Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99569 * 2 1 4 4 H 1.48489 * 109.47274 * 269.99599 * 3 2 1 5 5 H 1.48505 * 109.47038 * 29.99938 * 3 2 1 6 6 H 1.48505 * 109.46761 * 149.99718 * 3 2 1 7 7 C 1.38806 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00088 * 169.81437 * 7 2 1 9 9 N 1.36937 * 120.00286 * 349.82106 * 7 2 1 10 10 C 1.48145 * 127.84449 * 167.19815 * 9 7 2 11 11 C 1.54386 * 104.62091 * 140.41266 * 10 9 7 12 12 H 1.08994 * 118.18097 * 244.20570 * 11 10 9 13 13 C 1.54145 * 104.96629 * 23.83168 * 11 10 9 14 14 H 1.08998 * 121.79171 * 222.20125 * 13 11 10 15 15 C 1.51697 * 127.61143 * 347.47176 * 9 7 2 16 16 C 1.52999 * 118.12173 * 87.19560 * 11 10 9 17 17 H 1.08999 * 117.44071 * 16.05910 * 16 11 10 18 18 N 1.46492 * 117.44385 * 160.81031 * 16 11 10 19 19 C 1.34773 * 120.00117 * 223.99847 * 18 16 11 20 20 O 1.21595 * 119.99805 * 0.02562 * 19 18 16 21 21 C 1.47527 * 120.00330 * 179.97438 * 19 18 16 22 22 C 1.39784 * 120.07047 * 179.97438 * 21 19 18 23 23 C 1.37614 * 119.93108 * 179.97438 * 22 21 19 24 24 C 1.39213 * 120.06955 * 0.02562 * 23 22 21 25 25 N 1.39040 * 119.93438 * 179.97438 * 24 23 22 26 26 C 1.48228 * 111.00445 * 121.12446 * 25 24 23 27 27 C 1.51117 * 105.36296 * 144.90017 * 26 25 24 28 28 C 1.30962 * 109.45885 * 343.02437 * 27 26 25 29 29 C 1.48226 * 111.00443 * 234.76513 * 25 24 23 30 30 C 1.39221 * 120.13557 * 0.26728 * 24 23 22 31 31 C 1.37606 * 120.06893 * 359.45599 * 30 24 23 32 32 H 0.96999 * 120.00541 * 0.02562 * 1 2 3 33 33 H 1.09006 * 110.40442 * 21.62918 * 10 9 7 34 34 H 1.08996 * 110.40730 * 259.20663 * 10 9 7 35 35 H 1.09000 * 111.96132 * 100.90116 * 15 9 7 36 36 H 1.09007 * 110.49095 * 337.33296 * 15 9 7 37 37 H 0.97001 * 119.99967 * 43.99987 * 18 16 11 38 38 H 1.08000 * 120.03449 * 359.96182 * 22 21 19 39 39 H 1.08003 * 119.96732 * 180.02562 * 23 22 21 40 40 H 1.08997 * 110.27006 * 263.87741 * 26 25 24 41 41 H 1.09006 * 110.26317 * 25.92958 * 26 25 24 42 42 H 1.08005 * 125.26685 * 163.00772 * 27 26 25 43 43 H 1.07997 * 125.27389 * 179.97438 * 28 27 26 44 44 H 1.09003 * 110.26234 * 334.06937 * 29 25 24 45 45 H 1.08994 * 110.26992 * 96.03238 * 29 25 24 46 46 H 1.07999 * 119.96418 * 179.70476 * 30 24 23 47 47 H 1.08002 * 120.03465 * 180.25262 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0776 -1.2095 -0.1649 9 7 1.3419 -2.3786 0.2106 10 6 1.8388 -3.7574 -0.0056 11 6 1.2812 -4.5641 1.1868 12 1 1.9904 -4.9937 1.8942 13 6 0.0425 -3.7759 1.6562 14 1 -0.1712 -3.6183 2.7134 15 6 -0.0781 -2.5598 0.7126 16 6 -0.1158 -5.1738 1.0548 17 1 -0.5403 -5.2447 0.0533 18 7 -0.4649 -6.2656 1.9670 19 6 -1.1000 -7.3581 1.4985 20 8 -1.3827 -7.4378 0.3186 21 6 -1.4511 -8.4579 2.4170 22 6 -2.1102 -9.5915 1.9327 23 6 -2.4359 -10.6159 2.7919 24 6 -2.1101 -10.5239 4.1422 25 7 -2.4409 -11.5604 5.0080 26 6 -1.2316 -12.1096 5.6659 27 6 -1.6722 -12.4896 7.0606 28 6 -2.8072 -11.8971 7.3362 29 6 -3.2390 -11.0618 6.1532 30 6 -1.4590 -9.3936 4.6287 31 6 -1.1256 -8.3684 3.7736 32 1 -0.4851 0.8400 -0.0004 33 1 2.9287 -3.7739 0.0008 34 1 1.4574 -4.1558 -0.9457 35 1 -0.7729 -2.7758 -0.0989 36 1 -0.4021 -1.6790 1.2672 37 1 -0.2390 -6.2022 2.9082 38 1 -2.3638 -9.6631 0.8853 39 1 -2.9448 -11.4922 2.4183 40 1 -0.8763 -12.9893 5.1294 41 1 -0.4490 -11.3521 5.7104 42 1 -1.1344 -13.1480 7.7268 43 1 -3.3505 -11.9913 8.2647 44 1 -3.0218 -10.0092 6.3349 45 1 -4.3029 -11.1993 5.9604 46 1 -1.2118 -9.3230 5.6777 47 1 -0.6169 -7.4935 4.1508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961768406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = 86.039613 kcal Electronic energy + Delta-G solvation = -27628.177008 eV Core-core repulsion = 23778.140194 eV Total energy + Delta-G solvation = -3850.036814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80951 -41.07416 -39.90289 -38.53274 -36.06190 -34.56471 -33.81732 -32.32906 -31.82805 -29.89596 -29.40039 -28.91395 -27.58362 -25.26210 -23.83690 -23.63532 -22.44825 -22.00642 -21.23111 -20.82116 -20.31883 -19.17148 -18.83027 -18.09681 -17.81574 -16.91492 -16.64660 -16.12653 -16.03872 -15.74323 -15.63501 -15.31866 -14.93587 -14.75390 -14.63960 -14.46324 -14.19018 -13.95030 -13.73637 -13.37743 -13.28119 -13.26649 -13.13061 -12.92206 -12.90784 -12.71394 -12.33765 -12.23922 -12.15716 -12.05102 -11.85417 -11.64728 -11.21254 -10.85396 -10.73243 -10.64067 -10.09629 -9.94480 -9.64032 -9.38941 -8.95352 -7.90291 -5.25124 -0.37654 0.30103 1.23721 1.47290 1.48653 1.58307 1.63911 1.86542 2.48970 2.63792 2.77229 2.89749 3.29170 3.48517 3.58702 3.67627 3.75938 3.81262 3.84787 3.90600 3.91144 4.11400 4.20353 4.29082 4.35929 4.47202 4.49490 4.51490 4.53821 4.54116 4.69431 4.76768 4.87361 4.91704 4.97864 4.98698 5.06629 5.23095 5.25946 5.31219 5.38365 5.39862 5.43599 5.45018 5.49664 5.62257 5.65034 5.89177 6.12185 6.23203 6.42949 6.95697 7.09582 7.65536 8.44433 9.23806 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026828 B = 0.001784 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.439340 B =15693.266512 C =16122.009569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.151 3.849 11 C -0.164 4.164 12 H 0.137 0.863 13 C -0.174 4.174 14 H 0.128 0.872 15 C 0.184 3.816 16 C 0.114 3.886 17 H 0.106 0.894 18 N -0.677 5.677 19 C 0.559 3.441 20 O -0.579 6.579 21 C -0.148 4.148 22 C -0.058 4.058 23 C -0.103 4.103 24 C 0.104 3.896 25 N -0.486 5.486 26 C 0.049 3.951 27 C -0.170 4.170 28 C -0.170 4.170 29 C 0.047 3.953 30 C -0.155 4.155 31 C -0.065 4.065 32 H 0.249 0.751 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.004 0.996 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.148 0.852 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -26.872 18.565 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.348 5.348 10 C 0.025 3.975 11 C -0.185 4.185 12 H 0.155 0.845 13 C -0.195 4.195 14 H 0.145 0.855 15 C 0.060 3.940 16 C 0.006 3.994 17 H 0.124 0.876 18 N -0.327 5.327 19 C 0.348 3.652 20 O -0.460 6.460 21 C -0.152 4.152 22 C -0.078 4.078 23 C -0.122 4.122 24 C 0.009 3.991 25 N -0.207 5.207 26 C -0.076 4.076 27 C -0.188 4.188 28 C -0.188 4.188 29 C -0.078 4.078 30 C -0.175 4.175 31 C -0.084 4.084 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.022 0.978 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.175 0.825 43 H 0.174 0.826 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.165 0.835 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.509 -27.075 17.381 32.488 hybrid contribution 0.631 1.825 0.267 1.949 sum -3.878 -25.250 17.648 31.049 Atomic orbital electron populations 1.70080 1.06503 1.25681 1.57526 1.25694 0.96506 1.01211 1.02493 0.85053 0.77748 0.78876 0.77449 1.21399 1.21903 1.19219 1.19418 0.91627 0.83699 1.41850 0.89897 1.46376 1.11675 1.00623 1.76111 1.21197 0.97805 0.84477 0.94007 1.24273 0.90790 1.01663 1.01749 0.84522 1.24269 1.03533 0.90858 1.00873 0.85453 1.21479 0.85358 0.94087 0.93096 1.21430 0.97968 0.85301 0.94651 0.87586 1.45070 1.58502 1.16799 1.12320 1.18631 0.76667 0.82293 0.87564 1.90777 1.55659 1.80728 1.18848 1.19852 1.05496 0.95529 0.94276 1.21269 0.94290 0.91540 1.00687 1.21058 1.00273 0.99175 0.91676 1.19336 0.95695 0.90728 0.93370 1.63118 1.16144 1.27139 1.14305 1.22311 0.91512 1.00643 0.93142 1.23745 0.97801 1.00715 0.96515 1.23737 0.97824 0.98011 0.99237 1.22334 0.99626 0.98244 0.87623 1.21735 1.00533 0.94124 1.01086 1.21367 0.96810 0.99278 0.90979 0.94142 0.91743 0.96532 0.97798 0.91596 0.74521 0.84978 0.83514 0.89026 0.91339 0.82512 0.82554 0.91229 0.89125 0.83470 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.76 21.65 0.23 -57.06 16 2 C -0.07 -3.75 5.41 84.86 0.46 -3.29 16 3 Si 0.98 45.53 29.57 68.60 2.03 47.55 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.35 10.37 84.03 0.87 -12.47 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 9 N -0.62 -32.43 3.45 -678.53 -2.34 -34.77 16 10 C 0.15 6.35 7.05 86.53 0.61 6.96 16 11 C -0.16 -5.52 7.05 -9.94 -0.07 -5.59 16 12 H 0.14 3.76 8.14 -2.39 -0.02 3.74 16 13 C -0.17 -6.36 6.96 -9.93 -0.07 -6.43 16 14 H 0.13 4.01 8.14 -2.39 -0.02 3.99 16 15 C 0.18 9.11 5.96 85.82 0.51 9.62 16 16 C 0.11 3.76 5.97 44.99 0.27 4.03 16 17 H 0.11 4.20 7.40 -2.39 -0.02 4.18 16 18 N -0.68 -17.25 5.51 -445.72 -2.46 -19.70 16 19 C 0.56 15.96 7.76 86.69 0.67 16.63 16 20 O -0.58 -21.75 15.90 -4.02 -0.06 -21.81 16 21 C -0.15 -3.21 5.88 -20.08 -0.12 -3.33 16 22 C -0.06 -1.22 9.58 22.50 0.22 -1.00 16 23 C -0.10 -1.77 9.95 22.36 0.22 -1.54 16 24 C 0.10 1.59 4.91 38.47 0.19 1.78 16 25 N -0.49 -6.71 5.56 -695.46 -3.87 -10.58 16 26 C 0.05 0.54 6.45 85.43 0.55 1.09 16 27 C -0.17 -1.37 10.95 25.82 0.28 -1.09 16 28 C -0.17 -1.39 10.95 25.82 0.28 -1.11 16 29 C 0.05 0.52 6.43 85.43 0.55 1.07 16 30 C -0.16 -2.07 7.64 22.36 0.17 -1.90 16 31 C -0.07 -0.99 9.53 22.50 0.21 -0.78 16 32 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.07 3.63 6.45 -2.38 -0.02 3.62 16 37 H 0.42 7.46 6.84 -92.71 -0.63 6.82 16 38 H 0.13 2.95 7.64 -2.91 -0.02 2.93 16 39 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 0.71 6.67 -2.38 -0.02 0.69 16 42 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 43 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.07 0.72 6.34 -2.39 -0.02 0.71 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.15 1.38 7.01 -2.91 -0.02 1.36 16 47 H 0.15 1.52 6.39 -2.91 -0.02 1.50 16 Total: -1.00 -73.26 382.93 -0.29 -73.56 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.36 Total: 20.16 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.81 Total: 2.66 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -8.43 Total: -122.11 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.26 -0.29 -73.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961768406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.596 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds