Wall clock time and date at job start Tue Mar 31 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34238 * 125.03908 * 2 1 4 4 C 1.46486 * 106.99864 * 180.02562 * 3 2 1 5 5 C 1.39627 * 134.02768 * 180.02562 * 4 3 2 6 6 C 1.36628 * 119.75861 * 179.26526 * 5 4 3 7 7 C 1.38842 * 120.53028 * 0.60723 * 6 5 4 8 8 C 1.37751 * 120.66228 * 359.62526 * 7 6 5 9 9 C 1.39125 * 119.77796 * 359.97438 * 8 7 6 10 10 N 1.36831 * 125.03293 * 180.02562 * 2 1 3 11 11 C 1.46500 * 125.06227 * 359.96789 * 10 2 1 12 12 C 1.50697 * 109.47319 * 90.02317 * 11 10 2 13 13 O 1.21281 * 119.99840 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00098 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00063 * 179.97438 * 14 12 11 16 16 H 1.08995 * 115.48858 * 350.38823 * 15 14 12 17 17 C 1.52997 * 117.44292 * 205.00607 * 15 14 12 18 18 H 1.08998 * 120.26145 * 3.82964 * 17 15 14 19 19 C 1.54387 * 118.12106 * 160.81302 * 17 15 14 20 20 N 1.48141 * 104.61828 * 87.19069 * 19 17 15 21 21 C 1.36940 * 127.84124 * 140.41747 * 20 19 17 22 22 H 1.07995 * 119.99402 * 338.92966 * 21 20 19 23 23 C 1.38807 * 120.00110 * 158.92346 * 21 20 19 24 24 N 1.31619 * 120.00447 * 335.61148 * 23 21 20 25 25 Si 1.86805 * 119.99680 * 155.61428 * 23 21 20 26 26 H 1.48495 * 109.47169 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46757 * 240.00038 * 25 23 21 28 28 H 1.48496 * 109.47225 * 120.00112 * 25 23 21 29 29 C 1.48142 * 104.32381 * 320.67252 * 20 19 17 30 30 C 1.52997 * 117.44111 * 135.76376 * 15 14 12 31 31 H 1.09004 * 119.53861 * 355.88988 * 30 15 14 32 32 H 1.09003 * 109.47246 * 269.96263 * 1 2 3 33 33 H 1.09001 * 109.46697 * 29.95807 * 1 2 3 34 34 H 1.08996 * 109.47410 * 149.96000 * 1 2 3 35 35 H 1.08006 * 126.49566 * 0.06725 * 3 2 1 36 36 H 1.07997 * 120.12268 * 359.97438 * 5 4 3 37 37 H 1.08005 * 119.73933 * 180.18747 * 6 5 4 38 38 H 1.07992 * 119.66787 * 179.60607 * 7 6 5 39 39 H 1.07992 * 120.10601 * 179.97438 * 8 7 6 40 40 H 1.09004 * 109.47208 * 330.02010 * 11 10 2 41 41 H 1.08999 * 109.47038 * 210.02715 * 11 10 2 42 42 H 0.97000 * 120.00000 * 0.02562 * 14 12 11 43 43 H 1.08999 * 110.40784 * 328.40464 * 19 17 15 44 44 H 1.09000 * 110.40684 * 205.97552 * 19 17 15 45 45 H 0.96996 * 119.99488 * 354.47572 * 24 23 21 46 46 H 1.09001 * 110.40815 * 158.11026 * 29 20 19 47 47 H 1.09002 * 110.41059 * 280.54539 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 3.6706 0.6454 -0.0006 5 6 4.9042 1.2995 -0.0005 6 6 6.0589 0.5693 0.0140 7 6 6.0159 -0.8185 0.0158 8 6 4.8097 -1.4839 0.0109 9 6 3.6214 -0.7604 0.0045 10 7 2.2925 -1.1204 -0.0005 11 6 1.7937 -2.4979 -0.0004 12 6 1.6226 -2.9703 -1.4212 13 8 1.8913 -2.2294 -2.3431 14 7 1.1719 -4.2163 -1.6674 15 6 1.0050 -4.6754 -3.0486 16 1 1.1078 -3.9063 -3.8141 17 6 -0.0093 -5.7923 -3.3028 18 1 -0.6213 -6.1748 -2.4860 19 6 -0.5349 -5.9844 -4.7416 20 7 0.4488 -6.8886 -5.3814 21 6 0.2022 -7.9213 -6.2462 22 1 -0.7764 -8.3768 -6.2781 23 6 1.2101 -8.3825 -7.0819 24 7 2.2063 -7.5882 -7.4120 25 14 1.1524 -10.1305 -7.7381 26 1 -0.0612 -10.8132 -7.2222 27 1 2.3618 -10.8671 -7.2911 28 1 1.1111 -10.1011 -9.2222 29 6 1.7594 -6.4263 -4.8683 30 6 1.5039 -6.0809 -3.3896 31 1 2.0217 -6.6665 -2.6299 32 1 -0.3634 -0.0007 1.0277 33 1 -0.3633 0.8904 -0.5132 34 1 -0.3634 -0.8896 -0.5144 35 1 1.9356 2.1235 0.0010 36 1 4.9455 2.3787 -0.0002 37 1 7.0129 1.0756 0.0172 38 1 6.9372 -1.3818 0.0209 39 1 4.7867 -2.5636 0.0120 40 1 0.8332 -2.5365 0.5135 41 1 2.5069 -3.1425 0.5134 42 1 0.9574 -4.8090 -0.9301 43 1 -0.5688 -5.0287 -5.2646 44 1 -1.5222 -6.4460 -4.7272 45 1 2.1960 -6.6578 -7.1379 46 1 2.5011 -7.2210 -4.9493 47 1 2.0893 -5.5406 -5.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960891196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:20 Heat of formation + Delta-G solvation = 89.045577 kcal Electronic energy + Delta-G solvation = -28358.276948 eV Core-core repulsion = 24508.370483 eV Total energy + Delta-G solvation = -3849.906465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.68264 -39.94223 -38.58339 -37.23332 -34.77996 -33.40560 -32.83254 -31.44333 -30.62187 -30.09098 -27.60400 -27.42673 -26.62698 -25.32175 -22.56097 -21.88586 -21.66845 -20.90228 -20.47846 -19.71647 -19.51354 -17.58531 -17.50323 -17.40180 -16.58844 -16.30655 -15.41759 -15.21693 -15.06595 -14.37680 -14.12513 -13.98433 -13.94242 -13.71517 -13.63300 -13.27610 -13.19780 -13.15021 -12.95666 -12.60037 -12.44404 -12.37230 -11.97843 -11.64307 -11.62013 -11.51086 -10.96842 -10.90605 -10.72531 -10.63474 -10.33712 -10.18674 -10.10821 -9.70799 -9.70343 -9.33120 -8.70257 -8.49517 -8.20460 -7.75665 -7.05133 -6.17975 -3.24582 1.01051 1.50894 2.26396 2.30632 2.57007 2.99971 3.47285 3.51063 3.63790 3.83486 4.03762 4.31381 4.33894 4.42448 4.51839 4.53882 4.61075 4.88959 4.90949 4.95122 5.05585 5.12742 5.19968 5.20591 5.30452 5.34381 5.37097 5.42446 5.58907 5.63837 5.69360 5.71355 5.84557 5.85303 5.95655 5.96719 6.28867 6.35416 6.50563 6.51200 6.53778 6.64637 6.66611 6.70422 6.90369 6.93195 7.03879 7.10258 7.30802 7.68903 7.99169 8.39572 8.91953 9.72863 10.34821 11.18007 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002213 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.330030 B =12648.188499 C =13576.939412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.091 3.909 3 C -0.204 4.204 4 C -0.103 4.103 5 C -0.074 4.074 6 C -0.148 4.148 7 C -0.102 4.102 8 C -0.126 4.126 9 C 0.108 3.892 10 N -0.465 5.465 11 C 0.091 3.909 12 C 0.492 3.508 13 O -0.513 6.513 14 N -0.695 5.695 15 C 0.101 3.899 16 H 0.132 0.868 17 C -0.178 4.178 18 H 0.107 0.893 19 C 0.155 3.845 20 N -0.596 5.596 21 C -0.333 4.333 22 H 0.066 0.934 23 C -0.025 4.025 24 N -0.917 5.917 25 Si 1.075 2.925 26 H -0.292 1.292 27 H -0.289 1.289 28 H -0.292 1.292 29 C 0.165 3.835 30 C -0.177 4.177 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.400 0.600 43 H 0.026 0.974 44 H 0.055 0.945 45 H 0.270 0.730 46 H 0.068 0.932 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 14.630 22.037 26.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.015 4.015 3 C -0.229 4.229 4 C -0.108 4.108 5 C -0.092 4.092 6 C -0.167 4.167 7 C -0.121 4.121 8 C -0.146 4.146 9 C 0.003 3.997 10 N -0.149 5.149 11 C -0.035 4.035 12 C 0.276 3.724 13 O -0.387 6.387 14 N -0.345 5.345 15 C -0.005 4.005 16 H 0.149 0.851 17 C -0.199 4.199 18 H 0.125 0.875 19 C 0.028 3.972 20 N -0.320 5.320 21 C -0.460 4.460 22 H 0.084 0.916 23 C -0.227 4.227 24 N -0.557 5.557 25 Si 0.905 3.095 26 H -0.218 1.218 27 H -0.216 1.216 28 H -0.220 1.220 29 C 0.039 3.961 30 C -0.199 4.199 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.234 0.766 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.965 13.624 20.340 24.501 hybrid contribution -0.984 0.577 1.300 1.729 sum -0.018 14.201 21.640 25.883 Atomic orbital electron populations 1.20487 0.87896 1.04026 1.02783 1.20276 0.93427 0.85174 1.02640 1.21387 0.90350 0.97469 1.13682 1.19154 0.93684 0.91865 1.06056 1.20239 0.90476 0.99355 0.99159 1.20610 0.97926 0.93950 1.04223 1.20778 0.96591 0.94472 1.00235 1.20012 0.89883 0.98919 1.05809 1.18155 0.83922 0.94048 1.03590 1.43243 1.04027 1.04049 1.63562 1.21535 1.03369 0.83144 0.95478 1.20898 0.77859 0.82068 0.91554 1.90801 1.48169 1.54231 1.45509 1.45324 1.66719 1.14306 1.08201 1.21827 1.02942 0.92194 0.83518 0.85060 1.24340 0.93153 1.01734 1.00661 0.87527 1.21122 0.93930 0.93756 0.88375 1.45270 1.00346 1.34835 1.51569 1.19779 1.01000 1.09147 1.16112 0.91622 1.25907 0.95522 1.05968 0.95349 1.70703 1.35165 1.06841 1.42993 0.83387 0.75370 0.74861 0.75928 1.21786 1.21592 1.21955 1.21033 0.90284 0.97771 0.87005 1.24407 0.97572 0.96863 1.01037 0.87642 0.90458 0.89532 0.91491 0.83641 0.86191 0.86169 0.85849 0.86666 0.86395 0.86552 0.76623 0.95631 0.92679 0.91897 0.91320 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.78 36.01 0.35 -0.37 16 2 C 0.09 1.00 6.83 -81.77 -0.56 0.44 16 3 C -0.20 -2.35 10.95 -37.67 -0.41 -2.76 16 4 C -0.10 -1.33 6.37 -105.14 -0.67 -2.00 16 5 C -0.07 -0.82 10.05 -39.64 -0.40 -1.22 16 6 C -0.15 -1.53 9.97 -39.94 -0.40 -1.93 16 7 C -0.10 -1.09 10.01 -39.54 -0.40 -1.48 16 8 C -0.13 -1.50 9.96 -39.43 -0.39 -1.89 16 9 C 0.11 1.41 6.81 -83.99 -0.57 0.84 16 10 N -0.46 -5.41 2.27 -111.14 -0.25 -5.66 16 11 C 0.09 0.80 6.04 -5.20 -0.03 0.77 16 12 C 0.49 6.27 7.90 -10.99 -0.09 6.18 16 13 O -0.51 -9.24 16.00 5.56 0.09 -9.15 16 14 N -0.70 -8.11 5.56 -53.81 -0.30 -8.41 16 15 C 0.10 1.60 5.98 -67.93 -0.41 1.19 16 16 H 0.13 2.45 7.40 -51.93 -0.38 2.06 16 17 C -0.18 -2.96 7.06 -89.22 -0.63 -3.59 16 18 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 19 C 0.15 3.22 7.04 -2.41 -0.02 3.20 16 20 N -0.60 -15.15 3.23 -169.12 -0.55 -15.69 16 21 C -0.33 -9.38 10.19 -15.06 -0.15 -9.54 16 22 H 0.07 1.84 7.94 -52.49 -0.42 1.42 16 23 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 24 N -0.92 -27.92 12.82 55.49 0.71 -27.20 16 25 Si 1.08 25.33 29.98 -169.99 -5.10 20.24 16 26 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.17 3.86 4.98 -2.63 -0.01 3.85 16 30 C -0.18 -3.19 7.04 -89.43 -0.63 -3.81 16 31 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.54 7.57 -51.93 -0.39 0.14 16 35 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.65 7.50 -51.93 -0.39 0.26 16 41 H 0.12 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.40 3.23 8.83 -40.82 -0.36 2.87 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.27 8.28 6.41 -40.82 -0.26 8.02 16 46 H 0.07 1.76 7.47 -51.93 -0.39 1.37 16 47 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -36.35 391.28 -11.86 -48.21 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -6.86 Total: 4.72 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -5.50 Total: -12.94 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.39 Total: -56.97 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.10 Total: 20.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.35 -11.86 -48.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960891196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.255 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds