Wall clock time and date at job start Tue Mar 31 2020 22:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48501 * 109.47434 * 269.99502 * 3 2 1 5 5 H 1.48502 * 109.47371 * 30.00031 * 3 2 1 6 6 H 1.48503 * 109.47246 * 149.99764 * 3 2 1 7 7 C 1.38647 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00578 * 180.02562 * 7 2 1 9 9 O 1.34840 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99899 * 185.05754 * 9 7 2 11 11 C 1.38874 * 120.07308 * 354.46032 * 10 9 7 12 12 C 1.38100 * 119.93349 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06544 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.92758 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47653 * 89.99979 * 14 13 12 16 16 C 1.46954 * 110.99716 * 293.80019 * 15 14 13 17 17 C 1.53053 * 109.36514 * 176.80793 * 16 15 14 18 18 N 1.46955 * 109.36406 * 58.39838 * 17 16 15 19 19 C 1.39167 * 110.99866 * 176.81132 * 18 17 16 20 20 C 1.39475 * 120.86303 * 123.52317 * 19 18 17 21 21 C 1.37897 * 119.06855 * 179.72579 * 20 19 18 22 22 N 1.31994 * 120.84068 * 0.56134 * 21 20 19 23 23 C 1.31998 * 121.91024 * 359.71368 * 22 21 20 24 24 C 1.37901 * 120.84093 * 359.97438 * 23 22 21 25 25 C 1.46954 * 110.88258 * 300.68136 * 18 17 16 26 26 C 1.46955 * 111.00422 * 169.99685 * 15 14 13 27 27 C 1.38304 * 120.13936 * 0.27550 * 13 12 11 28 28 C 1.38100 * 120.06809 * 359.49148 * 27 13 12 29 29 H 0.97000 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03230 * 359.95842 * 11 10 9 31 31 H 1.07999 * 119.96459 * 179.97438 * 12 11 10 32 32 H 1.09004 * 109.47375 * 329.99407 * 14 13 12 33 33 H 1.09006 * 109.47225 * 209.99785 * 14 13 12 34 34 H 1.08993 * 109.49319 * 296.77613 * 16 15 14 35 35 H 1.08999 * 109.49010 * 56.84245 * 16 15 14 36 36 H 1.09003 * 109.48619 * 298.43052 * 17 16 15 37 37 H 1.08994 * 109.48856 * 178.37069 * 17 16 15 38 38 H 1.08005 * 120.46648 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.58000 * 180.25215 * 21 20 19 40 40 H 1.07996 * 119.58179 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.46315 * 179.97438 * 24 23 22 42 42 H 1.09005 * 109.48860 * 299.35607 * 25 18 17 43 43 H 1.08993 * 109.51096 * 179.29713 * 25 18 17 44 44 H 1.08995 * 109.48871 * 303.15893 * 26 15 14 45 45 H 1.09001 * 109.48391 * 63.22425 * 26 15 14 46 46 H 1.08007 * 119.96360 * 179.72198 * 27 13 12 47 47 H 1.07997 * 120.03089 * 180.25389 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5470 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0700 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5969 0.2049 13 6 3.5686 -5.8200 0.3277 14 6 4.3848 -7.0810 0.4479 15 7 4.6562 -7.3557 1.8652 16 6 5.5267 -6.3231 2.4444 17 6 5.7201 -6.6010 3.9370 18 7 6.3051 -7.9378 4.1119 19 6 6.5621 -8.1978 5.4547 20 6 6.0148 -9.3154 6.0846 21 6 6.2985 -9.5405 7.4152 22 7 7.0673 -8.7090 8.0932 23 6 7.5993 -7.6379 7.5347 24 6 7.3695 -7.3449 6.2069 25 6 5.4345 -8.9704 3.5328 26 6 5.2411 -8.6924 2.0402 27 6 2.1873 -5.8886 0.3353 28 6 1.4365 -4.7343 0.2308 29 1 -0.4850 0.8400 0.0004 30 1 3.9527 -2.4845 -0.0005 31 1 5.2812 -4.5469 0.1949 32 1 5.3275 -6.9559 -0.0850 33 1 3.8312 -7.9147 0.0158 34 1 6.4944 -6.3400 1.9430 35 1 5.0662 -5.3439 2.3136 36 1 4.7557 -6.5570 4.4430 37 1 6.3888 -5.8529 4.3625 38 1 5.3809 -9.9971 5.5369 39 1 5.8824 -10.4056 7.9100 40 1 8.2232 -6.9830 8.1248 41 1 7.8075 -6.4666 5.7562 42 1 4.4668 -8.9533 4.0342 43 1 5.8946 -9.9497 3.6636 44 1 4.5724 -9.4405 1.6146 45 1 6.2055 -8.7363 1.5342 46 1 1.6952 -6.8458 0.4269 47 1 0.3579 -4.7882 0.2409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915227439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:53 Heat of formation + Delta-G solvation = 39.027584 kcal Electronic energy + Delta-G solvation = -28191.576196 eV Core-core repulsion = 24339.500788 eV Total energy + Delta-G solvation = -3852.075408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73079 -40.84406 -39.87806 -38.44262 -36.64858 -34.31468 -32.76901 -32.60416 -31.86794 -31.55235 -30.84727 -28.14044 -27.26818 -25.50267 -25.06573 -23.71367 -23.29307 -23.13557 -21.87951 -20.88352 -19.82490 -18.84330 -18.78155 -17.37487 -16.80157 -16.62548 -16.47264 -16.36664 -16.19027 -15.89084 -15.73762 -15.50981 -15.42573 -15.16229 -14.99393 -14.72355 -14.61322 -14.39084 -14.24420 -14.10731 -13.58496 -13.17545 -12.98047 -12.82599 -12.75539 -12.53640 -12.33741 -12.28746 -12.26309 -12.13282 -11.88406 -11.73241 -11.27551 -11.15336 -10.79070 -10.44846 -10.11207 -9.74834 -9.34281 -9.23509 -8.87623 -8.46978 -6.15006 0.22761 0.29606 0.61853 0.69060 1.34557 1.43627 1.51923 2.17445 2.52333 2.72140 2.93501 3.01147 3.29776 3.54379 3.62995 3.69080 3.81294 3.88966 4.04633 4.07856 4.09793 4.20333 4.22281 4.27125 4.31283 4.38864 4.43030 4.51184 4.57405 4.62930 4.71255 4.75648 4.81014 4.82364 4.87358 4.90682 4.92647 5.01867 5.07116 5.10577 5.15927 5.32138 5.58920 5.61543 5.72899 5.77838 5.82618 6.00746 6.03515 6.13180 6.14476 6.26696 6.97942 7.09762 7.79662 8.76340 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014304 B = 0.002248 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.070561 B =12452.565488 C =13648.663486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.113 3.887 11 C -0.242 4.242 12 C -0.061 4.061 13 C -0.152 4.152 14 C 0.118 3.882 15 N -0.545 5.545 16 C 0.057 3.943 17 C 0.068 3.932 18 N -0.490 5.490 19 C 0.144 3.856 20 C -0.227 4.227 21 C 0.112 3.888 22 N -0.535 5.535 23 C 0.110 3.890 24 C -0.203 4.203 25 C 0.053 3.947 26 C 0.058 3.942 27 C -0.046 4.046 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.116 0.884 31 H 0.134 0.866 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.145 0.855 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.044 0.956 46 H 0.146 0.854 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.932 -19.962 8.418 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.488 4.488 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.063 3.937 11 C -0.262 4.262 12 C -0.079 4.079 13 C -0.153 4.153 14 C -0.009 4.009 15 N -0.270 5.270 16 C -0.071 4.071 17 C -0.057 4.057 18 N -0.205 5.205 19 C 0.038 3.962 20 C -0.250 4.250 21 C -0.044 4.044 22 N -0.247 5.247 23 C -0.046 4.046 24 C -0.226 4.226 25 C -0.074 4.074 26 C -0.070 4.070 27 C -0.065 4.065 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.152 0.848 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.112 0.888 38 H 0.173 0.827 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.063 0.937 46 H 0.163 0.837 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.674 -19.942 9.177 26.974 hybrid contribution -0.181 1.397 -1.061 1.763 sum 15.493 -18.545 8.116 25.492 Atomic orbital electron populations 1.70185 1.08025 1.28742 1.49027 1.26580 0.96845 1.02746 0.95967 0.84602 0.77826 0.74635 0.79252 1.18797 1.19669 1.17625 1.21799 0.92458 0.81454 1.53064 0.88141 1.83946 1.36014 1.12634 1.81489 1.19949 0.91662 0.87912 0.94169 1.21204 0.93013 0.99975 1.11964 1.20908 0.99383 0.91089 0.96551 1.19559 0.93545 0.94641 1.07584 1.20794 0.97743 0.94706 0.87632 1.62161 1.45961 1.02466 1.16447 1.22166 0.95329 0.96254 0.93388 1.22256 0.98128 0.88432 0.96915 1.59023 1.45033 1.04799 1.11672 1.19481 0.93774 0.94872 0.88121 1.22491 1.04231 1.01285 0.96995 1.23008 0.92649 0.97548 0.91196 1.67755 1.11361 1.05270 1.40295 1.22971 0.95749 0.93438 0.92398 1.21997 1.02189 1.02566 0.95821 1.22463 0.95181 0.94853 0.94866 1.22243 0.98930 0.90705 0.95134 1.20836 0.93384 0.96690 0.95570 1.20469 0.99868 0.90726 1.11556 0.91890 0.86596 0.84831 0.93407 0.88425 0.93529 0.90545 0.94112 0.88808 0.82737 0.80723 0.80814 0.83694 0.92742 0.87810 0.87836 0.93742 0.83667 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.75 13.67 21.61 0.30 -56.46 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 8 H 0.10 5.35 5.20 -2.91 -0.02 5.34 16 9 O -0.23 -14.11 9.76 -22.83 -0.22 -14.33 16 10 C 0.11 5.60 6.65 22.58 0.15 5.75 16 11 C -0.24 -10.29 9.17 22.39 0.21 -10.09 16 12 C -0.06 -1.98 7.91 22.25 0.18 -1.80 16 13 C -0.15 -4.40 4.90 -19.84 -0.10 -4.49 16 14 C 0.12 2.40 5.12 85.56 0.44 2.84 16 15 N -0.55 -10.73 4.70 -900.29 -4.23 -14.96 16 16 C 0.06 1.17 5.25 86.31 0.45 1.63 16 17 C 0.07 1.31 5.39 86.31 0.46 1.77 16 18 N -0.49 -8.48 4.75 -694.18 -3.30 -11.78 16 19 C 0.14 2.57 5.65 38.57 0.22 2.79 16 20 C -0.23 -3.54 8.88 22.49 0.20 -3.34 16 21 C 0.11 1.85 11.17 84.59 0.95 2.79 16 22 N -0.54 -10.75 10.36 -196.16 -2.03 -12.78 16 23 C 0.11 1.90 11.17 84.59 0.95 2.85 16 24 C -0.20 -3.47 9.28 22.49 0.21 -3.26 16 25 C 0.05 0.75 4.31 86.31 0.37 1.12 16 26 C 0.06 0.83 5.61 86.31 0.48 1.31 16 27 C -0.05 -1.50 9.69 22.25 0.22 -1.28 16 28 C -0.21 -8.71 9.99 22.39 0.22 -8.48 16 29 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 30 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 31 H 0.13 3.52 7.99 -2.91 -0.02 3.50 16 32 H 0.05 0.90 8.06 -2.38 -0.02 0.88 16 33 H 0.10 1.65 7.97 -2.38 -0.02 1.63 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.90 5.95 -2.39 -0.01 1.89 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 37 H 0.09 1.63 6.89 -2.39 -0.02 1.61 16 38 H 0.16 1.74 5.97 -2.91 -0.02 1.73 16 39 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.15 2.08 7.27 -2.91 -0.02 2.06 16 42 H 0.05 0.84 7.61 -2.38 -0.02 0.82 16 43 H 0.10 1.10 7.22 -2.39 -0.02 1.08 16 44 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 45 H 0.04 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 47 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -73.20 378.04 0.23 -72.97 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.98 Total: 26.64 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 6.71 Total: -34.10 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -9.27 Total: -95.98 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.22 Total: -14.33 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -73.20 0.23 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915227439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.997 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds