Wall clock time and date at job start Tue Mar 31 2020 22:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21615 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.47381 * 120.00129 * 179.97438 * 17 16 15 20 20 C 1.39323 * 120.34013 * 359.72560 * 19 17 16 21 21 C 1.38279 * 120.19299 * 179.80263 * 20 19 17 22 22 C 1.38055 * 120.88570 * 0.45988 * 21 20 19 23 23 C 1.38980 * 120.26897 * 359.77351 * 22 21 20 24 24 N 1.37794 * 133.37344 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.07344 * 359.97438 * 24 23 22 26 26 C 1.36550 * 109.85449 * 180.02562 * 24 23 22 27 27 C 1.34542 * 109.89751 * 0.02562 * 26 24 23 28 28 C 1.40670 * 119.52145 * 0.02562 * 23 22 21 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.08000 * 119.89907 * 0.02562 * 20 19 17 42 42 H 1.07991 * 119.55448 * 180.23417 * 21 20 19 43 43 H 1.07996 * 119.86477 * 179.80631 * 22 21 20 44 44 H 1.07999 * 125.05053 * 179.97438 * 26 24 23 45 45 H 1.07999 * 126.49636 * 180.02562 * 27 26 24 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09000 * 113.66011 * 36.14689 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 6.7081 -4.9816 -2.7429 17 6 6.9774 -6.1472 -3.3637 18 8 7.6765 -6.9794 -2.8180 19 6 6.4238 -6.4138 -4.7033 20 6 5.6166 -5.4682 -5.3321 21 6 5.1021 -5.7197 -6.5907 22 6 5.3684 -6.9082 -7.2407 23 6 6.1663 -7.8731 -6.6374 24 7 6.5980 -9.1224 -7.0265 25 1 6.3804 -9.5498 -7.8697 26 6 7.3771 -9.6696 -6.0476 27 6 7.4770 -8.8169 -5.0117 28 6 6.7005 -7.6303 -5.3589 29 6 7.4011 -3.2179 -1.0907 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 3.5285 -3.2969 0.4087 33 1 5.6183 -2.8078 1.5906 34 1 5.9537 -1.3631 0.5416 35 1 4.9997 -1.9148 -1.9492 36 1 4.2805 -3.5832 -1.9056 37 1 6.6294 -5.0062 0.6928 38 1 5.3450 -5.4022 -0.5302 39 1 8.1578 -5.2954 -1.2014 40 1 6.1503 -4.3180 -3.1779 41 1 5.3950 -4.5345 -4.8365 42 1 4.4806 -4.9780 -7.0702 43 1 4.9554 -7.0887 -8.2221 44 1 7.8430 -10.6427 -6.0971 45 1 8.0285 -8.9787 -4.0973 46 1 7.4912 -2.5880 -1.9757 47 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965249901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:14 Heat of formation + Delta-G solvation = 86.426451 kcal Electronic energy + Delta-G solvation = -28405.465231 eV Core-core repulsion = 24555.445192 eV Total energy + Delta-G solvation = -3850.020039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56262 -40.65505 -39.02087 -36.92496 -35.89541 -33.54886 -32.48608 -31.91687 -30.26470 -29.55739 -29.06750 -25.77841 -25.33334 -24.70139 -23.87329 -22.37244 -21.90027 -21.17657 -20.63922 -19.94114 -18.49745 -17.96642 -17.33321 -17.07605 -16.30709 -15.96910 -15.43953 -15.29641 -15.02143 -14.79729 -14.46544 -14.36850 -14.13527 -14.03152 -13.47052 -13.18588 -12.92390 -12.84918 -12.64535 -12.59730 -12.18410 -11.96670 -11.84568 -11.75626 -11.67900 -11.48705 -11.15482 -10.95185 -10.81953 -10.21266 -9.98637 -9.96441 -9.92875 -9.75547 -9.68678 -9.42575 -9.01071 -8.87132 -8.53769 -7.98467 -7.25864 -5.77874 -3.13023 0.44640 1.29580 2.46650 2.80909 2.82098 3.09827 3.36504 3.39373 3.44561 3.78421 4.41944 4.52890 4.57997 4.59162 4.64016 4.69159 4.75694 4.85036 4.90395 4.95443 5.08644 5.24179 5.29053 5.41455 5.50351 5.60504 5.63741 5.68307 5.76494 5.77626 5.85319 5.86100 5.90886 6.04040 6.09231 6.14103 6.16816 6.19043 6.24821 6.29710 6.37639 6.48213 6.51232 6.61907 6.81621 6.83480 7.01247 7.20849 7.50876 7.99558 8.21060 8.42193 9.20311 9.93009 10.13265 11.40512 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002454 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.500017 B =11405.417733 C =12655.659756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.738 5.738 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.105 4.105 13 C -0.145 4.145 14 C -0.126 4.126 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.562 3.438 18 O -0.536 6.536 19 C -0.091 4.091 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.103 4.103 23 C 0.083 3.917 24 N -0.597 5.597 25 H 0.416 0.584 26 C 0.046 3.954 27 C -0.186 4.186 28 C -0.057 4.057 29 C -0.133 4.133 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.402 0.598 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.172 0.828 45 H 0.157 0.843 46 H 0.071 0.929 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.504 -16.798 -14.491 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.181 4.181 12 C -0.106 4.106 13 C -0.185 4.185 14 C -0.165 4.165 15 C 0.018 3.982 16 N -0.356 5.356 17 C 0.350 3.650 18 O -0.414 6.414 19 C -0.095 4.095 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.024 4.024 24 N -0.200 5.200 25 H 0.252 0.748 26 C -0.079 4.079 27 C -0.211 4.211 28 C -0.063 4.063 29 C -0.171 4.171 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.239 0.761 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.189 0.811 45 H 0.174 0.826 46 H 0.089 0.911 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.717 -17.514 -14.159 28.656 hybrid contribution 0.079 1.412 -0.659 1.560 sum 17.796 -16.103 -14.818 28.206 Atomic orbital electron populations 1.69704 1.05121 1.25821 1.57489 1.24701 0.95253 0.97235 1.02036 0.86548 0.79228 0.84999 0.77749 1.21106 1.21758 1.20315 1.19152 0.80753 0.94727 1.42947 0.89178 1.42776 1.04045 1.02065 1.88838 1.21490 0.89582 0.89757 0.92722 1.23302 0.98824 0.98809 0.97137 1.22359 0.94035 0.95128 0.99055 1.23585 0.95088 1.00072 0.99790 1.23129 0.99339 0.95402 0.98582 1.21837 0.97279 0.97069 0.81989 1.45627 1.52803 1.18848 1.18322 1.18126 0.80212 0.81647 0.85004 1.90731 1.38264 1.45455 1.66906 1.19333 1.01148 0.94437 0.94538 1.21187 0.97023 0.98659 0.95520 1.20754 1.00442 0.96595 0.94891 1.20192 0.99184 0.92830 1.00212 1.18182 1.01054 0.87630 0.95503 1.41716 1.45119 1.14595 1.18615 0.74770 1.21974 0.97409 0.99544 0.89016 1.21941 1.05612 0.92944 1.00575 1.18961 0.99723 0.94313 0.93320 1.23161 0.97803 0.94962 1.01163 0.93067 0.80517 0.90024 0.91893 0.90514 0.90267 0.92284 0.89147 0.90908 0.88233 0.76143 0.85306 0.84815 0.85854 0.81075 0.82565 0.91076 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.97 55.49 0.78 -28.43 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.21 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.87 10.45 -15.05 -0.16 -7.02 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.74 -17.15 5.20 -52.47 -0.27 -17.42 16 10 C 0.18 3.28 4.48 -66.95 -0.30 2.98 16 11 C -0.14 -2.14 7.59 -26.28 -0.20 -2.34 16 12 C -0.11 -1.37 1.02 -154.71 -0.16 -1.52 16 13 C -0.14 -2.23 6.97 -26.28 -0.18 -2.41 16 14 C -0.13 -1.55 7.64 -26.28 -0.20 -1.75 16 15 C 0.12 1.46 4.31 -66.95 -0.29 1.17 16 16 N -0.70 -8.36 5.21 -53.94 -0.28 -8.64 16 17 C 0.56 7.70 7.76 -12.54 -0.10 7.60 16 18 O -0.54 -8.69 14.69 5.26 0.08 -8.62 16 19 C -0.09 -1.13 5.90 -104.75 -0.62 -1.75 16 20 C -0.10 -1.07 9.53 -39.16 -0.37 -1.44 16 21 C -0.11 -0.95 9.99 -39.63 -0.40 -1.35 16 22 C -0.10 -0.89 10.05 -39.37 -0.40 -1.28 16 23 C 0.08 0.83 7.27 -83.99 -0.61 0.22 16 24 N -0.60 -4.36 6.06 -10.66 -0.06 -4.42 16 25 H 0.42 1.60 8.96 -40.82 -0.37 1.24 16 26 C 0.05 0.36 11.82 -16.76 -0.20 0.16 16 27 C -0.19 -2.09 10.24 -37.78 -0.39 -2.48 16 28 C -0.06 -0.71 6.15 -104.85 -0.64 -1.35 16 29 C -0.13 -1.46 7.59 -26.29 -0.20 -1.66 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.36 8.27 5.78 -40.82 -0.24 8.03 16 32 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 36 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.23 7.47 -51.92 -0.39 0.85 16 40 H 0.40 4.26 6.04 -40.82 -0.25 4.01 16 41 H 0.13 1.12 6.40 -52.49 -0.34 0.78 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.16 1.87 7.16 -52.49 -0.38 1.49 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 383.39 15.07 5.78 5.78 Total: -1.00 -34.84 383.39 -10.81 -45.65 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.61 Total: 13.14 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -5.50 Total: -14.24 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.16 Total: -58.92 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.62 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.84 -10.81 -45.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965249901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.075 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds