4454
45 1 8.0377 -7.0247 -3.1708
46 1 8.0283 -6.9449 -0.7119
47 1 6.1137 -5.9666 0.4838
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000895651289.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:50
Heat of formation + Delta-G solvation = 102.710299 kcal
Electronic energy + Delta-G solvation = -29018.746623 eV
Core-core repulsion = 25169.432705 eV
Total energy + Delta-G solvation = -3849.313919 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.72135 -39.88905 -38.54012 -36.15781 -34.17533 -33.48162 -32.25020 -30.79495
-30.36691 -29.77712 -28.19851 -27.45527 -25.73289 -23.67196 -22.89921 -22.23546
-21.59095 -21.14204 -20.32196 -19.88676 -19.08532 -17.31501 -16.70009 -16.52204
-15.92994 -15.72802 -15.39385 -14.89893 -14.65126 -14.33930 -14.29908 -13.98905
-13.80436 -13.68649 -13.34288 -13.13447 -13.11202 -12.76578 -12.54482 -12.35921
-12.20344 -12.09228 -11.79011 -11.58403 -11.36642 -11.20265 -10.97513 -10.93674
-10.87152 -10.66780 -10.29789 -10.27738 -9.90156 -9.74704 -9.58332 -8.97896
-8.67629 -8.65511 -8.40307 -8.15407 -7.57202 -6.28151 -4.33338 1.46876
1.67350 2.68519 3.20502 3.22426 3.28287 3.28617 3.32627 3.49429
3.68321 4.01486 4.18602 4.28576 4.30562 4.55998 4.76427 4.96678
5.03987 5.08046 5.12651 5.15751 5.22065 5.28398 5.33297 5.36435
5.43801 5.47491 5.55192 5.61748 5.63994 5.75231 5.79459 5.87493
5.90984 6.06918 6.14696 6.21109 6.33342 6.45335 6.61064 6.72408
6.77476 6.82437 6.95316 7.02966 7.04126 7.21032 7.33464 7.40267
7.66086 7.82591 7.94635 8.53619 8.75717 9.32799 10.80739
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.010857 B = 0.003350 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2578.390571 B = 8355.861439 C =10283.942348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.063 3.937
3 Si 0.908 3.092
4 H -0.277 1.277
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.529 4.529
8 H 0.069 0.931
9 C 0.257 3.743
10 N -0.320 5.320
11 C 0.054 3.946
12 C -0.243 4.243
13 C 0.130 3.870
14 N -0.492 5.492
15 C 0.066 3.934
16 C -0.146 4.146
17 H 0.121 0.879
18 C -0.166 4.166
19 C 0.045 3.955
20 O -0.521 6.521
21 C 0.046 3.954
22 C 0.093 3.907
23 C 0.025 3.975
24 C -0.095 4.095
25 C -0.121 4.121
26 C -0.127 4.127
27 C -0.123 4.123
28 C -0.099 4.099
29 N -0.265 5.265
30 H 0.268 0.732
31 H 0.046 0.954
32 H 0.055 0.945
33 H 0.162 0.838
34 H 0.079 0.921
35 H 0.038 0.962
36 H 0.048 0.952
37 H 0.090 0.910
38 H 0.104 0.896
39 H 0.096 0.904
40 H 0.380 0.620
41 H 0.088 0.912
42 H 0.051 0.949
43 H 0.122 0.878
44 H 0.118 0.882
45 H 0.115 0.885
46 H 0.117 0.883
47 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.441 -20.397 3.142 22.298
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.533 5.533
2 C -0.140 4.140
3 Si 0.735 3.265
4 H -0.202 1.202
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.568 4.568
8 H 0.087 0.913
9 C 0.139 3.861
10 N -0.100 5.100
11 C -0.096 4.096
12 C -0.255 4.255
13 C 0.002 3.998
14 N -0.216 5.216
15 C -0.061 4.061
16 C -0.165 4.165
17 H 0.139 0.861
18 C -0.204 4.204
19 C 0.003 3.997
20 O -0.326 6.326
21 C -0.082 4.082
22 C -0.070 4.070
23 C 0.023 3.977
24 C -0.114 4.114
25 C -0.139 4.139
26 C -0.146 4.146
27 C -0.141 4.141
28 C -0.118 4.118
29 N -0.089 5.089
30 H 0.077 0.923
31 H 0.064 0.936
32 H 0.072 0.928
33 H 0.179 0.821
34 H 0.097 0.903
35 H 0.056 0.944
36 H 0.066 0.934
37 H 0.108 0.892
38 H 0.123 0.877
39 H 0.115 0.885
40 H 0.228 0.772
41 H 0.106 0.894
42 H 0.069 0.931
43 H 0.140 0.860
44 H 0.136 0.864
45 H 0.134 0.866
46 H 0.135 0.865
47 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 7.726 -18.887 1.428 20.456
hybrid contribution 0.404 0.095 1.687 1.737
sum 8.129 -18.792 3.115 20.711
Atomic orbital electron populations
1.69913 1.06056 1.27691 1.49654 1.24936 0.94978 0.99572 0.94496
0.86325 0.79661 0.82057 0.78479 1.20248 1.20972 1.19669 1.21239
0.94004 0.89296 1.52235 0.91260 1.19756 0.85699 0.81372 0.99248
1.49370 1.23357 1.19276 1.17973 1.22186 0.99885 0.90644 0.96921
1.19431 1.03155 1.00819 1.02120 1.20419 1.00086 0.86727 0.92607
1.65618 1.06360 1.00654 1.48989 1.22615 0.89405 0.93350 1.00770
1.24472 1.00055 0.91825 1.00127 0.86113 1.24310 1.00086 0.99711
0.96247 1.22566 0.88675 0.91499 0.97007 1.86455 1.40925 1.57007
1.48182 1.23027 0.98816 0.89332 0.97032 1.20397 0.96791 0.94205
0.95654 1.17744 0.91198 0.96579 0.92161 1.21220 0.98418 0.98260
0.93543 1.21011 0.93990 0.99317 0.99610 1.21066 0.98403 1.00833
0.94262 1.20937 0.98186 1.00596 0.94422 1.21047 0.92928 0.98286
0.99551 1.77683 1.00776 1.16459 1.13944 0.92289 0.93607 0.92765
0.82072 0.90267 0.94382 0.93379 0.89153 0.87743 0.88526 0.77185
0.89363 0.93085 0.85985 0.86358 0.86650 0.86451 0.86243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16
2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
3 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16
4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16
6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
7 C -0.53 -14.60 9.23 -34.44 -0.32 -14.92 16
8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16
9 C 0.26 6.40 6.26 -5.19 -0.03 6.36 16
10 N -0.32 -7.16 3.67 -62.58 -0.23 -7.39 16
11 C 0.05 0.98 11.32 -17.26 -0.20 0.79 16
12 C -0.24 -4.10 5.15 -104.76 -0.54 -4.64 16
13 C 0.13 1.69 4.80 -4.97 -0.02 1.67 16
14 N -0.49 -6.25 5.35 -231.42 -1.24 -7.49 16
15 C 0.07 0.81 5.85 -2.18 -0.01 0.80 16
16 C -0.15 -1.66 7.29 -87.06 -0.63 -2.29 16
17 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16
18 C -0.17 -1.51 10.28 -24.56 -0.25 -1.76 16
19 C 0.04 0.47 3.79 -89.24 -0.34 0.13 16
20 O -0.52 -5.60 13.97 -35.23 -0.49 -6.09 16
21 C 0.05 0.46 6.22 -2.19 -0.01 0.45 16
22 C 0.09 1.79 6.66 -82.77 -0.55 1.24 16
23 C 0.03 0.42 5.74 -104.89 -0.60 -0.18 16
24 C -0.10 -1.53 9.78 -39.25 -0.38 -1.92 16
25 C -0.12 -1.62 10.03 -39.63 -0.40 -2.02 16
26 C -0.13 -1.53 10.04 -39.52 -0.40 -1.92 16
27 C -0.12 -1.49 10.04 -39.62 -0.40 -1.89 16
28 C -0.10 -1.40 8.89 -39.25 -0.35 -1.75 16
29 N -0.26 -6.04 12.44 33.43 0.42 -5.63 16
30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16
31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16
32 H 0.05 1.32 8.07 -51.93 -0.42 0.91 16
33 H 0.16 2.43 8.06 -52.49 -0.42 2.00 16
34 H 0.08 0.96 5.75 -51.93 -0.30 0.67 16
35 H 0.04 0.45 7.83 -51.93 -0.41 0.04 16
36 H 0.05 0.54 7.80 -51.93 -0.40 0.14 16
37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16
40 H 0.38 2.32 9.11 45.56 0.42 2.73 16
41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
42 H 0.05 0.45 7.99 -51.93 -0.41 0.03 16
43 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16
44 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16
45 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16
46 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16
47 H 0.12 1.55 6.25 -52.49 -0.33 1.22 16
LS Contribution 394.45 15.07 5.94 5.94
Total: -1.00 -31.89 394.45 -11.47 -43.36
By element:
Atomic # 1 Polarization: 11.64 SS G_CDS: -6.05 Total: 5.59 kcal
Atomic # 6 Polarization: -14.68 SS G_CDS: -5.54 Total: -20.22 kcal
Atomic # 7 Polarization: -44.60 SS G_CDS: -0.32 Total: -44.91 kcal
Atomic # 8 Polarization: -5.60 SS G_CDS: -0.49 Total: -6.09 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -31.89 -11.47 -43.36 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895651289.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.069 kcal
(2) G-P(sol) polarization free energy of solvation -31.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.710 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds