Wall clock time and date at job start Tue Mar 31 2020 22:32:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31520 * 1
3 3 Si 1.86800 * 119.99897 * 2 1
4 4 H 1.48493 * 109.47164 * 269.99984 * 3 2 1
5 5 H 1.48491 * 109.47349 * 30.00455 * 3 2 1
6 6 H 1.48509 * 109.46743 * 150.00271 * 3 2 1
7 7 C 1.37872 * 119.99848 * 180.02562 * 2 1 3
8 8 H 1.08005 * 120.00079 * 179.97438 * 7 2 1
9 9 C 1.50706 * 120.00143 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47036 * 180.02562 * 9 7 2
11 11 C 1.34783 * 119.99740 * 180.02562 * 10 9 7
12 12 O 1.21278 * 119.99745 * 0.02562 * 11 10 9
13 13 C 1.50701 * 119.99707 * 179.97438 * 11 10 9
14 14 N 1.46903 * 109.46803 * 187.61206 * 13 11 10
15 15 C 1.47037 * 110.98830 * 54.19796 * 14 13 11
16 16 C 1.53366 * 109.73683 * 52.80395 * 15 14 13
17 17 N 1.46803 * 108.25393 * 50.15823 * 16 15 14
18 18 C 1.35723 * 128.03733 * 163.39984 * 17 16 15
19 19 C 1.35064 * 108.16863 * 180.22082 * 18 17 16
20 20 C 1.41100 * 107.48325 * 359.93379 * 19 18 17
21 21 C 1.34121 * 107.32910 * 359.95418 * 20 19 18
22 22 C 1.47354 * 111.00001 * 178.37775 * 14 13 11
23 23 H 1.08997 * 109.75619 * 166.45848 * 22 14 13
24 24 C 1.50695 * 109.79537 * 45.73435 * 22 14 13
25 25 C 1.38239 * 120.00568 * 267.07219 * 24 22 14
26 26 C 1.38236 * 120.00146 * 179.76741 * 25 24 22
27 27 C 1.38234 * 119.99942 * 0.50550 * 26 25 24
28 28 C 1.38236 * 119.99858 * 359.74725 * 27 26 25
29 29 C 1.38229 * 120.00273 * 0.02562 * 28 27 26
30 30 H 0.96998 * 119.99576 * 359.97438 * 1 2 3
31 31 H 1.09008 * 109.46835 * 60.00112 * 9 7 2
32 32 H 1.08997 * 109.46950 * 300.00427 * 9 7 2
33 33 H 0.96996 * 120.00113 * 359.97438 * 10 9 7
34 34 H 1.08998 * 109.47229 * 67.61660 * 13 11 10
35 35 H 1.09000 * 109.47399 * 307.60857 * 13 11 10
36 36 H 1.08995 * 109.47772 * 292.70287 * 15 14 13
37 37 H 1.08993 * 109.40889 * 172.86180 * 15 14 13
38 38 H 1.09001 * 109.71064 * 290.45567 * 16 15 14
39 39 H 1.08994 * 109.71474 * 169.86566 * 16 15 14
40 40 H 1.08002 * 125.91528 * 0.24820 * 18 17 16
41 41 H 1.07992 * 126.26038 * 179.90877 * 19 18 17
42 42 H 1.08010 * 126.33867 * 179.97438 * 20 19 18
43 43 H 1.08000 * 119.99645 * 359.97438 * 25 24 22
44 44 H 1.07991 * 119.99675 * 180.22853 * 26 25 24
45 45 H 1.08000 * 120.00076 * 179.72604 * 27 26 25
46 46 H 1.08008 * 119.99884 * 179.97438 * 28 27 26
47 47 H 1.08003 * 120.00272 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7001
6 1 3.5468 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 7 2.2030 -3.6127 -0.0005
11 6 1.7537 -4.8834 -0.0011
12 8 0.5613 -5.1049 -0.0020
13 6 2.7330 -6.0288 -0.0016
14 7 2.0077 -7.2930 -0.1856
15 6 1.1660 -7.2468 -1.3903
16 6 2.0126 -6.8255 -2.5978
17 7 3.2144 -7.6680 -2.6331
18 6 4.0704 -7.8607 -3.6686
19 6 5.0339 -8.7168 -3.2647
20 6 4.7588 -9.0631 -1.9248
21 6 3.6453 -8.4085 -1.5636
22 6 2.9387 -8.4343 -0.2300
23 1 2.3839 -9.3666 -0.1251
24 6 3.9473 -8.3138 0.8831
25 6 5.1602 -7.6920 0.6527
26 6 6.0834 -7.5773 1.6752
27 6 5.7979 -8.0936 2.9253
28 6 4.5871 -8.7200 3.1543
29 6 3.6621 -8.8306 2.1332
30 1 -0.4849 0.8401 0.0004
31 1 0.6240 -2.5567 -0.8904
32 1 0.6247 -2.5571 0.8896
33 1 3.1566 -3.4354 -0.0009
34 1 3.2666 -6.0511 0.9485
35 1 3.4457 -5.8971 -0.8157
36 1 0.3607 -6.5271 -1.2437
37 1 0.7403 -8.2334 -1.5728
38 1 2.3001 -5.7789 -2.4980
39 1 1.4397 -6.9635 -3.5147
40 1 3.9946 -7.4076 -4.6460
41 1 5.8629 -9.0717 -3.8588
42 1 5.3379 -9.7314 -1.3047
43 1 5.3852 -7.2929 -0.3253
44 1 7.0294 -7.0882 1.4961
45 1 6.5210 -8.0079 3.7230
46 1 4.3642 -9.1238 4.1310
47 1 2.7162 -9.3205 2.3120
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000914612452.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:32:43
Heat of formation + Delta-G solvation = 46.680283 kcal
Electronic energy + Delta-G solvation = -29870.444420 eV
Core-core repulsion = 26018.700858 eV
Total energy + Delta-G solvation = -3851.743562 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.01335 -40.76830 -40.03849 -38.06075 -36.12795 -34.73407 -34.37873 -32.21972
-31.74747 -30.68870 -29.73389 -29.20517 -27.94191 -25.65325 -24.72048 -23.39875
-23.09168 -22.23742 -21.42428 -21.36775 -19.61344 -18.94629 -18.20911 -17.87063
-17.61390 -17.27239 -16.96315 -16.41638 -16.02360 -16.00194 -15.75462 -15.55029
-15.27767 -14.92053 -14.51425 -14.37804 -14.25352 -14.07090 -14.05205 -13.86637
-13.70194 -13.49762 -13.09493 -12.99209 -12.92840 -12.89637 -12.80550 -12.68896
-12.31061 -12.22089 -11.85717 -11.80381 -11.50339 -10.81849 -10.67676 -9.88168
-9.77193 -9.74770 -9.51755 -9.43104 -8.95162 -8.30796 -6.47040 0.42001
0.57679 1.27001 1.41986 1.43692 1.54990 1.63762 1.87347 2.09318
2.20322 2.40952 2.80729 3.04356 3.09425 3.47539 3.59866 3.72442
3.78635 3.88503 4.06352 4.11999 4.15696 4.24246 4.28966 4.29729
4.37542 4.50617 4.55598 4.66811 4.69914 4.75148 4.80452 4.92555
5.08071 5.10133 5.22018 5.23142 5.34849 5.36941 5.46210 5.55230
5.64293 5.68722 5.69530 5.77564 5.80415 5.83557 6.11965 6.15842
6.26701 6.42693 6.62773 6.84564 7.21488 7.41632 8.81102
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.011229 B = 0.003330 C = 0.002985
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2493.011413 B = 8405.873778 C = 9379.449097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.008 3.992
3 Si 0.981 3.019
4 H -0.271 1.271
5 H -0.283 1.283
6 H -0.257 1.257
7 C -0.557 4.557
8 H 0.080 0.920
9 C 0.270 3.730
10 N -0.707 5.707
11 C 0.499 3.501
12 O -0.572 6.572
13 C 0.056 3.944
14 N -0.512 5.512
15 C 0.032 3.968
16 C 0.070 3.930
17 N -0.448 5.448
18 C -0.012 4.012
19 C -0.216 4.216
20 C -0.179 4.179
21 C -0.031 4.031
22 C 0.199 3.801
23 H 0.114 0.886
24 C -0.088 4.088
25 C -0.107 4.107
26 C -0.130 4.130
27 C -0.119 4.119
28 C -0.128 4.128
29 C -0.106 4.106
30 H 0.269 0.731
31 H -0.008 1.008
32 H -0.011 1.011
33 H 0.405 0.595
34 H 0.112 0.888
35 H 0.066 0.934
36 H 0.108 0.892
37 H 0.096 0.904
38 H 0.065 0.935
39 H 0.111 0.889
40 H 0.178 0.822
41 H 0.150 0.850
42 H 0.139 0.861
43 H 0.116 0.884
44 H 0.136 0.864
45 H 0.142 0.858
46 H 0.141 0.859
47 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.503 -19.932 -1.278 24.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.192 4.192
3 Si 0.804 3.196
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.181 1.181
7 C -0.595 4.595
8 H 0.098 0.902
9 C 0.148 3.852
10 N -0.357 5.357
11 C 0.285 3.715
12 O -0.453 6.453
13 C -0.075 4.075
14 N -0.234 5.234
15 C -0.096 4.096
16 C -0.053 4.053
17 N -0.125 5.125
18 C -0.142 4.142
19 C -0.240 4.240
20 C -0.204 4.204
21 C -0.143 4.143
22 C 0.092 3.908
23 H 0.131 0.869
24 C -0.089 4.089
25 C -0.126 4.126
26 C -0.148 4.148
27 C -0.137 4.137
28 C -0.146 4.146
29 C -0.124 4.124
30 H 0.078 0.922
31 H 0.010 0.990
32 H 0.007 0.993
33 H 0.239 0.761
34 H 0.130 0.870
35 H 0.084 0.916
36 H 0.126 0.874
37 H 0.114 0.886
38 H 0.084 0.916
39 H 0.129 0.871
40 H 0.195 0.805
41 H 0.168 0.832
42 H 0.157 0.843
43 H 0.134 0.866
44 H 0.153 0.847
45 H 0.159 0.841
46 H 0.159 0.841
47 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 11.843 -19.784 -0.890 23.075
hybrid contribution 0.733 1.263 -0.901 1.716
sum 12.576 -18.521 -1.791 22.459
Atomic orbital electron populations
1.70125 1.08142 1.28550 1.49879 1.25994 0.95735 1.03671 0.93830
0.85214 0.78530 0.77246 0.78604 1.19594 1.20878 1.18121 1.21592
0.94174 0.90697 1.53014 0.90178 1.18536 0.88479 0.83931 0.94290
1.46218 1.11142 1.05565 1.72818 1.20998 0.89728 0.84540 0.76215
1.90553 1.18536 1.84839 1.51378 1.21884 0.94078 0.87696 1.03863
1.62245 1.21797 1.01377 1.37949 1.22855 0.96658 1.04708 0.85396
1.22612 0.85747 0.94061 1.02838 1.44300 1.21316 1.35918 1.10948
1.22125 0.93456 1.04590 0.94077 1.21200 1.02179 1.04141 0.96499
1.20561 0.98115 1.04903 0.96781 1.21040 0.99854 1.01939 0.91421
1.19435 0.89817 0.94499 0.87097 0.86885 1.19460 0.94539 1.00556
0.94360 1.21201 0.93543 0.98481 0.99370 1.21375 0.99971 1.00204
0.93232 1.21488 0.97465 0.97355 0.97406 1.21411 0.93930 0.99617
0.99610 1.21176 0.99840 0.99217 0.92215 0.92224 0.98989 0.99341
0.76058 0.87048 0.91567 0.87387 0.88604 0.91631 0.87090 0.80478
0.83216 0.84349 0.86641 0.84657 0.84066 0.84104 0.85133
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.26 13.29 21.45 0.28 -54.97 16
2 C 0.01 0.42 5.46 84.65 0.46 0.88 16
3 Si 0.98 41.96 29.54 68.60 2.03 43.98 16
4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16
6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16
7 C -0.56 -29.99 9.28 25.60 0.24 -29.76 16
8 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16
9 C 0.27 14.57 5.43 85.64 0.46 15.03 16
10 N -0.71 -29.72 5.55 -466.77 -2.59 -32.31 16
11 C 0.50 19.64 6.90 87.66 0.60 20.25 16
12 O -0.57 -26.72 13.77 -3.02 -0.04 -26.76 16
13 C 0.06 1.66 3.78 85.56 0.32 1.98 16
14 N -0.51 -14.19 4.76 -881.64 -4.20 -18.39 16
15 C 0.03 0.86 5.35 86.40 0.46 1.32 16
16 C 0.07 1.72 6.24 86.44 0.54 2.26 16
17 N -0.45 -10.54 2.89 -508.69 -1.47 -12.01 16
18 C -0.01 -0.26 11.55 83.36 0.96 0.70 16
19 C -0.22 -4.50 10.87 22.24 0.24 -4.26 16
20 C -0.18 -3.95 8.81 22.03 0.19 -3.75 16
21 C -0.03 -0.71 4.43 40.88 0.18 -0.53 16
22 C 0.20 4.61 2.87 43.41 0.12 4.73 16
23 H 0.11 2.43 8.11 -2.39 -0.02 2.41 16
24 C -0.09 -1.92 3.72 -19.87 -0.07 -1.99 16
25 C -0.11 -2.27 7.06 22.27 0.16 -2.11 16
26 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16
27 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16
28 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16
29 C -0.11 -2.12 9.72 22.27 0.22 -1.90 16
30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
31 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16
32 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16
33 H 0.40 14.53 8.32 -92.71 -0.77 13.76 16
34 H 0.11 3.24 6.38 -2.39 -0.02 3.23 16
35 H 0.07 1.89 6.07 -2.39 -0.01 1.87 16
36 H 0.11 3.65 5.39 -2.39 -0.01 3.64 16
37 H 0.10 2.27 8.07 -2.39 -0.02 2.25 16
38 H 0.07 1.83 6.68 -2.39 -0.02 1.82 16
39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16
40 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16
41 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16
42 H 0.14 2.82 8.04 -2.91 -0.02 2.80 16
43 H 0.12 2.63 6.31 -2.91 -0.02 2.61 16
44 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16
45 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16
46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16
47 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16
Total: -1.00 -68.22 374.77 0.00 -68.23
By element:
Atomic # 1 Polarization: 35.08 SS G_CDS: 0.22 Total: 35.30 kcal
Atomic # 6 Polarization: -8.84 SS G_CDS: 5.77 Total: -3.07 kcal
Atomic # 7 Polarization: -109.70 SS G_CDS: -7.97 Total: -117.68 kcal
Atomic # 8 Polarization: -26.72 SS G_CDS: -0.04 Total: -26.76 kcal
Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal
Total: -68.22 0.00 -68.23 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000914612452.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.905 kcal
(2) G-P(sol) polarization free energy of solvation -68.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds