Wall clock time and date at job start Tue Mar 31 2020 23:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34238 * 125.03908 * 2 1 4 4 C 1.46486 * 106.99864 * 180.02562 * 3 2 1 5 5 C 1.39627 * 134.02768 * 180.02562 * 4 3 2 6 6 C 1.36628 * 119.75861 * 179.26526 * 5 4 3 7 7 C 1.38842 * 120.53028 * 0.60723 * 6 5 4 8 8 C 1.37751 * 120.66228 * 359.62526 * 7 6 5 9 9 C 1.39125 * 119.77796 * 359.97438 * 8 7 6 10 10 N 1.36831 * 125.03293 * 180.02562 * 2 1 3 11 11 C 1.46500 * 125.06227 * 359.96789 * 10 2 1 12 12 C 1.50697 * 109.47319 * 90.02317 * 11 10 2 13 13 O 1.21281 * 119.99840 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00098 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00063 * 179.97438 * 14 12 11 16 16 H 1.08995 * 115.48858 * 350.38823 * 15 14 12 17 17 C 1.52997 * 117.44292 * 205.00607 * 15 14 12 18 18 H 1.08998 * 120.26145 * 3.82964 * 17 15 14 19 19 C 1.54387 * 118.12106 * 160.81302 * 17 15 14 20 20 N 1.48141 * 104.61828 * 87.19069 * 19 17 15 21 21 C 1.36940 * 127.84124 * 140.41747 * 20 19 17 22 22 H 1.07995 * 119.99402 * 338.92966 * 21 20 19 23 23 C 1.38807 * 120.00110 * 158.92346 * 21 20 19 24 24 N 1.31619 * 120.00447 * 335.61148 * 23 21 20 25 25 Si 1.86805 * 119.99680 * 155.61428 * 23 21 20 26 26 H 1.48495 * 109.47169 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.46757 * 240.00038 * 25 23 21 28 28 H 1.48496 * 109.47225 * 120.00112 * 25 23 21 29 29 C 1.48142 * 104.32381 * 320.67252 * 20 19 17 30 30 C 1.52997 * 117.44111 * 135.76376 * 15 14 12 31 31 H 1.09004 * 119.53861 * 355.88988 * 30 15 14 32 32 H 1.09003 * 109.47246 * 269.96263 * 1 2 3 33 33 H 1.09001 * 109.46697 * 29.95807 * 1 2 3 34 34 H 1.08996 * 109.47410 * 149.96000 * 1 2 3 35 35 H 1.08006 * 126.49566 * 0.06725 * 3 2 1 36 36 H 1.07997 * 120.12268 * 359.97438 * 5 4 3 37 37 H 1.08005 * 119.73933 * 180.18747 * 6 5 4 38 38 H 1.07992 * 119.66787 * 179.60607 * 7 6 5 39 39 H 1.07992 * 120.10601 * 179.97438 * 8 7 6 40 40 H 1.09004 * 109.47208 * 330.02010 * 11 10 2 41 41 H 1.08999 * 109.47038 * 210.02715 * 11 10 2 42 42 H 0.97000 * 120.00000 * 0.02562 * 14 12 11 43 43 H 1.08999 * 110.40784 * 328.40464 * 19 17 15 44 44 H 1.09000 * 110.40684 * 205.97552 * 19 17 15 45 45 H 0.96996 * 119.99488 * 354.47572 * 24 23 21 46 46 H 1.09001 * 110.40815 * 158.11026 * 29 20 19 47 47 H 1.09002 * 110.41059 * 280.54539 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2777 1.0991 0.0000 4 6 3.6706 0.6454 -0.0006 5 6 4.9042 1.2995 -0.0005 6 6 6.0589 0.5693 0.0140 7 6 6.0159 -0.8185 0.0158 8 6 4.8097 -1.4839 0.0109 9 6 3.6214 -0.7604 0.0045 10 7 2.2925 -1.1204 -0.0005 11 6 1.7937 -2.4979 -0.0004 12 6 1.6226 -2.9703 -1.4212 13 8 1.8913 -2.2294 -2.3431 14 7 1.1719 -4.2163 -1.6674 15 6 1.0050 -4.6754 -3.0486 16 1 1.1078 -3.9063 -3.8141 17 6 -0.0093 -5.7923 -3.3028 18 1 -0.6213 -6.1748 -2.4860 19 6 -0.5349 -5.9844 -4.7416 20 7 0.4488 -6.8886 -5.3814 21 6 0.2022 -7.9213 -6.2462 22 1 -0.7764 -8.3768 -6.2781 23 6 1.2101 -8.3825 -7.0819 24 7 2.2063 -7.5882 -7.4120 25 14 1.1524 -10.1305 -7.7381 26 1 -0.0612 -10.8132 -7.2222 27 1 2.3618 -10.8671 -7.2911 28 1 1.1111 -10.1011 -9.2222 29 6 1.7594 -6.4263 -4.8683 30 6 1.5039 -6.0809 -3.3896 31 1 2.0217 -6.6665 -2.6299 32 1 -0.3634 -0.0007 1.0277 33 1 -0.3633 0.8904 -0.5132 34 1 -0.3634 -0.8896 -0.5144 35 1 1.9356 2.1235 0.0010 36 1 4.9455 2.3787 -0.0002 37 1 7.0129 1.0756 0.0172 38 1 6.9372 -1.3818 0.0209 39 1 4.7867 -2.5636 0.0120 40 1 0.8332 -2.5365 0.5135 41 1 2.5069 -3.1425 0.5134 42 1 0.9574 -4.8090 -0.9301 43 1 -0.5688 -5.0287 -5.2646 44 1 -1.5222 -6.4460 -4.7272 45 1 2.1960 -6.6578 -7.1379 46 1 2.5011 -7.2210 -4.9493 47 1 2.0893 -5.5406 -5.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960891196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:20 Heat of formation + Delta-G solvation = 67.015873 kcal Electronic energy + Delta-G solvation = -28359.232228 eV Core-core repulsion = 24508.370483 eV Total energy + Delta-G solvation = -3850.861745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49047 -41.19697 -39.95485 -38.04432 -36.38049 -34.65382 -34.00944 -32.31552 -31.96858 -31.18805 -29.25407 -28.43245 -27.53699 -27.04011 -23.92074 -22.94447 -22.47724 -22.09740 -21.94335 -21.06731 -20.56222 -19.56234 -18.56468 -18.32904 -17.49386 -17.35276 -16.38617 -16.20162 -16.00979 -15.97185 -15.72620 -15.40845 -15.06816 -15.01549 -14.82802 -14.65352 -14.01759 -13.92225 -13.79359 -13.76923 -13.58116 -13.39931 -13.22486 -13.02426 -12.66427 -12.60255 -12.38550 -12.37022 -12.31292 -11.92380 -11.86614 -11.75837 -11.69002 -11.26500 -10.91685 -10.66622 -10.54485 -9.90390 -9.14841 -9.03153 -8.56361 -8.42398 -5.45519 0.19268 0.66318 1.30568 1.41136 1.56044 1.65071 1.79950 1.80829 2.03347 2.59132 2.66553 2.99080 3.13897 3.39244 3.49146 3.62190 3.67959 3.70263 3.74230 3.81620 3.95477 4.04367 4.13067 4.23070 4.24270 4.25941 4.42215 4.52677 4.57299 4.64638 4.65382 4.66798 4.73691 4.81611 4.93445 4.96181 5.02835 5.07947 5.11097 5.15992 5.17650 5.35309 5.54945 5.58866 5.69292 5.84195 5.91068 6.20678 6.23174 6.28504 6.43728 6.74900 7.05439 7.59234 8.25889 8.93321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.002213 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.330030 B =12648.188499 C =13576.939412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.084 3.916 3 C -0.228 4.228 4 C -0.132 4.132 5 C -0.088 4.088 6 C -0.153 4.153 7 C -0.110 4.110 8 C -0.143 4.143 9 C 0.081 3.919 10 N -0.471 5.471 11 C 0.095 3.905 12 C 0.494 3.506 13 O -0.572 6.572 14 N -0.675 5.675 15 C 0.123 3.877 16 H 0.099 0.901 17 C -0.151 4.151 18 H 0.149 0.851 19 C 0.145 3.855 20 N -0.621 5.621 21 C -0.339 4.339 22 H 0.067 0.933 23 C -0.083 4.083 24 N -0.949 5.949 25 Si 1.128 2.872 26 H -0.267 1.267 27 H -0.287 1.287 28 H -0.290 1.290 29 C 0.169 3.831 30 C -0.182 4.182 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.160 0.840 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.424 0.576 43 H 0.014 0.986 44 H 0.065 0.935 45 H 0.252 0.748 46 H 0.036 0.964 47 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 13.902 25.052 28.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C -0.252 4.252 4 C -0.137 4.137 5 C -0.106 4.106 6 C -0.172 4.172 7 C -0.129 4.129 8 C -0.164 4.164 9 C -0.024 4.024 10 N -0.155 5.155 11 C -0.030 4.030 12 C 0.281 3.719 13 O -0.450 6.450 14 N -0.327 5.327 15 C 0.015 3.985 16 H 0.117 0.883 17 C -0.172 4.172 18 H 0.167 0.833 19 C 0.020 3.980 20 N -0.347 5.347 21 C -0.467 4.467 22 H 0.085 0.915 23 C -0.278 4.278 24 N -0.591 5.591 25 Si 0.951 3.049 26 H -0.192 1.192 27 H -0.213 1.213 28 H -0.217 1.217 29 C 0.043 3.957 30 C -0.203 4.203 31 H 0.150 0.850 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.178 0.822 36 H 0.154 0.846 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.143 0.857 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.263 0.737 43 H 0.032 0.968 44 H 0.084 0.916 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -0.338 12.895 23.432 26.748 hybrid contribution -0.604 0.930 0.335 1.159 sum -0.942 13.826 23.767 27.512 Atomic orbital electron populations 1.20585 0.85519 1.04194 1.04521 1.20856 0.94955 0.84995 1.01423 1.21714 0.90153 0.98654 1.14674 1.19609 0.94833 0.92507 1.06734 1.20563 0.90430 1.00453 0.99174 1.20960 0.98775 0.94092 1.03344 1.21141 0.97175 0.94993 0.99583 1.20284 0.90134 0.99617 1.06352 1.18494 0.84958 0.94549 1.04432 1.43453 1.03638 1.05148 1.63280 1.21819 1.06307 0.82250 0.92649 1.21678 0.76112 0.81388 0.92756 1.90795 1.50625 1.55852 1.47701 1.45055 1.66145 1.14583 1.06878 1.21279 1.01506 0.90358 0.85324 0.88315 1.24213 0.92253 1.01588 0.99107 0.83308 1.21287 0.93763 0.92426 0.90565 1.45571 1.02030 1.35294 1.51762 1.20102 1.01017 1.09476 1.16074 0.91537 1.27430 0.95259 1.09182 0.95910 1.70840 1.36741 1.06269 1.45269 0.82705 0.76356 0.70408 0.75414 1.19157 1.21291 1.21739 1.20810 0.88974 0.95361 0.90564 1.24141 0.99161 0.99222 0.97770 0.85044 0.87783 0.89004 0.91654 0.82220 0.84567 0.83786 0.83766 0.85670 0.82200 0.83711 0.73746 0.96819 0.91639 0.93815 0.94569 0.98342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.78 71.24 0.70 -0.47 16 2 C 0.08 1.73 6.83 40.87 0.28 2.01 16 3 C -0.23 -5.16 10.95 23.51 0.26 -4.90 16 4 C -0.13 -3.41 6.37 -20.20 -0.13 -3.54 16 5 C -0.09 -1.94 10.05 22.23 0.22 -1.72 16 6 C -0.15 -3.04 9.97 22.04 0.22 -2.82 16 7 C -0.11 -2.27 10.01 22.30 0.22 -2.04 16 8 C -0.14 -3.34 9.96 22.37 0.22 -3.12 16 9 C 0.08 2.07 6.81 39.03 0.27 2.34 16 10 N -0.47 -10.24 2.27 -505.52 -1.15 -11.38 16 11 C 0.09 1.36 6.04 85.63 0.52 1.88 16 12 C 0.49 11.56 7.90 87.66 0.69 12.25 16 13 O -0.57 -20.58 16.00 -3.03 -0.05 -20.63 16 14 N -0.67 -13.62 5.56 -442.54 -2.46 -16.08 16 15 C 0.12 3.72 5.98 44.99 0.27 3.99 16 16 H 0.10 3.77 7.40 -2.39 -0.02 3.75 16 17 C -0.15 -4.65 7.06 -9.89 -0.07 -4.72 16 18 H 0.15 3.44 8.14 -2.39 -0.02 3.42 16 19 C 0.14 5.97 7.04 86.53 0.61 6.58 16 20 N -0.62 -32.24 3.23 -688.97 -2.22 -34.46 16 21 C -0.34 -19.37 10.19 84.03 0.86 -18.51 16 22 H 0.07 3.71 7.94 -2.91 -0.02 3.69 16 23 C -0.08 -4.82 5.12 84.86 0.43 -4.38 16 24 N -0.95 -60.14 12.82 21.65 0.28 -59.86 16 25 Si 1.13 51.42 29.98 68.60 2.06 53.48 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 C 0.17 8.23 4.98 86.40 0.43 8.66 16 30 C -0.18 -6.33 7.04 -10.03 -0.07 -6.40 16 31 H 0.13 3.93 8.14 -2.38 -0.02 3.91 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 0.87 7.57 -2.39 -0.02 0.85 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 39 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 0.96 7.50 -2.39 -0.02 0.94 16 41 H 0.15 1.29 8.10 -2.39 -0.02 1.27 16 42 H 0.42 4.72 8.83 -92.71 -0.82 3.91 16 43 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.25 16.43 6.41 -92.71 -0.59 15.83 16 46 H 0.04 1.95 7.47 -2.39 -0.02 1.93 16 47 H 0.00 -0.06 7.67 -2.39 -0.02 -0.08 16 Total: -1.00 -85.18 391.28 2.73 -82.45 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.34 Total: 21.43 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 5.93 Total: -14.93 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -5.55 Total: -121.79 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.05 Total: -20.63 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.06 Total: 53.48 kcal Total: -85.18 2.73 -82.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960891196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.466 kcal (2) G-P(sol) polarization free energy of solvation -85.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds