Wall clock time and date at job start Tue Mar 31 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48499 * 109.47270 * 29.99691 * 3 2 1 6 6 H 1.48503 * 109.47166 * 149.99922 * 3 2 1 7 7 C 1.38824 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99812 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99745 * 180.02562 * 7 2 1 10 10 C 1.46496 * 119.99523 * 179.97438 * 9 7 2 11 11 C 1.53950 * 113.57704 * 204.99971 * 10 9 7 12 12 C 1.52917 * 86.78481 * 220.66472 * 11 10 9 13 13 C 1.52910 * 88.03725 * 24.89796 * 12 11 10 14 14 C 1.52907 * 121.13500 * 259.18681 * 12 11 10 15 15 C 1.53951 * 86.77862 * 209.37544 * 14 12 11 16 16 N 1.46497 * 113.58023 * 270.12860 * 15 14 12 17 17 C 1.34782 * 120.00156 * 252.71922 * 16 15 14 18 18 O 1.21615 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.47381 * 120.00129 * 179.97438 * 17 16 15 20 20 C 1.39323 * 120.34013 * 359.72560 * 19 17 16 21 21 C 1.38279 * 120.19299 * 179.80263 * 20 19 17 22 22 C 1.38055 * 120.88570 * 0.45988 * 21 20 19 23 23 C 1.38980 * 120.26897 * 359.77351 * 22 21 20 24 24 N 1.37794 * 133.37344 * 180.02562 * 23 22 21 25 25 H 0.97004 * 125.07344 * 359.97438 * 24 23 22 26 26 C 1.36550 * 109.85449 * 180.02562 * 24 23 22 27 27 C 1.34542 * 109.89751 * 0.02562 * 26 24 23 28 28 C 1.40670 * 119.52145 * 0.02562 * 23 22 21 29 29 C 1.52903 * 121.14033 * 150.61779 * 12 11 10 30 30 H 0.96993 * 119.99847 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00179 * 359.97438 * 9 7 2 32 32 H 1.09001 * 112.88282 * 336.14406 * 10 9 7 33 33 H 1.09001 * 113.66397 * 106.19519 * 11 10 9 34 34 H 1.08997 * 113.74917 * 335.15122 * 11 10 9 35 35 H 1.09007 * 113.66009 * 89.57273 * 13 12 11 36 36 H 1.09002 * 113.66292 * 220.62357 * 13 12 11 37 37 H 1.08995 * 113.66604 * 323.84486 * 14 12 11 38 38 H 1.08996 * 113.66613 * 94.90557 * 14 12 11 39 39 H 1.09008 * 113.58062 * 139.33642 * 15 14 12 40 40 H 0.96996 * 120.00134 * 72.71944 * 16 15 14 41 41 H 1.08000 * 119.89907 * 0.02562 * 20 19 17 42 42 H 1.07991 * 119.55448 * 180.23417 * 21 20 19 43 43 H 1.07996 * 119.86477 * 179.80631 * 22 21 20 44 44 H 1.07999 * 125.05053 * 179.97438 * 26 24 23 45 45 H 1.07999 * 126.49636 * 180.02562 * 27 26 24 46 46 H 1.08999 * 113.66373 * 265.09616 * 29 12 11 47 47 H 1.09000 * 113.66011 * 36.14689 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.5272 -2.3645 0.5990 12 6 5.9800 -3.2901 -0.5309 13 6 4.7836 -2.7956 -1.3446 14 6 6.2080 -4.7823 -0.2871 15 6 7.2580 -4.7169 -1.4111 16 7 6.7081 -4.9816 -2.7429 17 6 6.9774 -6.1472 -3.3637 18 8 7.6765 -6.9794 -2.8180 19 6 6.4238 -6.4138 -4.7033 20 6 5.6166 -5.4682 -5.3321 21 6 5.1021 -5.7197 -6.5907 22 6 5.3684 -6.9082 -7.2407 23 6 6.1663 -7.8731 -6.6374 24 7 6.5980 -9.1224 -7.0265 25 1 6.3804 -9.5498 -7.8697 26 6 7.3771 -9.6696 -6.0476 27 6 7.4770 -8.8169 -5.0117 28 6 6.7005 -7.6303 -5.3589 29 6 7.4011 -3.2179 -1.0907 30 1 -0.4849 0.8400 0.0004 31 1 3.8647 -0.3622 0.0007 32 1 3.5285 -3.2969 0.4087 33 1 5.6183 -2.8078 1.5906 34 1 5.9537 -1.3631 0.5416 35 1 4.9997 -1.9148 -1.9492 36 1 4.2805 -3.5832 -1.9056 37 1 6.6294 -5.0062 0.6928 38 1 5.3450 -5.4022 -0.5302 39 1 8.1578 -5.2954 -1.2014 40 1 6.1503 -4.3180 -3.1779 41 1 5.3950 -4.5345 -4.8365 42 1 4.4806 -4.9780 -7.0702 43 1 4.9554 -7.0887 -8.2221 44 1 7.8430 -10.6427 -6.0971 45 1 8.0285 -8.9787 -4.0973 46 1 7.4912 -2.5880 -1.9757 47 1 8.1579 -3.0020 -0.3365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965249901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:13 Heat of formation + Delta-G solvation = 63.801209 kcal Electronic energy + Delta-G solvation = -28406.446335 eV Core-core repulsion = 24555.445192 eV Total energy + Delta-G solvation = -3851.001143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.29862 -41.71695 -40.08037 -37.68555 -37.26573 -35.15540 -33.77317 -32.86667 -32.02467 -30.33889 -29.79610 -26.75111 -26.58604 -26.13548 -25.12806 -23.56582 -22.66512 -22.20846 -21.45229 -21.29313 -19.75652 -19.22532 -18.74986 -17.87705 -17.05906 -16.95581 -16.89617 -16.28810 -16.03629 -15.93739 -15.74384 -15.34842 -15.15786 -15.06594 -14.83961 -14.55130 -14.13530 -13.92721 -13.68035 -13.56389 -13.47407 -13.17753 -12.98627 -12.89075 -12.66686 -12.56525 -12.43959 -12.33464 -12.28906 -11.97445 -11.82269 -11.20370 -11.06195 -10.90142 -10.81903 -10.72124 -10.68710 -10.01301 -9.25337 -9.24618 -8.69755 -8.00762 -5.33409 -0.33035 0.56826 1.39252 1.42955 1.50420 1.69598 1.95634 2.13212 2.26311 2.50211 2.96361 3.29339 3.48099 3.54307 3.66475 3.69183 3.82370 3.90235 3.93475 4.01410 4.10614 4.19246 4.27717 4.30974 4.39591 4.60267 4.62951 4.66254 4.83994 4.85550 4.87652 4.92871 4.95632 5.00551 5.01614 5.10608 5.11509 5.14928 5.24868 5.37663 5.44819 5.48429 5.61560 5.67394 5.71452 5.74603 5.80765 6.10418 6.24852 6.55584 6.71706 7.10123 7.22816 7.87768 8.07537 9.21080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.002454 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.500017 B =11405.417733 C =12655.659756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.250 1.250 7 C -0.232 4.232 8 H 0.053 0.947 9 N -0.741 5.741 10 C 0.149 3.851 11 C -0.128 4.128 12 C -0.092 4.092 13 C -0.135 4.135 14 C -0.126 4.126 15 C 0.122 3.878 16 N -0.698 5.698 17 C 0.558 3.442 18 O -0.572 6.572 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.092 4.092 23 C 0.067 3.933 24 N -0.582 5.582 25 H 0.435 0.565 26 C 0.079 3.921 27 C -0.238 4.238 28 C -0.087 4.087 29 C -0.116 4.116 30 H 0.257 0.743 31 H 0.367 0.633 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.408 0.592 41 H 0.139 0.861 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.213 0.787 45 H 0.136 0.864 46 H 0.080 0.920 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.691 -16.572 -16.367 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.363 4.363 8 H 0.071 0.929 9 N -0.383 5.383 10 C 0.040 3.960 11 C -0.167 4.167 12 C -0.093 4.093 13 C -0.175 4.175 14 C -0.165 4.165 15 C 0.017 3.983 16 N -0.349 5.349 17 C 0.347 3.653 18 O -0.452 6.452 19 C -0.130 4.130 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.112 4.112 23 C -0.040 4.040 24 N -0.186 5.186 25 H 0.275 0.725 26 C -0.048 4.048 27 C -0.263 4.263 28 C -0.093 4.093 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.201 0.799 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.246 0.754 41 H 0.157 0.843 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.230 0.770 45 H 0.154 0.846 46 H 0.099 0.901 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.948 -17.314 -16.065 30.916 hybrid contribution -0.648 1.145 -0.121 1.321 sum 19.301 -16.169 -16.187 29.933 Atomic orbital electron populations 1.69897 1.07243 1.26647 1.59909 1.25556 0.96147 1.01400 1.02800 0.85363 0.78607 0.79364 0.78155 1.20249 1.22536 1.17494 1.19097 0.82952 0.93277 1.40955 0.92924 1.42741 1.02288 1.03935 1.89304 1.21850 0.90884 0.87514 0.95719 1.23192 0.95489 0.99864 0.98144 1.22172 0.94649 0.95106 0.97327 1.23401 0.95670 1.00274 0.98176 1.23191 0.99006 0.94569 0.99686 1.21851 0.96847 0.97924 0.81703 1.45596 1.52520 1.18514 1.18307 1.18462 0.79707 0.81530 0.85573 1.90697 1.40037 1.46594 1.67906 1.19392 1.03337 0.95781 0.94489 1.21406 0.96196 0.98495 0.96168 1.21106 1.00688 0.97515 0.94434 1.20604 0.97535 0.91921 1.01142 1.18401 1.01650 0.88944 0.95003 1.41747 1.44056 1.13673 1.19169 0.72480 1.22489 0.95101 0.99866 0.87388 1.21930 1.08111 0.94509 1.01719 1.19345 1.00520 0.94711 0.94732 1.23134 0.96341 0.94002 1.01857 0.93417 0.79929 0.92011 0.90989 0.89659 0.89847 0.92504 0.87619 0.92582 0.88730 0.75424 0.84314 0.82301 0.82590 0.77000 0.84622 0.90100 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.59 13.97 21.66 0.30 -63.29 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 3 Si 0.96 45.19 27.74 68.60 1.90 47.09 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 7 C -0.23 -13.23 10.45 84.04 0.88 -12.35 16 8 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 9 N -0.74 -34.07 5.20 -319.92 -1.67 -35.74 16 10 C 0.15 5.50 4.48 45.63 0.20 5.71 16 11 C -0.13 -3.59 7.59 30.89 0.23 -3.35 16 12 C -0.09 -2.21 1.02 -52.31 -0.05 -2.26 16 13 C -0.13 -4.01 6.97 30.88 0.22 -3.80 16 14 C -0.13 -2.97 7.64 30.88 0.24 -2.74 16 15 C 0.12 2.75 4.31 45.63 0.20 2.95 16 16 N -0.70 -16.51 5.21 -442.81 -2.31 -18.82 16 17 C 0.56 15.94 7.76 86.65 0.67 16.61 16 18 O -0.57 -19.70 14.69 -4.08 -0.06 -19.76 16 19 C -0.13 -3.25 5.90 -19.95 -0.12 -3.37 16 20 C -0.10 -2.07 9.53 22.54 0.21 -1.86 16 21 C -0.12 -1.89 9.99 22.24 0.22 -1.67 16 22 C -0.09 -1.36 10.05 22.40 0.23 -1.13 16 23 C 0.07 1.26 7.27 38.98 0.28 1.54 16 24 N -0.58 -7.14 6.06 -187.64 -1.14 -8.28 16 25 H 0.43 1.91 8.96 -92.71 -0.83 1.08 16 26 C 0.08 1.10 11.82 83.11 0.98 2.08 16 27 C -0.24 -5.55 10.24 23.43 0.24 -5.31 16 28 C -0.09 -2.20 6.15 -20.01 -0.12 -2.33 16 29 C -0.12 -2.21 7.59 30.88 0.23 -1.98 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.37 16.01 5.78 -92.71 -0.54 15.47 16 32 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 35 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 37 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 2.29 7.47 -2.38 -0.02 2.27 16 40 H 0.41 8.41 6.04 -92.71 -0.56 7.85 16 41 H 0.14 2.33 6.40 -2.91 -0.02 2.31 16 42 H 0.16 1.66 8.06 -2.92 -0.02 1.63 16 43 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 44 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.14 3.61 7.16 -2.91 -0.02 3.59 16 46 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -80.06 383.39 1.29 -78.77 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.96 Total: 36.83 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 5.21 Total: -16.81 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -4.81 Total: -126.13 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.06 Total: -19.76 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -80.06 1.29 -78.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965249901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.574 kcal (2) G-P(sol) polarization free energy of solvation -80.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds