Wall clock time and date at job start Tue Mar 31 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99570 * 2 1 4 4 H 1.48495 * 109.47257 * 269.99344 * 3 2 1 5 5 H 1.48494 * 109.47489 * 29.99691 * 3 2 1 6 6 H 1.48508 * 109.46701 * 149.99581 * 3 2 1 7 7 C 1.38808 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00335 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99496 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99899 * 180.02562 * 9 7 2 11 11 C 1.53952 * 113.58144 * 204.99720 * 10 9 7 12 12 C 1.52903 * 86.78411 * 220.66440 * 11 10 9 13 13 C 1.52909 * 88.04294 * 24.89786 * 12 11 10 14 14 C 1.52913 * 121.13702 * 150.61557 * 12 11 10 15 15 C 1.53955 * 86.77943 * 100.82266 * 14 12 11 16 16 N 1.46502 * 113.57847 * 139.33970 * 15 14 12 17 17 C 1.34771 * 120.00222 * 154.99765 * 16 15 14 18 18 O 1.21784 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.46210 * 120.00628 * 179.97438 * 17 16 15 20 20 C 1.41745 * 126.79277 * 0.02562 * 19 17 16 21 21 C 1.34523 * 107.77460 * 179.73501 * 20 19 17 22 22 N 1.36952 * 109.60137 * 0.02562 * 21 20 19 23 23 C 1.36705 * 131.34682 * 180.02562 * 22 21 20 24 24 C 1.34998 * 120.75318 * 180.02562 * 23 22 21 25 25 C 1.40301 * 120.38313 * 359.97388 * 24 23 22 26 26 C 1.36344 * 119.45794 * 0.02562 * 25 24 23 27 27 C 1.36943 * 108.74353 * 359.97438 * 22 21 20 28 28 C 1.52916 * 121.13671 * 259.17762 * 12 11 10 29 29 H 0.97004 * 120.00180 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00089 * 359.97438 * 9 7 2 31 31 H 1.09001 * 112.87754 * 336.13476 * 10 9 7 32 32 H 1.09003 * 113.66735 * 106.18922 * 11 10 9 33 33 H 1.09010 * 113.74460 * 335.14571 * 11 10 9 34 34 H 1.09000 * 113.66211 * 89.57520 * 13 12 11 35 35 H 1.09002 * 113.65964 * 220.63031 * 13 12 11 36 36 H 1.08995 * 113.66413 * 346.34773 * 14 12 11 37 37 H 1.09002 * 113.66043 * 215.28869 * 14 12 11 38 38 H 1.08997 * 113.57581 * 270.04885 * 15 14 12 39 39 H 0.97006 * 120.00257 * 334.98892 * 16 15 14 40 40 H 1.08003 * 126.11029 * 359.75907 * 20 19 17 41 41 H 1.07996 * 125.19874 * 179.97438 * 21 20 19 42 42 H 1.07996 * 119.61984 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.81003 * 179.97438 * 24 23 22 44 44 H 1.08005 * 120.27417 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.34054 * 180.02562 * 26 25 24 46 46 H 1.09000 * 113.66462 * 144.70339 * 28 12 11 47 47 H 1.08999 * 113.66005 * 13.64734 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 6 5.5273 -2.3649 0.5979 12 6 5.9800 -3.2894 -0.5327 13 6 4.7835 -2.7943 -1.3460 14 6 7.4011 -3.2166 -1.0926 15 6 7.7110 -4.4538 -0.2304 16 7 8.5542 -5.4429 -0.9065 17 6 9.3118 -6.2902 -0.1823 18 8 9.2959 -6.2334 1.0341 19 6 10.1529 -7.2777 -0.8569 20 6 10.2819 -7.4694 -2.2554 21 6 11.1567 -8.4719 -2.4536 22 7 11.6008 -8.9397 -1.2454 23 6 12.4840 -9.9348 -0.9316 24 6 12.7711 -10.2223 0.3558 25 6 12.1658 -9.5012 1.3959 26 6 11.2830 -8.5060 1.0967 27 6 10.9984 -8.2214 -0.2471 28 6 6.2081 -4.7818 -0.2903 29 1 -0.4850 0.8401 -0.0004 30 1 3.8645 -0.3620 0.0007 31 1 3.5285 -3.2971 0.4070 32 1 5.6185 -2.8089 1.5892 33 1 5.9537 -1.3632 0.5412 34 1 4.9996 -1.9130 -1.9499 35 1 4.2805 -3.5815 -1.9077 36 1 7.9461 -2.3232 -0.7878 37 1 7.4590 -3.4048 -2.1647 38 1 8.0657 -4.2096 0.7709 39 1 8.5671 -5.4881 -1.8754 40 1 9.7696 -6.9103 -3.0245 41 1 11.4616 -8.8506 -3.4179 42 1 12.9567 -10.4979 -1.7226 43 1 13.4709 -11.0120 0.5864 44 1 12.3965 -9.7329 2.4253 45 1 10.8091 -7.9416 1.8862 46 1 5.9308 -5.4100 -1.1369 47 1 5.8003 -5.1388 0.6554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964294040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:44 Heat of formation + Delta-G solvation = 76.902227 kcal Electronic energy + Delta-G solvation = -27671.864974 eV Core-core repulsion = 23821.431933 eV Total energy + Delta-G solvation = -3850.433041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22641 -41.60970 -39.94576 -37.51810 -37.26474 -35.23073 -34.04731 -33.53074 -32.00438 -30.85496 -29.00677 -26.75389 -26.66208 -26.01956 -24.92636 -24.50680 -22.94324 -22.40332 -21.51992 -21.09760 -19.80298 -18.94261 -18.57705 -17.67227 -17.17397 -16.96181 -16.86665 -16.55463 -16.41004 -16.14899 -15.82907 -15.53043 -15.33758 -15.22067 -14.86479 -14.61893 -14.02852 -13.76608 -13.63288 -13.57979 -13.53028 -13.37086 -12.97829 -12.88189 -12.81692 -12.53610 -12.38298 -12.26925 -12.19444 -12.00360 -11.85423 -11.45189 -11.37316 -11.05114 -10.94772 -10.83570 -10.69643 -9.95088 -9.64538 -9.25407 -8.35497 -8.01716 -5.34379 -0.24376 0.25308 1.34676 1.38328 1.41981 1.49365 1.67018 2.34764 2.43640 2.49316 2.72178 3.28211 3.46929 3.52159 3.59487 3.69586 3.81538 3.85222 3.92484 3.95272 4.01700 4.07396 4.10725 4.26366 4.30654 4.41749 4.58312 4.59963 4.77567 4.81408 4.83503 4.85978 4.92649 4.95471 4.98028 5.07257 5.09360 5.15675 5.23209 5.30006 5.32799 5.36960 5.49447 5.63596 5.64529 5.73252 5.79537 5.85978 6.23814 6.30548 6.73272 7.08862 7.40171 7.86496 8.06387 9.19986 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035765 B = 0.001735 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.690225 B =16136.751389 C =16376.813544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.234 4.234 8 H 0.054 0.946 9 N -0.742 5.742 10 C 0.148 3.852 11 C -0.123 4.123 12 C -0.090 4.090 13 C -0.137 4.137 14 C -0.113 4.113 15 C 0.130 3.870 16 N -0.702 5.702 17 C 0.585 3.415 18 O -0.602 6.602 19 C -0.285 4.285 20 C -0.109 4.109 21 C -0.061 4.061 22 N -0.343 5.343 23 C 0.049 3.951 24 C -0.147 4.147 25 C -0.099 4.099 26 C -0.128 4.128 27 C 0.093 3.907 28 C -0.123 4.123 29 H 0.257 0.743 30 H 0.367 0.633 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.413 0.587 40 H 0.178 0.822 41 H 0.212 0.788 42 H 0.206 0.794 43 H 0.187 0.813 44 H 0.159 0.841 45 H 0.130 0.870 46 H 0.097 0.903 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.485 -23.245 -7.149 42.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.365 4.365 8 H 0.072 0.928 9 N -0.384 5.384 10 C 0.039 3.961 11 C -0.162 4.162 12 C -0.091 4.091 13 C -0.177 4.177 14 C -0.151 4.151 15 C 0.025 3.975 16 N -0.352 5.352 17 C 0.377 3.623 18 O -0.485 6.485 19 C -0.295 4.295 20 C -0.130 4.130 21 C -0.185 4.185 22 N -0.007 5.007 23 C -0.071 4.071 24 C -0.167 4.167 25 C -0.120 4.120 26 C -0.147 4.147 27 C -0.018 4.018 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.250 0.750 40 H 0.195 0.805 41 H 0.229 0.771 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.176 0.824 45 H 0.148 0.852 46 H 0.115 0.885 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 34.391 -23.446 -6.415 42.114 hybrid contribution -0.581 1.258 0.015 1.386 sum 33.810 -22.187 -6.401 40.943 Atomic orbital electron populations 1.69897 1.07181 1.26642 1.59866 1.25543 0.96165 1.01359 1.02736 0.85364 0.78577 0.79414 0.78157 1.20234 1.22346 1.17674 1.19120 0.82916 0.93412 1.41064 0.92763 1.42747 1.02352 1.03919 1.89351 1.21891 0.90582 0.87627 0.95952 1.23125 0.95900 0.99532 0.97611 1.21877 0.94570 0.95316 0.97339 1.23407 0.96026 1.00481 0.97827 1.23134 0.94205 0.97141 1.00617 1.22346 0.88905 0.88752 0.97477 1.45603 1.44374 1.34783 1.10473 1.17454 0.78601 0.80205 0.86070 1.90741 1.68963 1.73278 1.15547 1.19406 1.09835 1.05374 0.94863 1.21381 0.99201 0.98458 0.93922 1.22338 1.05072 1.02531 0.88568 1.41843 1.28190 1.23088 1.07558 1.22556 0.93185 0.91091 1.00310 1.21303 1.02510 1.02447 0.90404 1.21562 0.94623 0.93864 1.01957 1.20844 1.00348 1.00051 0.93493 1.18850 0.97877 0.95570 0.89498 1.23187 0.95772 0.94868 1.02355 0.93400 0.79981 0.91707 0.91522 0.89547 0.90321 0.92114 0.90190 0.87394 0.88925 0.74983 0.80476 0.77117 0.77676 0.79584 0.82372 0.85250 0.88471 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.45 13.97 21.65 0.30 -64.15 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.96 46.34 27.74 68.60 1.90 48.24 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 7 C -0.23 -13.72 10.45 84.03 0.88 -12.84 16 8 H 0.05 3.49 8.06 -2.92 -0.02 3.47 16 9 N -0.74 -35.52 5.20 -319.94 -1.67 -37.18 16 10 C 0.15 5.77 4.48 45.63 0.20 5.97 16 11 C -0.12 -3.81 7.59 30.88 0.23 -3.57 16 12 C -0.09 -2.33 1.11 -52.31 -0.06 -2.39 16 13 C -0.14 -4.34 7.64 30.88 0.24 -4.10 16 14 C -0.11 -2.28 7.59 30.89 0.23 -2.05 16 15 C 0.13 3.03 4.24 45.63 0.19 3.23 16 16 N -0.70 -14.72 5.35 -443.88 -2.37 -17.10 16 17 C 0.58 15.87 7.77 86.31 0.67 16.54 16 18 O -0.60 -21.18 15.26 -4.62 -0.07 -21.25 16 19 C -0.29 -6.44 6.20 -19.76 -0.12 -6.56 16 20 C -0.11 -1.54 10.27 22.29 0.23 -1.31 16 21 C -0.06 -0.66 11.53 83.04 0.96 0.29 16 22 N -0.34 -4.84 2.92 -346.31 -1.01 -5.85 16 23 C 0.05 0.35 10.89 83.19 0.91 1.26 16 24 C -0.15 -0.97 9.97 22.03 0.22 -0.75 16 25 C -0.10 -1.21 10.09 22.33 0.23 -0.99 16 26 C -0.13 -2.66 9.72 22.33 0.22 -2.44 16 27 C 0.09 2.01 6.70 39.42 0.26 2.27 16 28 C -0.12 -3.04 7.64 30.89 0.24 -2.80 16 29 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 30 H 0.37 16.69 5.79 -92.71 -0.54 16.16 16 31 H 0.06 2.71 8.10 -2.39 -0.02 2.69 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.57 8.12 -2.38 -0.02 2.55 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.11 1.72 8.12 -2.39 -0.02 1.70 16 38 H 0.09 2.60 7.46 -2.39 -0.02 2.58 16 39 H 0.41 5.91 7.69 -92.70 -0.71 5.19 16 40 H 0.18 1.35 7.53 -2.91 -0.02 1.32 16 41 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.21 -0.38 8.06 -2.91 -0.02 -0.40 16 43 H 0.19 -0.24 8.06 -2.91 -0.02 -0.26 16 44 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 45 H 0.13 3.23 7.07 -2.91 -0.02 3.21 16 46 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.84 387.87 2.97 -80.87 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -0.31 Total: 30.23 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: 6.19 Total: -13.81 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -4.75 Total: -124.28 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.07 Total: -21.25 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.90 Total: 48.24 kcal Total: -83.84 2.97 -80.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964294040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.773 kcal (2) G-P(sol) polarization free energy of solvation -83.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds