Wall clock time and date at job start Tue Mar 31 2020 22:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48501 * 109.47434 * 269.99502 * 3 2 1 5 5 H 1.48502 * 109.47371 * 30.00031 * 3 2 1 6 6 H 1.48503 * 109.47246 * 149.99764 * 3 2 1 7 7 C 1.38647 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00578 * 180.02562 * 7 2 1 9 9 O 1.34840 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99899 * 185.05754 * 9 7 2 11 11 C 1.38874 * 120.07308 * 354.46032 * 10 9 7 12 12 C 1.38100 * 119.93349 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06544 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.92758 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47653 * 89.99979 * 14 13 12 16 16 C 1.46954 * 110.99716 * 293.80019 * 15 14 13 17 17 C 1.53053 * 109.36514 * 176.80793 * 16 15 14 18 18 N 1.46955 * 109.36406 * 58.39838 * 17 16 15 19 19 C 1.39167 * 110.99866 * 176.81132 * 18 17 16 20 20 C 1.39475 * 120.86303 * 123.52317 * 19 18 17 21 21 C 1.37897 * 119.06855 * 179.72579 * 20 19 18 22 22 N 1.31994 * 120.84068 * 0.56134 * 21 20 19 23 23 C 1.31998 * 121.91024 * 359.71368 * 22 21 20 24 24 C 1.37901 * 120.84093 * 359.97438 * 23 22 21 25 25 C 1.46954 * 110.88258 * 300.68136 * 18 17 16 26 26 C 1.46955 * 111.00422 * 169.99685 * 15 14 13 27 27 C 1.38304 * 120.13936 * 0.27550 * 13 12 11 28 28 C 1.38100 * 120.06809 * 359.49148 * 27 13 12 29 29 H 0.97000 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03230 * 359.95842 * 11 10 9 31 31 H 1.07999 * 119.96459 * 179.97438 * 12 11 10 32 32 H 1.09004 * 109.47375 * 329.99407 * 14 13 12 33 33 H 1.09006 * 109.47225 * 209.99785 * 14 13 12 34 34 H 1.08993 * 109.49319 * 296.77613 * 16 15 14 35 35 H 1.08999 * 109.49010 * 56.84245 * 16 15 14 36 36 H 1.09003 * 109.48619 * 298.43052 * 17 16 15 37 37 H 1.08994 * 109.48856 * 178.37069 * 17 16 15 38 38 H 1.08005 * 120.46648 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.58000 * 180.25215 * 21 20 19 40 40 H 1.07996 * 119.58179 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.46315 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.48860 * 299.35607 * 25 18 17 43 43 H 1.08993 * 109.51096 * 179.29713 * 25 18 17 44 44 H 1.08995 * 109.48871 * 303.15893 * 26 15 14 45 45 H 1.09001 * 109.48391 * 63.22425 * 26 15 14 46 46 H 1.08007 * 119.96360 * 179.72198 * 27 13 12 47 47 H 1.07997 * 120.03089 * 180.25389 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2049 13 6 3.5686 -5.8200 0.3277 14 6 4.3848 -7.0810 0.4479 15 7 4.6562 -7.3557 1.8652 16 6 5.5267 -6.3231 2.4444 17 6 5.7201 -6.6010 3.9370 18 7 6.3051 -7.9378 4.1119 19 6 6.5621 -8.1978 5.4547 20 6 6.0148 -9.3154 6.0846 21 6 6.2985 -9.5405 7.4152 22 7 7.0673 -8.7090 8.0932 23 6 7.5993 -7.6379 7.5347 24 6 7.3695 -7.3449 6.2069 25 6 5.4345 -8.9704 3.5328 26 6 5.2411 -8.6924 2.0402 27 6 2.1873 -5.8886 0.3353 28 6 1.4365 -4.7343 0.2308 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4845 -0.0005 31 1 5.2812 -4.5469 0.1949 32 1 5.3275 -6.9559 -0.0850 33 1 3.8312 -7.9147 0.0158 34 1 6.4944 -6.3400 1.9430 35 1 5.0662 -5.3439 2.3136 36 1 4.7557 -6.5570 4.4430 37 1 6.3888 -5.8529 4.3625 38 1 5.3809 -9.9971 5.5369 39 1 5.8824 -10.4056 7.9100 40 1 8.2232 -6.9830 8.1248 41 1 7.8075 -6.4666 5.7562 42 1 4.4668 -8.9533 4.0342 43 1 5.8946 -9.9497 3.6636 44 1 4.5724 -9.4405 1.6146 45 1 6.2055 -8.7363 1.5342 46 1 1.6952 -6.8458 0.4269 47 1 0.3579 -4.7882 0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915227439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:54 Heat of formation + Delta-G solvation = 59.464870 kcal Electronic energy + Delta-G solvation = -28190.689969 eV Core-core repulsion = 24339.500788 eV Total energy + Delta-G solvation = -3851.189181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00222 -39.44154 -38.78086 -37.01444 -35.56098 -32.41788 -32.02301 -31.61126 -30.92721 -30.18131 -29.68931 -27.00136 -25.48438 -24.73260 -23.94985 -22.70693 -22.36622 -21.92688 -20.42815 -20.06251 -18.11661 -18.00436 -16.99504 -16.63388 -16.01833 -15.74121 -15.27308 -15.18263 -15.08749 -14.63058 -14.56058 -14.39284 -14.23405 -13.96572 -13.91237 -13.66599 -13.58179 -13.28914 -12.75093 -12.71869 -12.21582 -12.05498 -11.92330 -11.61727 -11.58336 -11.41037 -11.29695 -11.11224 -10.75452 -10.68953 -10.64970 -10.46030 -10.42732 -9.74105 -9.44385 -9.36689 -8.86845 -8.54414 -8.38493 -8.19280 -7.21443 -6.48113 -4.07123 0.89631 1.01501 2.18007 2.23278 3.09918 3.11124 3.15899 3.24634 3.62534 3.83867 3.93930 4.23133 4.38994 4.51488 4.60673 4.72774 4.74514 4.88906 4.95560 5.02215 5.06991 5.09952 5.16078 5.24599 5.26185 5.32335 5.38843 5.45247 5.50246 5.53049 5.60540 5.65887 5.70376 5.73245 5.82601 5.83151 5.90925 6.17928 6.29575 6.38386 6.53252 6.66781 6.76797 6.85867 6.92039 7.00011 7.07519 7.23226 7.35323 7.41124 7.78019 7.79237 7.96719 8.97488 9.67467 10.69826 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002248 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.070561 B =12452.565488 C =13648.663486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.234 4.234 12 C -0.066 4.066 13 C -0.181 4.181 14 C 0.115 3.885 15 N -0.534 5.534 16 C 0.054 3.946 17 C 0.063 3.937 18 N -0.489 5.489 19 C 0.160 3.840 20 C -0.227 4.227 21 C 0.122 3.878 22 N -0.510 5.510 23 C 0.119 3.881 24 C -0.197 4.197 25 C 0.053 3.947 26 C 0.054 3.946 27 C -0.052 4.052 28 C -0.194 4.194 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.111 0.889 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.266 -17.379 8.145 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.085 4.085 13 C -0.183 4.183 14 C -0.011 4.011 15 N -0.259 5.259 16 C -0.074 4.074 17 C -0.062 4.062 18 N -0.204 5.204 19 C 0.053 3.947 20 C -0.250 4.250 21 C -0.035 4.035 22 N -0.221 5.221 23 C -0.037 4.037 24 C -0.220 4.220 25 C -0.074 4.074 26 C -0.074 4.074 27 C -0.071 4.071 28 C -0.214 4.214 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.171 0.829 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.059 0.941 46 H 0.129 0.871 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.969 -17.291 8.896 23.373 hybrid contribution 0.506 0.999 -1.046 1.532 sum 13.475 -16.292 7.850 22.552 Atomic orbital electron populations 1.70036 1.05963 1.27703 1.45966 1.25289 0.95842 0.98847 0.96538 0.85720 0.78927 0.80109 0.78723 1.19874 1.20225 1.19201 1.21315 0.91765 0.80821 1.52924 0.89094 1.83983 1.34382 1.11485 1.78212 1.19400 0.90279 0.88061 0.92056 1.21116 0.93823 0.98792 1.11625 1.20587 0.97961 0.91947 0.98007 1.19033 0.93581 0.93322 1.12316 1.20775 0.97498 0.96244 0.86606 1.62237 1.45159 1.01232 1.17282 1.22253 0.95339 0.97197 0.92645 1.22371 0.98698 0.87439 0.97742 1.58992 1.44874 1.05020 1.11489 1.19289 0.93256 0.94212 0.87933 1.22285 1.04422 1.01363 0.96959 1.22584 0.92983 0.97102 0.90864 1.67726 1.10505 1.04477 1.39405 1.22610 0.95653 0.93398 0.92043 1.21822 1.02221 1.02223 0.95710 1.22392 0.95373 0.94316 0.95293 1.22172 0.98475 0.91994 0.94749 1.20443 0.92791 0.96647 0.97207 1.20221 0.99577 0.90361 1.11198 0.91990 0.85652 0.87955 0.94796 0.90684 0.94138 0.88416 0.92414 0.89520 0.84499 0.82911 0.82715 0.84641 0.92262 0.89668 0.89745 0.94076 0.87134 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.06 13.67 55.48 0.76 -24.30 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 7 C -0.39 -10.80 9.49 30.88 0.29 -10.50 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 9 O -0.18 -5.00 9.76 0.02 0.00 -5.00 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.23 -4.90 9.17 -39.40 -0.36 -5.26 16 12 C -0.07 -1.14 7.91 -39.61 -0.31 -1.45 16 13 C -0.18 -2.89 4.90 -104.58 -0.51 -3.41 16 14 C 0.12 1.44 5.12 -4.98 -0.03 1.42 16 15 N -0.53 -6.29 4.70 -235.91 -1.11 -7.39 16 16 C 0.05 0.63 5.25 -3.77 -0.02 0.61 16 17 C 0.06 0.66 5.39 -3.77 -0.02 0.64 16 18 N -0.49 -4.88 4.75 -170.76 -0.81 -5.69 16 19 C 0.16 1.59 5.65 -83.61 -0.47 1.12 16 20 C -0.23 -2.03 8.88 -39.25 -0.35 -2.38 16 21 C 0.12 1.11 11.17 -17.61 -0.20 0.92 16 22 N -0.51 -5.48 10.36 -13.35 -0.14 -5.61 16 23 C 0.12 1.11 11.17 -17.60 -0.20 0.91 16 24 C -0.20 -1.84 9.28 -39.25 -0.36 -2.21 16 25 C 0.05 0.47 4.31 -3.77 -0.02 0.45 16 26 C 0.05 0.51 5.61 -3.77 -0.02 0.49 16 27 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 28 C -0.19 -4.01 9.99 -39.40 -0.39 -4.40 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.13 2.65 5.64 -52.48 -0.30 2.35 16 31 H 0.10 1.51 7.99 -52.49 -0.42 1.09 16 32 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 33 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.10 1.32 5.95 -51.93 -0.31 1.01 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.82 6.89 -51.93 -0.36 0.46 16 38 H 0.14 0.98 5.97 -52.48 -0.31 0.67 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.08 7.27 -52.49 -0.38 0.70 16 42 H 0.06 0.55 7.61 -51.93 -0.40 0.16 16 43 H 0.09 0.62 7.22 -51.93 -0.38 0.25 16 44 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 45 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -31.27 378.04 -10.80 -42.07 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.47 Total: 4.94 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.71 Total: -19.94 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.30 Total: -43.00 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: 0.00 Total: -5.00 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.27 -10.80 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915227439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.534 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds