Wall clock time and date at job start Tue Mar 31 2020 22:22:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86801 * 119.99795 * 2 1
4 4 H 1.48501 * 109.46610 * 269.99144 * 3 2 1
5 5 H 1.48494 * 109.47314 * 29.99606 * 3 2 1
6 6 H 1.48502 * 109.47078 * 149.99822 * 3 2 1
7 7 C 1.37876 * 119.99815 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99404 * 180.02562 * 7 2 1
9 9 C 1.50702 * 120.00386 * 0.02562 * 7 2 1
10 10 N 1.46498 * 109.47068 * 180.02562 * 9 7 2
11 11 C 1.35040 * 125.92895 * 125.00460 * 10 9 7
12 12 C 1.35088 * 107.97430 * 179.74022 * 11 10 9
13 13 C 1.50701 * 126.07407 * 180.21956 * 12 11 10
14 14 N 1.46906 * 109.47244 * 105.64782 * 13 12 11
15 15 C 1.48564 * 111.00041 * 288.59037 * 14 13 12
16 16 C 1.54370 * 104.59337 * 200.95461 * 15 14 13
17 17 H 1.09005 * 118.16213 * 244.14795 * 16 15 14
18 18 C 1.57014 * 118.21074 * 86.26372 * 16 15 14
19 19 C 1.52999 * 59.66813 * 268.82230 * 18 16 15
20 20 O 1.42898 * 119.52860 * 247.59815 * 19 18 16
21 21 C 1.48553 * 111.00371 * 173.16905 * 14 13 12
22 22 C 1.40844 * 107.84966 * 0.36920 * 12 11 10
23 23 C 1.48428 * 126.03563 * 179.89090 * 22 12 11
24 24 C 1.39325 * 120.11570 * 136.73759 * 23 22 12
25 25 C 1.38027 * 119.87721 * 180.02562 * 24 23 22
26 26 C 1.38320 * 120.11921 * 0.02562 * 25 24 23
27 27 C 1.38328 * 120.24160 * 0.25531 * 26 25 24
28 28 C 1.38029 * 120.11768 * 359.48818 * 27 26 25
29 29 N 1.31625 * 107.92600 * 359.62472 * 22 12 11
30 30 H 0.97003 * 120.00501 * 0.02562 * 1 2 3
31 31 H 1.09000 * 109.46958 * 59.99693 * 9 7 2
32 32 H 1.09004 * 109.46870 * 299.99725 * 9 7 2
33 33 H 1.07993 * 126.01351 * 0.02562 * 11 10 9
34 34 H 1.08993 * 109.47329 * 225.64780 * 13 12 11
35 35 H 1.09003 * 109.47354 * 345.65445 * 13 12 11
36 36 H 1.08995 * 110.41260 * 319.74145 * 15 14 13
37 37 H 1.09004 * 110.41122 * 82.18081 * 15 14 13
38 38 H 1.09007 * 116.97247 * 161.28457 * 18 16 15
39 39 H 1.09001 * 118.40656 * 15.71973 * 18 16 15
40 40 H 0.96699 * 113.99873 * 250.12377 * 20 19 18
41 41 H 1.09000 * 110.41442 * 277.82543 * 21 14 13
42 42 H 1.09000 * 110.41112 * 40.26199 * 21 14 13
43 43 H 1.08000 * 120.06444 * 359.97438 * 24 23 22
44 44 H 1.07993 * 119.94300 * 179.97438 * 25 24 23
45 45 H 1.07995 * 119.88352 * 179.97438 * 26 25 24
46 46 H 1.07991 * 119.94234 * 179.74634 * 27 26 25
47 47 H 1.07995 * 120.06072 * 180.23351 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4465 2.6527 0.6999
6 1 3.5466 1.4403 0.7001
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1940 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2030 -3.6127 0.0018
11 6 2.2405 -4.6222 0.8979
12 6 3.2538 -5.4469 0.5546
13 6 3.6557 -6.7072 1.2767
14 7 3.2271 -7.8761 0.4970
15 6 1.7506 -8.0344 0.5428
16 6 1.5067 -9.5149 0.1800
17 1 0.9635 -9.7367 -0.7387
18 6 1.5562 -10.5796 1.3330
19 6 2.8205 -10.2381 0.5418
20 8 3.4002 -11.2211 -0.3182
21 6 3.7476 -9.1335 1.0928
22 6 3.8702 -4.9178 -0.5960
23 6 5.0305 -5.5036 -1.3126
24 6 5.0382 -5.5563 -2.7049
25 6 6.1195 -6.1026 -3.3663
26 6 7.1938 -6.5977 -2.6494
27 6 7.1888 -6.5532 -1.2669
28 6 6.1150 -6.0043 -0.5955
29 7 3.2319 -3.8152 -0.9268
30 1 -0.4851 0.8400 -0.0004
31 1 0.6246 -2.5571 -0.8897
32 1 0.6240 -2.5568 0.8904
33 1 1.5744 -4.7503 1.7382
34 1 4.7388 -6.7276 1.3965
35 1 3.1811 -6.7310 2.2577
36 1 1.3764 -7.8217 1.5442
37 1 1.2753 -7.3806 -0.1884
38 1 1.0858 -11.5431 1.1368
39 1 1.4991 -10.2304 2.3640
40 1 4.2438 -11.5721 -0.0018
41 1 4.7759 -9.3072 0.7758
42 1 3.6859 -9.0929 2.1803
43 1 4.1993 -5.1711 -3.2655
44 1 6.1264 -6.1444 -4.4454
45 1 8.0377 -7.0247 -3.1708
46 1 8.0283 -6.9449 -0.7119
47 1 6.1137 -5.9666 0.4838
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000895651289.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:22:50
Heat of formation + Delta-G solvation = 81.255576 kcal
Electronic energy + Delta-G solvation = -29019.676970 eV
Core-core repulsion = 25169.432705 eV
Total energy + Delta-G solvation = -3850.244265 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.13013 -40.79951 -39.65058 -37.05344 -35.79624 -34.73431 -33.80137 -31.92353
-31.69963 -31.12087 -29.10132 -29.01069 -27.05972 -25.33705 -23.94093 -23.41198
-22.83418 -21.98855 -21.32123 -21.20044 -20.42454 -18.68088 -18.17490 -17.81038
-17.29745 -16.70792 -16.46880 -16.39827 -15.81226 -15.72070 -15.54421 -15.16570
-14.91686 -14.64563 -14.54143 -14.19958 -14.13177 -14.02358 -14.00216 -13.70770
-13.54521 -13.33687 -12.98101 -12.94118 -12.77394 -12.56820 -12.31678 -12.25343
-12.05864 -11.99695 -11.79920 -11.68820 -11.34839 -11.04588 -10.77818 -10.44825
-10.36156 -9.74221 -9.53532 -9.30995 -9.00613 -8.37319 -6.51806 0.32487
0.60422 1.20078 1.33985 1.36010 1.46760 1.83963 1.94682 2.31599
2.50816 2.91398 2.94058 3.05194 3.17779 3.45101 3.66743 3.72982
3.89738 4.04681 4.10044 4.16926 4.20646 4.27983 4.34596 4.38457
4.50812 4.51717 4.64767 4.67001 4.74775 4.75248 4.78977 4.82036
4.88764 4.97667 5.00388 5.08299 5.13298 5.17462 5.20846 5.26379
5.52596 5.53240 5.68212 5.73665 5.81465 5.86171 5.93778 6.09541
6.18933 6.28434 6.60643 6.85265 7.02044 7.18494 8.70310
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.010857 B = 0.003350 C = 0.002722
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2578.390571 B = 8355.861439 C =10283.942348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C 0.019 3.981
3 Si 0.971 3.029
4 H -0.275 1.275
5 H -0.269 1.269
6 H -0.272 1.272
7 C -0.548 4.548
8 H 0.050 0.950
9 C 0.273 3.727
10 N -0.349 5.349
11 C 0.047 3.953
12 C -0.231 4.231
13 C 0.136 3.864
14 N -0.512 5.512
15 C 0.071 3.929
16 C -0.175 4.175
17 H 0.105 0.895
18 C -0.140 4.140
19 C 0.046 3.954
20 O -0.541 6.541
21 C 0.051 3.949
22 C 0.096 3.904
23 C -0.007 4.007
24 C -0.122 4.122
25 C -0.125 4.125
26 C -0.118 4.118
27 C -0.115 4.115
28 C -0.100 4.100
29 N -0.325 5.325
30 H 0.273 0.727
31 H 0.015 0.985
32 H 0.056 0.944
33 H 0.191 0.809
34 H 0.094 0.906
35 H 0.059 0.941
36 H 0.061 0.939
37 H 0.056 0.944
38 H 0.111 0.889
39 H 0.116 0.884
40 H 0.400 0.600
41 H 0.099 0.901
42 H 0.074 0.926
43 H 0.096 0.904
44 H 0.138 0.862
45 H 0.152 0.848
46 H 0.156 0.844
47 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.287 -22.573 4.829 25.696
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.181 4.181
3 Si 0.795 3.205
4 H -0.200 1.200
5 H -0.193 1.193
6 H -0.196 1.196
7 C -0.586 4.586
8 H 0.068 0.932
9 C 0.154 3.846
10 N -0.129 5.129
11 C -0.101 4.101
12 C -0.243 4.243
13 C 0.008 3.992
14 N -0.236 5.236
15 C -0.057 4.057
16 C -0.194 4.194
17 H 0.123 0.877
18 C -0.178 4.178
19 C 0.003 3.997
20 O -0.349 6.349
21 C -0.076 4.076
22 C -0.068 4.068
23 C -0.009 4.009
24 C -0.141 4.141
25 C -0.142 4.142
26 C -0.136 4.136
27 C -0.132 4.132
28 C -0.120 4.120
29 N -0.149 5.149
30 H 0.082 0.918
31 H 0.033 0.967
32 H 0.074 0.926
33 H 0.208 0.792
34 H 0.112 0.888
35 H 0.077 0.923
36 H 0.079 0.921
37 H 0.075 0.925
38 H 0.130 0.870
39 H 0.134 0.866
40 H 0.251 0.749
41 H 0.117 0.883
42 H 0.092 0.908
43 H 0.114 0.886
44 H 0.156 0.844
45 H 0.170 0.830
46 H 0.174 0.826
47 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 10.584 -21.098 3.127 23.810
hybrid contribution -0.382 0.598 1.073 1.286
sum 10.201 -20.501 4.200 23.280
Atomic orbital electron populations
1.69990 1.07199 1.28813 1.49868 1.25736 0.95853 1.02723 0.93802
0.85363 0.78465 0.78165 0.78540 1.20018 1.19337 1.19622 1.21373
0.93244 0.91031 1.52920 0.93203 1.19249 0.85817 0.81832 0.97664
1.49051 1.24025 1.20106 1.19737 1.22795 1.00661 0.89658 0.96970
1.19888 1.01601 1.01726 1.01077 1.20436 1.01051 0.84967 0.92752
1.65508 1.06517 1.01688 1.49931 1.22467 0.89344 0.93485 1.00379
1.24404 1.01898 0.91861 1.01227 0.87729 1.24362 0.98333 0.98832
0.96237 1.22653 0.88585 0.91554 0.96864 1.86407 1.42409 1.57092
1.48984 1.23063 0.98959 0.87466 0.98159 1.21026 0.96748 0.93003
0.96025 1.17901 0.91778 0.98648 0.92548 1.21203 0.99151 1.00109
0.93662 1.21275 0.93486 0.98662 1.00817 1.21526 0.98478 0.99101
0.94533 1.21380 0.98193 0.98923 0.94744 1.21226 0.92589 0.97951
1.00191 1.77592 1.02401 1.19127 1.15756 0.91779 0.96693 0.92649
0.79244 0.88823 0.92327 0.92102 0.92526 0.87022 0.86620 0.74905
0.88321 0.90829 0.88595 0.84422 0.82989 0.82622 0.85055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.02 13.29 21.45 0.28 -52.74 16
2 C 0.02 1.09 5.46 84.66 0.46 1.55 16
3 Si 0.97 44.56 29.54 68.60 2.03 46.59 16
4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16
5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16
6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16
7 C -0.55 -31.72 9.23 25.60 0.24 -31.49 16
8 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16
9 C 0.27 14.56 6.26 85.63 0.54 15.10 16
10 N -0.35 -16.63 3.67 -351.91 -1.29 -17.92 16
11 C 0.05 1.79 11.32 83.47 0.95 2.73 16
12 C -0.23 -7.88 5.15 -19.95 -0.10 -7.99 16
13 C 0.14 3.28 4.80 85.56 0.41 3.69 16
14 N -0.51 -12.25 5.35 -886.07 -4.74 -16.99 16
15 C 0.07 1.73 5.85 86.45 0.51 2.23 16
16 C -0.17 -3.87 7.29 -8.49 -0.06 -3.94 16
17 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16
18 C -0.14 -2.18 10.28 32.00 0.33 -1.85 16
19 C 0.05 0.85 3.79 -9.90 -0.04 0.81 16
20 O -0.54 -10.45 13.97 -148.98 -2.08 -12.53 16
21 C 0.05 0.86 6.22 86.45 0.54 1.40 16
22 C 0.10 3.86 6.66 42.53 0.28 4.14 16
23 C -0.01 -0.23 5.74 -20.04 -0.11 -0.35 16
24 C -0.12 -4.09 9.78 22.48 0.22 -3.87 16
25 C -0.12 -3.18 10.03 22.24 0.22 -2.96 16
26 C -0.12 -2.41 10.04 22.31 0.22 -2.19 16
27 C -0.11 -2.33 10.04 22.24 0.22 -2.11 16
28 C -0.10 -2.64 8.89 22.48 0.20 -2.44 16
29 N -0.33 -15.93 12.44 -48.15 -0.60 -16.53 16
30 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16
31 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.06 2.87 8.07 -2.39 -0.02 2.85 16
33 H 0.19 5.71 8.06 -2.91 -0.02 5.69 16
34 H 0.09 2.00 5.75 -2.39 -0.01 1.99 16
35 H 0.06 1.19 7.83 -2.39 -0.02 1.17 16
36 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16
37 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
38 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16
39 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16
40 H 0.40 3.75 9.11 -74.06 -0.67 3.08 16
41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16
42 H 0.07 0.95 7.99 -2.39 -0.02 0.93 16
43 H 0.10 3.58 8.06 -2.91 -0.02 3.55 16
44 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16
45 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16
46 H 0.16 2.01 8.06 -2.92 -0.02 1.98 16
47 H 0.13 3.05 6.25 -2.91 -0.02 3.03 16
Total: -1.00 -74.02 394.45 -1.07 -75.09
By element:
Atomic # 1 Polarization: 22.23 SS G_CDS: 0.31 Total: 22.54 kcal
Atomic # 6 Polarization: -32.52 SS G_CDS: 5.02 Total: -27.50 kcal
Atomic # 7 Polarization: -97.84 SS G_CDS: -6.34 Total: -104.19 kcal
Atomic # 8 Polarization: -10.45 SS G_CDS: -2.08 Total: -12.53 kcal
Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -74.02 -1.07 -75.09 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000895651289.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.344 kcal
(2) G-P(sol) polarization free energy of solvation -74.020 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.324 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds