Wall clock time and date at job start Tue Mar 31 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48503 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46838 * 299.99429 * 3 2 1 6 6 H 1.48498 * 109.47093 * 59.99391 * 3 2 1 7 7 C 1.37871 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00580 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99939 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47453 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99477 * 89.99907 * 10 9 7 12 12 O 1.21288 * 120.00354 * 3.74037 * 11 10 9 13 13 C 1.50700 * 119.99700 * 183.74212 * 11 10 9 14 14 N 1.46902 * 109.47226 * 185.93884 * 13 11 10 15 15 C 1.46947 * 111.00208 * 180.55853 * 14 13 11 16 16 C 1.53358 * 109.78554 * 164.63738 * 15 14 13 17 17 N 1.46805 * 108.21524 * 50.18326 * 16 15 14 18 18 C 1.35723 * 128.03313 * 163.41452 * 17 16 15 19 19 C 1.35066 * 108.16600 * 180.21065 * 18 17 16 20 20 C 1.41105 * 107.48607 * 359.93663 * 19 18 17 21 21 C 1.34124 * 107.32254 * 359.95727 * 20 19 18 22 22 C 1.47363 * 110.99473 * 56.41087 * 14 13 11 23 23 C 1.39918 * 120.00136 * 270.00318 * 10 9 7 24 24 C 1.38879 * 120.06904 * 109.33227 * 23 10 9 25 25 C 1.38114 * 119.92625 * 179.76725 * 24 23 10 26 26 C 1.38285 * 120.07258 * 0.47938 * 25 24 23 27 27 C 1.38285 * 120.13674 * 359.77106 * 26 25 24 28 28 C 1.38114 * 120.07393 * 0.02562 * 27 26 25 29 29 H 0.97004 * 119.99957 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47452 * 59.99866 * 9 7 2 31 31 H 1.08998 * 109.47364 * 299.99718 * 9 7 2 32 32 H 1.09004 * 109.47565 * 65.93749 * 13 11 10 33 33 H 1.09003 * 109.46755 * 305.93590 * 13 11 10 34 34 H 1.09002 * 109.42064 * 44.53755 * 15 14 13 35 35 H 1.09001 * 109.42214 * 284.73317 * 15 14 13 36 36 H 1.09003 * 109.71672 * 169.86696 * 16 15 14 37 37 H 1.09005 * 109.71371 * 290.45701 * 16 15 14 38 38 H 1.08005 * 125.92009 * 0.17511 * 18 17 16 39 39 H 1.08001 * 126.25809 * 179.97438 * 19 18 17 40 40 H 1.08000 * 126.33982 * 179.97438 * 20 19 18 41 41 H 1.08999 * 109.77357 * 54.59403 * 22 14 13 42 42 H 1.08992 * 109.78748 * 293.86720 * 22 14 13 43 43 H 1.08000 * 120.03525 * 359.96790 * 24 23 10 44 44 H 1.08003 * 119.96582 * 180.25613 * 25 24 23 45 45 H 1.07996 * 119.93030 * 179.75093 * 26 25 24 46 46 H 1.08008 * 119.95963 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.03488 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6409 -4.1248 1.1678 12 8 2.1960 -3.7098 2.2171 13 6 3.6833 -5.2131 1.1693 14 7 3.8853 -5.6959 2.5419 15 6 4.9070 -6.7512 2.5840 16 6 5.3724 -6.9658 4.0294 17 7 4.1834 -7.1296 4.8748 18 6 4.1143 -7.6376 6.1315 19 6 2.8237 -7.6056 6.5283 20 6 2.0688 -7.0536 5.4717 21 6 2.9223 -6.7705 4.4765 22 6 2.6165 -6.1605 3.1302 23 6 2.6577 -4.1444 -1.2112 24 6 3.9698 -3.9338 -1.6148 25 6 4.4168 -4.4641 -2.8091 26 6 3.5568 -5.1957 -3.6075 27 6 2.2483 -5.4027 -3.2109 28 6 1.7963 -4.8787 -2.0157 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 4.6221 -4.8176 0.7814 33 1 3.3486 -6.0376 0.5396 34 1 5.7577 -6.4568 1.9693 35 1 4.4858 -7.6792 2.1974 36 1 5.9910 -7.8614 4.0874 37 1 5.9455 -6.1009 4.3634 38 1 4.9471 -8.0045 6.7132 39 1 2.4397 -7.9407 7.4805 40 1 1.0014 -6.8892 5.4655 41 1 2.1614 -6.9089 2.4815 42 1 1.9366 -5.3176 3.2536 43 1 4.6407 -3.3588 -0.9938 44 1 5.4382 -4.3043 -3.1216 45 1 3.9077 -5.6059 -4.5429 46 1 1.5790 -5.9742 -3.8369 47 1 0.7741 -5.0404 -1.7067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932529931.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:34 Heat of formation + Delta-G solvation = 53.441664 kcal Electronic energy + Delta-G solvation = -29467.284200 eV Core-core repulsion = 25615.833833 eV Total energy + Delta-G solvation = -3851.450367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44131 -41.44287 -39.65776 -38.09920 -36.46872 -34.81422 -34.15340 -31.94811 -31.54864 -30.87035 -29.97615 -29.11004 -27.54026 -25.75258 -24.71344 -23.76632 -23.33592 -22.82809 -21.42754 -20.42219 -19.56905 -18.75429 -18.64436 -18.02861 -17.47554 -17.07015 -16.88868 -16.58078 -16.35304 -15.83888 -15.69651 -15.59307 -15.11244 -14.82032 -14.56243 -14.47457 -14.38858 -14.27265 -14.10104 -13.58439 -13.40656 -13.21156 -13.13966 -13.02726 -12.96442 -12.77078 -12.67334 -12.58629 -12.44056 -12.25271 -12.11220 -12.08480 -11.70525 -10.85383 -10.68796 -10.06322 -9.82321 -9.62989 -9.42533 -9.27947 -8.86176 -8.26249 -6.40947 0.36855 0.51017 1.32975 1.33589 1.36297 1.47627 1.64875 1.92154 2.09352 2.13124 2.36574 2.76501 2.87912 3.04101 3.49575 3.61186 3.77680 4.00197 4.07353 4.09853 4.13660 4.20518 4.27022 4.32374 4.33865 4.41304 4.54041 4.61093 4.64538 4.67725 4.71493 4.75955 4.78132 4.88151 4.99324 5.10714 5.16770 5.33145 5.39600 5.43634 5.54789 5.62716 5.63546 5.67499 5.76940 5.84568 5.99247 6.08501 6.11583 6.26280 6.58684 6.65120 6.72150 7.22551 7.37150 8.81459 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009694 B = 0.003703 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.763356 B = 7560.495942 C = 9350.513809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.054 0.946 9 C 0.267 3.733 10 N -0.564 5.564 11 C 0.504 3.496 12 O -0.562 6.562 13 C 0.061 3.939 14 N -0.540 5.540 15 C 0.039 3.961 16 C 0.109 3.891 17 N -0.448 5.448 18 C -0.005 4.005 19 C -0.225 4.225 20 C -0.219 4.219 21 C 0.002 3.998 22 C 0.118 3.882 23 C 0.123 3.877 24 C -0.132 4.132 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.105 4.105 28 C -0.142 4.142 29 H 0.268 0.732 30 H 0.018 0.982 31 H 0.004 0.996 32 H 0.127 0.873 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.052 0.948 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.197 0.803 39 H 0.150 0.850 40 H 0.127 0.873 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.150 0.850 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.555 -19.445 -2.280 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.072 0.928 9 C 0.147 3.853 10 N -0.292 5.292 11 C 0.293 3.707 12 O -0.440 6.440 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.088 4.088 16 C -0.012 4.012 17 N -0.125 5.125 18 C -0.135 4.135 19 C -0.249 4.249 20 C -0.244 4.244 21 C -0.110 4.110 22 C -0.010 4.010 23 C 0.032 3.968 24 C -0.152 4.152 25 C -0.120 4.120 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.036 0.964 31 H 0.022 0.978 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.214 0.786 39 H 0.168 0.832 40 H 0.145 0.855 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.135 0.865 44 H 0.173 0.827 45 H 0.177 0.823 46 H 0.168 0.832 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.665 -18.675 -1.630 23.801 hybrid contribution -1.038 0.891 -0.049 1.369 sum 13.626 -17.784 -1.680 22.467 Atomic orbital electron populations 1.70059 1.07585 1.28155 1.50951 1.25842 0.95795 1.03022 0.94322 0.85363 0.78867 0.78589 0.77996 1.18928 1.19383 1.20684 1.21638 0.93240 0.91618 1.51309 0.92773 1.18797 0.87588 0.83210 0.95659 1.45778 1.45198 1.33824 1.04439 1.21133 0.83019 0.83835 0.82708 1.90614 1.59032 1.62434 1.31912 1.21935 0.99047 0.95744 0.90154 1.61756 1.09060 1.37258 1.18442 1.22569 0.96389 0.93023 0.96816 1.22336 0.85637 1.04596 0.88585 1.44379 1.06964 1.47518 1.13632 1.22194 0.99529 1.05544 0.86244 1.21188 0.93313 1.09855 1.00563 1.20662 0.99255 1.09211 0.95257 1.20346 0.85808 1.07077 0.97721 1.20948 0.92136 0.97850 0.90069 1.18009 0.94299 0.96815 0.87648 1.21438 0.94859 1.00364 0.98497 1.21367 1.01354 0.96569 0.92664 1.21567 0.92998 0.98457 1.00583 1.21323 0.97112 0.99199 0.94711 1.21398 0.99451 0.98685 0.96597 0.92357 0.96416 0.97836 0.85567 0.90446 0.85567 0.92935 0.85343 0.89295 0.78573 0.83195 0.85530 0.93609 0.89519 0.86479 0.82675 0.82312 0.83236 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 8 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 9 C 0.27 14.92 5.15 85.63 0.44 15.36 16 10 N -0.56 -25.10 2.50 -635.30 -1.59 -26.69 16 11 C 0.50 21.70 7.21 87.66 0.63 22.33 16 12 O -0.56 -29.62 13.41 -3.06 -0.04 -29.66 16 13 C 0.06 1.85 4.08 85.56 0.35 2.19 16 14 N -0.54 -16.04 4.53 -902.77 -4.09 -20.12 16 15 C 0.04 0.74 5.53 86.41 0.48 1.22 16 16 C 0.11 1.87 7.23 86.44 0.62 2.49 16 17 N -0.45 -11.29 3.15 -508.69 -1.60 -12.89 16 18 C 0.00 -0.11 11.55 83.36 0.96 0.86 16 19 C -0.22 -5.88 10.87 22.24 0.24 -5.64 16 20 C -0.22 -6.97 10.81 22.03 0.24 -6.73 16 21 C 0.00 0.08 6.64 40.88 0.27 0.35 16 22 C 0.12 4.02 5.24 85.54 0.45 4.46 16 23 C 0.12 4.32 4.27 38.15 0.16 4.49 16 24 C -0.13 -3.83 8.61 22.39 0.19 -3.64 16 25 C -0.10 -2.09 10.04 22.25 0.22 -1.87 16 26 C -0.12 -2.17 10.04 22.29 0.22 -1.95 16 27 C -0.11 -2.33 10.04 22.25 0.22 -2.11 16 28 C -0.14 -4.36 9.79 22.39 0.22 -4.15 16 29 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 30 H 0.02 1.03 7.93 -2.39 -0.02 1.01 16 31 H 0.00 0.23 7.37 -2.39 -0.02 0.21 16 32 H 0.13 3.22 7.17 -2.38 -0.02 3.21 16 33 H 0.08 2.03 7.86 -2.39 -0.02 2.02 16 34 H 0.13 1.59 7.96 -2.39 -0.02 1.57 16 35 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.20 2.69 8.06 -2.91 -0.02 2.66 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 42 H 0.09 3.74 5.49 -2.39 -0.01 3.73 16 43 H 0.12 3.48 7.87 -2.91 -0.02 3.46 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 45 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 47 H 0.11 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -81.44 386.35 2.59 -78.85 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.96 Total: 22.47 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.64 Total: -2.84 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -6.99 Total: -116.54 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.04 Total: -29.66 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -81.44 2.59 -78.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932529931.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.295 kcal (2) G-P(sol) polarization free energy of solvation -81.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds