Wall clock time and date at job start Tue Mar 31 2020 22:32:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86800 * 119.99897 * 2 1
4 4 H 1.48493 * 109.47164 * 269.99984 * 3 2 1
5 5 H 1.48491 * 109.47349 * 30.00455 * 3 2 1
6 6 H 1.48509 * 109.46743 * 150.00271 * 3 2 1
7 7 C 1.37872 * 119.99848 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00079 * 179.97438 * 7 2 1
9 9 C 1.50706 * 120.00143 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47036 * 180.02562 * 9 7 2
11 11 C 1.34783 * 119.99740 * 180.02562 * 10 9 7
12 12 O 1.21278 * 119.99745 * 0.02562 * 11 10 9
13 13 C 1.50701 * 119.99707 * 179.97438 * 11 10 9
14 14 N 1.46903 * 109.46803 * 187.61206 * 13 11 10
15 15 C 1.47037 * 110.98830 * 54.19796 * 14 13 11
16 16 C 1.53366 * 109.73683 * 52.80395 * 15 14 13
17 17 N 1.46803 * 108.25393 * 50.15823 * 16 15 14
18 18 C 1.35723 * 128.03733 * 163.39984 * 17 16 15
19 19 C 1.35064 * 108.16863 * 180.22082 * 18 17 16
20 20 C 1.41100 * 107.48325 * 359.93379 * 19 18 17
21 21 C 1.34121 * 107.32910 * 359.95418 * 20 19 18
22 22 C 1.47354 * 111.00001 * 178.37775 * 14 13 11
23 23 H 1.08997 * 109.75619 * 166.45848 * 22 14 13
24 24 C 1.50695 * 109.79537 * 45.73435 * 22 14 13
25 25 C 1.38239 * 120.00568 * 267.07219 * 24 22 14
26 26 C 1.38236 * 120.00146 * 179.76741 * 25 24 22
27 27 C 1.38234 * 119.99942 * 0.50550 * 26 25 24
28 28 C 1.38236 * 119.99858 * 359.74725 * 27 26 25
29 29 C 1.38229 * 120.00273 * 0.02562 * 28 27 26
30 30 H 0.96998 * 119.99576 * 359.97438 * 1 2 3
31 31 H 1.09008 * 109.46835 * 60.00112 * 9 7 2
32 32 H 1.08997 * 109.46950 * 300.00427 * 9 7 2
33 33 H 0.96996 * 120.00113 * 359.97438 * 10 9 7
34 34 H 1.08998 * 109.47229 * 67.61660 * 13 11 10
35 35 H 1.09000 * 109.47399 * 307.60857 * 13 11 10
36 36 H 1.08995 * 109.47772 * 292.70287 * 15 14 13
37 37 H 1.08993 * 109.40889 * 172.86180 * 15 14 13
38 38 H 1.09001 * 109.71064 * 290.45567 * 16 15 14
39 39 H 1.08994 * 109.71474 * 169.86566 * 16 15 14
40 40 H 1.08002 * 125.91528 * 0.24820 * 18 17 16
41 41 H 1.07992 * 126.26038 * 179.90877 * 19 18 17
42 42 H 1.08010 * 126.33867 * 179.97438 * 20 19 18
43 43 H 1.08000 * 119.99645 * 359.97438 * 25 24 22
44 44 H 1.07991 * 119.99675 * 180.22853 * 26 25 24
45 45 H 1.08000 * 120.00076 * 179.72604 * 27 26 25
46 46 H 1.08008 * 119.99884 * 179.97438 * 28 27 26
47 47 H 1.08003 * 120.00272 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5613 -5.1049 -0.0020
13 6 2.7330 -6.0288 -0.0016
14 7 2.0077 -7.2930 -0.1856
15 6 1.1660 -7.2468 -1.3903
16 6 2.0126 -6.8255 -2.5978
17 7 3.2144 -7.6680 -2.6331
18 6 4.0704 -7.8607 -3.6686
19 6 5.0339 -8.7168 -3.2647
20 6 4.7588 -9.0631 -1.9248
21 6 3.6453 -8.4085 -1.5636
22 6 2.9387 -8.4343 -0.2300
23 1 2.3839 -9.3666 -0.1251
24 6 3.9473 -8.3138 0.8831
25 6 5.1602 -7.6920 0.6527
26 6 6.0834 -7.5773 1.6752
27 6 5.7979 -8.0936 2.9253
28 6 4.5871 -8.7200 3.1543
29 6 3.6621 -8.8306 2.1332
30 1 -0.4849 0.8401 0.0004
31 1 0.6240 -2.5567 -0.8904
32 1 0.6247 -2.5571 0.8896
33 1 3.1566 -3.4354 -0.0009
34 1 3.2666 -6.0511 0.9485
35 1 3.4457 -5.8971 -0.8157
36 1 0.3607 -6.5271 -1.2437
37 1 0.7403 -8.2334 -1.5728
38 1 2.3001 -5.7789 -2.4980
39 1 1.4397 -6.9635 -3.5147
40 1 3.9946 -7.4076 -4.6460
41 1 5.8629 -9.0717 -3.8588
42 1 5.3379 -9.7314 -1.3047
43 1 5.3852 -7.2929 -0.3253
44 1 7.0294 -7.0882 1.4961
45 1 6.5210 -8.0079 3.7230
46 1 4.3642 -9.1238 4.1310
47 1 2.7162 -9.3205 2.3120
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000914612452.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:32:44
Heat of formation + Delta-G solvation = 65.773731 kcal
Electronic energy + Delta-G solvation = -29869.616466 eV
Core-core repulsion = 26018.700858 eV
Total energy + Delta-G solvation = -3850.915608 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.05257 -39.49544 -38.98445 -36.88244 -34.25479 -33.79338 -32.40236 -31.22627
-30.95303 -29.50756 -28.67675 -27.82770 -26.47210 -24.66823 -22.94316 -22.59437
-21.90144 -21.27961 -20.50928 -19.79219 -18.54707 -17.50517 -16.99597 -16.94356
-16.13746 -15.95270 -15.57958 -15.05504 -14.94443 -14.68907 -14.47754 -14.36096
-14.04037 -13.65625 -13.54555 -13.48152 -13.22228 -12.85755 -12.64555 -12.60486
-12.28358 -12.16827 -12.05912 -11.98415 -11.94002 -11.49114 -11.21390 -11.07236
-11.02992 -10.96258 -10.83932 -10.34349 -9.44766 -9.12138 -8.95804 -8.87365
-8.78284 -8.61182 -8.39455 -8.05765 -7.92973 -6.21193 -4.28277 1.21961
1.35850 2.17860 2.80022 2.97285 3.20992 3.24751 3.27566 3.29840
3.50849 3.83538 4.18400 4.34130 4.44625 4.53780 4.69555 4.83772
4.91696 4.95860 5.03356 5.08370 5.12703 5.15229 5.27043 5.30588
5.44641 5.46272 5.53729 5.56796 5.56959 5.65100 5.68809 5.87133
5.98477 6.08510 6.21466 6.25691 6.38343 6.45684 6.52745 6.76493
6.81312 6.92821 7.02545 7.17908 7.24425 7.32426 7.36916 7.45222
7.61433 7.91685 8.54670 8.72382 9.01673 9.38551 10.88918
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.011229 B = 0.003330 C = 0.002985
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2493.011413 B = 8405.873778 C = 9379.449097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.885 5.885
2 C 0.065 3.935
3 Si 0.903 3.097
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.544 4.544
8 H 0.062 0.938
9 C 0.251 3.749
10 N -0.711 5.711
11 C 0.498 3.502
12 O -0.541 6.541
13 C 0.031 3.969
14 N -0.501 5.501
15 C 0.028 3.972
16 C 0.064 3.936
17 N -0.442 5.442
18 C -0.005 4.005
19 C -0.209 4.209
20 C -0.177 4.177
21 C -0.019 4.019
22 C 0.194 3.806
23 H 0.107 0.893
24 C -0.077 4.077
25 C -0.100 4.100
26 C -0.124 4.124
27 C -0.117 4.117
28 C -0.124 4.124
29 C -0.095 4.095
30 H 0.266 0.734
31 H 0.026 0.974
32 H 0.028 0.972
33 H 0.390 0.610
34 H 0.105 0.895
35 H 0.058 0.942
36 H 0.138 0.862
37 H 0.080 0.920
38 H 0.084 0.916
39 H 0.092 0.908
40 H 0.159 0.841
41 H 0.133 0.867
42 H 0.133 0.867
43 H 0.125 0.875
44 H 0.121 0.879
45 H 0.119 0.881
46 H 0.121 0.879
47 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.891 -19.479 -1.388 22.360
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.139 4.139
3 Si 0.730 3.270
4 H -0.205 1.205
5 H -0.209 1.209
6 H -0.197 1.197
7 C -0.583 4.583
8 H 0.081 0.919
9 C 0.131 3.869
10 N -0.359 5.359
11 C 0.282 3.718
12 O -0.420 6.420
13 C -0.100 4.100
14 N -0.222 5.222
15 C -0.099 4.099
16 C -0.059 4.059
17 N -0.118 5.118
18 C -0.136 4.136
19 C -0.234 4.234
20 C -0.202 4.202
21 C -0.132 4.132
22 C 0.085 3.915
23 H 0.125 0.875
24 C -0.078 4.078
25 C -0.119 4.119
26 C -0.142 4.142
27 C -0.135 4.135
28 C -0.142 4.142
29 C -0.114 4.114
30 H 0.076 0.924
31 H 0.044 0.956
32 H 0.046 0.954
33 H 0.222 0.778
34 H 0.123 0.877
35 H 0.075 0.925
36 H 0.156 0.844
37 H 0.099 0.901
38 H 0.102 0.898
39 H 0.111 0.889
40 H 0.176 0.824
41 H 0.151 0.849
42 H 0.151 0.849
43 H 0.143 0.857
44 H 0.139 0.861
45 H 0.137 0.863
46 H 0.139 0.861
47 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 9.189 -19.289 -0.998 21.389
hybrid contribution 1.564 1.233 -0.886 2.180
sum 10.753 -18.057 -1.884 21.100
Atomic orbital electron populations
1.69972 1.06098 1.27348 1.48819 1.24939 0.94906 0.99434 0.94626
0.86423 0.79680 0.82647 0.78235 1.20466 1.20940 1.19714 1.21215
0.93254 0.90443 1.53343 0.91946 1.19109 0.88213 0.81858 0.97738
1.46481 1.11199 1.06058 1.72197 1.20266 0.89429 0.84190 0.77871
1.90549 1.16642 1.84339 1.50434 1.22165 0.95603 0.88974 1.03296
1.62272 1.21130 1.01394 1.37401 1.23026 0.97204 1.04790 0.84929
1.22760 0.85507 0.95074 1.02569 1.44266 1.21232 1.35743 1.10541
1.21701 0.93754 1.04616 0.93501 1.20919 1.01718 1.04295 0.96500
1.20418 0.98361 1.05043 0.96407 1.20967 0.99444 1.01399 0.91388
1.19439 0.89959 0.95429 0.86656 0.87541 1.19457 0.94477 0.99596
0.94223 1.21242 0.93214 0.98012 0.99392 1.21135 0.99565 1.00257
0.93213 1.21173 0.97117 0.98208 0.97048 1.21115 0.94104 0.99995
0.98978 1.20989 0.99172 0.99035 0.92159 0.92416 0.95571 0.95423
0.77762 0.87663 0.92450 0.84420 0.90124 0.89818 0.88925 0.82394
0.84907 0.84949 0.85721 0.86143 0.86275 0.86071 0.85741
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16
4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16
7 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16
8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16
9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16
10 N -0.71 -14.59 5.55 -61.47 -0.34 -14.93 16
11 C 0.50 9.55 6.90 -10.98 -0.08 9.48 16
12 O -0.54 -12.05 13.77 5.56 0.08 -11.98 16
13 C 0.03 0.46 3.78 -4.97 -0.02 0.44 16
14 N -0.50 -6.98 4.76 -230.02 -1.10 -8.08 16
15 C 0.03 0.38 5.35 -3.56 -0.02 0.36 16
16 C 0.06 0.79 6.24 -3.69 -0.02 0.76 16
17 N -0.44 -5.45 2.89 -112.14 -0.32 -5.77 16
18 C 0.00 -0.06 11.55 -16.96 -0.20 -0.25 16
19 C -0.21 -2.39 10.87 -39.63 -0.43 -2.82 16
20 C -0.18 -2.09 8.81 -39.95 -0.35 -2.45 16
21 C -0.02 -0.24 4.43 -81.60 -0.36 -0.60 16
22 C 0.19 2.32 2.87 -69.65 -0.20 2.12 16
23 H 0.11 1.20 8.11 -51.93 -0.42 0.77 16
24 C -0.08 -0.88 3.72 -104.62 -0.39 -1.27 16
25 C -0.10 -1.13 7.06 -39.58 -0.28 -1.40 16
26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16
27 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16
28 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16
29 C -0.09 -1.01 9.72 -39.58 -0.38 -1.40 16
30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
31 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16
32 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16
34 H 0.11 1.57 6.38 -51.93 -0.33 1.24 16
35 H 0.06 0.83 6.07 -51.93 -0.32 0.52 16
36 H 0.14 2.22 5.39 -51.93 -0.28 1.94 16
37 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16
38 H 0.08 1.16 6.68 -51.93 -0.35 0.81 16
39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
40 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16
41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16
42 H 0.13 1.45 8.04 -52.48 -0.42 1.03 16
43 H 0.12 1.49 6.31 -52.49 -0.33 1.16 16
44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16
45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16
46 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16
47 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16
LS Contribution 374.77 15.07 5.65 5.65
Total: -1.00 -31.04 374.77 -11.24 -42.27
By element:
Atomic # 1 Polarization: 17.26 SS G_CDS: -6.55 Total: 10.71 kcal
Atomic # 6 Polarization: -4.16 SS G_CDS: -4.37 Total: -8.53 kcal
Atomic # 7 Polarization: -52.72 SS G_CDS: -1.02 Total: -53.74 kcal
Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.98 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -31.04 -11.24 -42.27 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000914612452.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.047 kcal
(2) G-P(sol) polarization free energy of solvation -31.038 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.774 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds