Wall clock time and date at job start Tue Mar 31 2020 22:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48503 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46838 * 299.99429 * 3 2 1 6 6 H 1.48498 * 109.47093 * 59.99391 * 3 2 1 7 7 C 1.37871 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00580 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47453 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99477 * 89.99907 * 10 9 7 12 12 O 1.21288 * 120.00354 * 3.74037 * 11 10 9 13 13 C 1.50700 * 119.99700 * 183.74212 * 11 10 9 14 14 N 1.46902 * 109.47226 * 185.93884 * 13 11 10 15 15 C 1.46947 * 111.00208 * 180.55853 * 14 13 11 16 16 C 1.53358 * 109.78554 * 164.63738 * 15 14 13 17 17 N 1.46805 * 108.21524 * 50.18326 * 16 15 14 18 18 C 1.35723 * 128.03313 * 163.41452 * 17 16 15 19 19 C 1.35066 * 108.16600 * 180.21065 * 18 17 16 20 20 C 1.41105 * 107.48607 * 359.93663 * 19 18 17 21 21 C 1.34124 * 107.32254 * 359.95727 * 20 19 18 22 22 C 1.47363 * 110.99473 * 56.41087 * 14 13 11 23 23 C 1.39918 * 120.00136 * 270.00318 * 10 9 7 24 24 C 1.38879 * 120.06904 * 109.33227 * 23 10 9 25 25 C 1.38114 * 119.92625 * 179.76725 * 24 23 10 26 26 C 1.38285 * 120.07258 * 0.47938 * 25 24 23 27 27 C 1.38285 * 120.13674 * 359.77106 * 26 25 24 28 28 C 1.38114 * 120.07393 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47452 * 59.99866 * 9 7 2 31 31 H 1.08998 * 109.47364 * 299.99718 * 9 7 2 32 32 H 1.09004 * 109.47565 * 65.93749 * 13 11 10 33 33 H 1.09003 * 109.46755 * 305.93590 * 13 11 10 34 34 H 1.09002 * 109.42064 * 44.53755 * 15 14 13 35 35 H 1.09001 * 109.42214 * 284.73317 * 15 14 13 36 36 H 1.09003 * 109.71672 * 169.86696 * 16 15 14 37 37 H 1.09005 * 109.71371 * 290.45701 * 16 15 14 38 38 H 1.08005 * 125.92009 * 0.17511 * 18 17 16 39 39 H 1.08001 * 126.25809 * 179.97438 * 19 18 17 40 40 H 1.08000 * 126.33982 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.77357 * 54.59403 * 22 14 13 42 42 H 1.08992 * 109.78748 * 293.86720 * 22 14 13 43 43 H 1.08000 * 120.03525 * 359.96790 * 24 23 10 44 44 H 1.08003 * 119.96582 * 180.25613 * 25 24 23 45 45 H 1.07996 * 119.93030 * 179.75093 * 26 25 24 46 46 H 1.08008 * 119.95963 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.03488 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6409 -4.1248 1.1678 12 8 2.1960 -3.7098 2.2171 13 6 3.6833 -5.2131 1.1693 14 7 3.8853 -5.6959 2.5419 15 6 4.9070 -6.7512 2.5840 16 6 5.3724 -6.9658 4.0294 17 7 4.1834 -7.1296 4.8748 18 6 4.1143 -7.6376 6.1315 19 6 2.8237 -7.6056 6.5283 20 6 2.0688 -7.0536 5.4717 21 6 2.9223 -6.7705 4.4765 22 6 2.6165 -6.1605 3.1302 23 6 2.6577 -4.1444 -1.2112 24 6 3.9698 -3.9338 -1.6148 25 6 4.4168 -4.4641 -2.8091 26 6 3.5568 -5.1957 -3.6075 27 6 2.2483 -5.4027 -3.2109 28 6 1.7963 -4.8787 -2.0157 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 4.6221 -4.8176 0.7814 33 1 3.3486 -6.0376 0.5396 34 1 5.7577 -6.4568 1.9693 35 1 4.4858 -7.6792 2.1974 36 1 5.9910 -7.8614 4.0874 37 1 5.9455 -6.1009 4.3634 38 1 4.9471 -8.0045 6.7132 39 1 2.4397 -7.9407 7.4805 40 1 1.0014 -6.8892 5.4655 41 1 2.1614 -6.9089 2.4815 42 1 1.9366 -5.3176 3.2536 43 1 4.6407 -3.3588 -0.9938 44 1 5.4382 -4.3043 -3.1216 45 1 3.9077 -5.6059 -4.5429 46 1 1.5790 -5.9742 -3.8369 47 1 0.7741 -5.0404 -1.7067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932529931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:35 Heat of formation + Delta-G solvation = 73.705725 kcal Electronic energy + Delta-G solvation = -29466.405484 eV Core-core repulsion = 25615.833833 eV Total energy + Delta-G solvation = -3850.571651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.41026 -40.03860 -38.43438 -36.91223 -34.88233 -33.18375 -32.71137 -30.83067 -30.37789 -29.47159 -28.89810 -27.58459 -26.11001 -24.58138 -23.01134 -22.57071 -22.20052 -21.68287 -20.38498 -19.04630 -18.55645 -17.44385 -16.96351 -16.50195 -16.10312 -15.89721 -15.76041 -15.13477 -14.83757 -14.62852 -14.48584 -14.19173 -13.93112 -13.62647 -13.43968 -13.42372 -13.22238 -12.81966 -12.45575 -12.37183 -12.15358 -12.08393 -11.98514 -11.67459 -11.56734 -11.47837 -11.28265 -11.22384 -10.98568 -10.86459 -10.67394 -10.19840 -9.73288 -9.31931 -8.77039 -8.72742 -8.50005 -8.46448 -8.33737 -7.81885 -7.73119 -6.08615 -4.13179 1.48610 1.56755 2.37663 2.92450 3.15042 3.18803 3.28487 3.36099 3.38562 3.45031 3.91988 3.98546 4.42097 4.45279 4.72974 4.74456 4.93517 4.99835 5.10326 5.11467 5.14623 5.26815 5.28836 5.29522 5.32429 5.39342 5.50240 5.61435 5.64492 5.71847 5.73946 5.74880 5.96072 6.08456 6.18875 6.36984 6.46621 6.52379 6.65469 6.73078 6.74730 6.85391 6.95935 7.13941 7.19024 7.31833 7.34781 7.43258 7.51060 7.86895 8.15007 8.27720 8.80232 8.94673 9.51671 10.99824 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003703 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.763356 B = 7560.495942 C = 9350.513809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.249 3.751 10 N -0.562 5.562 11 C 0.514 3.486 12 O -0.508 6.508 13 C 0.040 3.960 14 N -0.521 5.521 15 C 0.041 3.959 16 C 0.114 3.886 17 N -0.446 5.446 18 C -0.018 4.018 19 C -0.204 4.204 20 C -0.195 4.195 21 C 0.031 3.969 22 C 0.109 3.891 23 C 0.161 3.839 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.133 4.133 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.263 0.737 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.044 0.956 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.432 -17.776 -0.377 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.291 5.291 11 C 0.301 3.699 12 O -0.383 6.383 13 C -0.091 4.091 14 N -0.246 5.246 15 C -0.088 4.088 16 C -0.008 4.008 17 N -0.123 5.123 18 C -0.148 4.148 19 C -0.229 4.229 20 C -0.220 4.220 21 C -0.080 4.080 22 C -0.018 4.018 23 C 0.069 3.931 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.152 4.152 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.062 0.938 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.503 -16.966 0.317 19.957 hybrid contribution 0.262 0.451 -0.586 0.785 sum 10.766 -16.515 -0.269 19.716 Atomic orbital electron populations 1.69935 1.05980 1.27019 1.50271 1.24902 0.94879 0.99202 0.94926 0.86434 0.80007 0.83328 0.77627 1.19776 1.20934 1.20793 1.21387 0.93380 0.90410 1.51308 0.92346 1.19443 0.87134 0.81486 0.98814 1.45970 1.45994 1.34871 1.02269 1.20101 0.82701 0.83265 0.83805 1.90632 1.57067 1.60496 1.30083 1.22103 1.00365 0.97289 0.89327 1.61813 1.08909 1.35084 1.18784 1.22376 0.96849 0.94026 0.95543 1.22010 0.86541 1.02524 0.89696 1.44100 1.06983 1.48246 1.12982 1.21556 0.98861 1.07591 0.86747 1.20886 0.92698 1.09152 1.00166 1.20411 0.99056 1.08437 0.94050 1.20404 0.84243 1.05558 0.97813 1.21318 0.91900 0.99590 0.89035 1.17750 0.92626 0.94433 0.88285 1.21419 0.96057 0.99677 0.97120 1.20989 0.99637 0.98000 0.94335 1.21076 0.94011 1.00328 0.99744 1.20979 0.95870 1.00044 0.96015 1.21343 1.00104 0.97670 0.95260 0.92688 0.94748 0.93242 0.87723 0.92308 0.88636 0.93716 0.89435 0.89484 0.82529 0.84935 0.84763 0.93785 0.85072 0.85803 0.86111 0.86371 0.86086 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 7 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.39 5.15 -5.19 -0.03 6.36 16 10 N -0.56 -11.66 2.50 -114.74 -0.29 -11.95 16 11 C 0.51 10.32 7.21 -10.98 -0.08 10.24 16 12 O -0.51 -12.17 13.41 5.55 0.07 -12.10 16 13 C 0.04 0.60 4.08 -4.97 -0.02 0.57 16 14 N -0.52 -7.71 4.53 -236.70 -1.07 -8.78 16 15 C 0.04 0.43 5.53 -3.61 -0.02 0.41 16 16 C 0.11 1.15 7.23 -3.69 -0.03 1.13 16 17 N -0.45 -5.94 3.15 -112.14 -0.35 -6.29 16 18 C -0.02 -0.22 11.55 -16.96 -0.20 -0.42 16 19 C -0.20 -2.71 10.87 -39.62 -0.43 -3.14 16 20 C -0.20 -2.93 10.81 -39.94 -0.43 -3.36 16 21 C 0.03 0.48 6.64 -81.60 -0.54 -0.06 16 22 C 0.11 1.73 5.24 -4.61 -0.02 1.70 16 23 C 0.16 2.77 4.27 -83.70 -0.36 2.42 16 24 C -0.12 -1.86 8.61 -39.39 -0.34 -2.20 16 25 C -0.11 -1.36 10.04 -39.61 -0.40 -1.76 16 26 C -0.13 -1.53 10.04 -39.55 -0.40 -1.93 16 27 C -0.11 -1.37 10.04 -39.61 -0.40 -1.77 16 28 C -0.12 -1.89 9.79 -39.39 -0.39 -2.28 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 31 H 0.05 1.42 7.37 -51.93 -0.38 1.03 16 32 H 0.10 1.40 7.17 -51.93 -0.37 1.03 16 33 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 34 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 35 H 0.04 0.46 8.07 -51.93 -0.42 0.04 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.13 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 42 H 0.13 2.50 5.49 -51.93 -0.29 2.22 16 43 H 0.12 1.89 7.87 -52.49 -0.41 1.47 16 44 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 47 H 0.12 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 386.35 15.07 5.82 5.82 Total: -1.00 -33.77 386.35 -11.47 -45.25 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.88 Total: 4.25 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -4.49 Total: -7.45 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.98 Total: -52.62 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.77 -11.47 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932529931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.951 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds