Wall clock time and date at job start Tue Mar 31 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99598 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 119.99936 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21590 * 119.99937 * 359.97438 * 17 16 15 19 19 C 1.47499 * 119.99921 * 180.02562 * 17 16 15 20 20 C 1.41188 * 126.37484 * 179.97438 * 19 17 16 21 21 C 1.37991 * 106.86863 * 179.97438 * 20 19 17 22 22 C 1.41390 * 131.98222 * 180.02562 * 21 20 19 23 23 C 1.35738 * 119.32903 * 180.02562 * 22 21 20 24 24 C 1.40828 * 119.72146 * 359.88446 * 23 22 21 25 25 C 1.34530 * 120.58547 * 0.07322 * 24 23 22 26 26 N 1.37443 * 120.74082 * 359.97438 * 25 24 23 27 27 C 1.35127 * 131.28517 * 180.29178 * 26 25 24 28 28 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 29 29 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 31 31 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 32 32 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 33 33 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 34 34 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 35 35 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 36 36 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 37 37 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 38 38 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 39 39 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 40 40 H 1.08004 * 126.56732 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.33468 * 359.95267 * 22 21 20 42 42 H 1.08004 * 120.14189 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.70700 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.63534 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.62056 * 359.95859 * 27 26 25 46 46 H 1.08990 * 113.66878 * 265.09053 * 28 12 11 47 47 H 1.09008 * 113.66523 * 36.15077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1243 -9.2218 2.6146 19 6 3.4527 -11.1606 1.5022 20 6 4.3232 -12.0922 2.1085 21 6 4.0474 -13.3222 1.5470 22 6 4.5989 -14.6059 1.7639 23 6 4.1251 -15.6616 1.0543 24 6 3.0926 -15.4659 0.1168 25 6 2.5726 -14.2413 -0.0830 26 7 3.0368 -13.1572 0.6228 27 6 2.6737 -11.8558 0.5988 28 6 1.0599 -6.8787 1.0890 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0023 31 1 3.0653 -3.5642 -0.4088 32 1 1.5973 -5.1293 -1.5917 33 1 0.1782 -4.6962 -0.5422 34 1 1.1318 -4.1478 1.9482 35 1 2.9356 -4.3598 1.9065 36 1 2.9951 -7.1043 -0.6938 37 1 3.9799 -6.1903 0.5299 38 1 2.8043 -7.2489 2.4010 39 1 1.9071 -9.3338 0.4669 40 1 5.0633 -11.8825 2.8667 41 1 5.3900 -14.7449 2.4859 42 1 4.5371 -16.6479 1.2091 43 1 2.7155 -16.3061 -0.4473 44 1 1.7815 -14.1086 -0.8061 45 1 1.9035 -11.4291 -0.0265 46 1 0.4691 -6.6421 1.9737 47 1 0.4949 -7.4261 0.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965335845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:48 Heat of formation + Delta-G solvation = 95.115561 kcal Electronic energy + Delta-G solvation = -27345.808030 eV Core-core repulsion = 23496.164778 eV Total energy + Delta-G solvation = -3849.643251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62237 -40.46334 -39.02722 -36.83222 -35.79654 -33.61705 -33.48971 -32.22498 -30.38863 -29.42859 -28.18143 -25.72457 -25.18192 -25.09501 -23.99018 -23.16590 -22.37828 -21.59137 -20.30882 -19.86850 -18.13466 -17.80032 -17.45748 -16.98726 -16.48095 -16.13609 -15.92592 -15.64891 -15.23004 -14.87531 -14.67164 -14.61984 -14.23034 -14.06561 -13.79700 -13.34142 -12.83609 -12.76607 -12.54276 -12.45562 -12.39413 -12.08890 -11.88581 -11.74431 -11.58752 -11.23757 -11.15333 -10.89556 -10.80865 -10.71374 -10.31304 -10.08919 -9.95033 -9.75402 -9.64443 -9.34777 -9.11771 -8.87887 -8.81493 -7.83646 -6.91569 -5.74555 -3.02751 0.29672 0.88482 1.79954 2.20520 3.03094 3.12496 3.36394 3.46551 3.50840 3.51894 3.98107 4.26614 4.32915 4.46675 4.60573 4.61148 4.63176 4.73180 4.75600 4.84593 4.93732 4.96555 5.12128 5.34150 5.43337 5.48529 5.49860 5.60823 5.68044 5.75198 5.78673 5.85306 5.89839 5.95516 5.99711 6.03233 6.16669 6.24896 6.29575 6.30528 6.39958 6.40817 6.46174 6.58966 6.70200 6.77530 6.98399 7.18488 7.46245 7.73328 8.18059 8.44476 9.55391 10.14371 10.48810 11.47911 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.001596 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.822606 B =17540.242783 C =17902.754633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.135 4.135 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.125 4.125 15 C 0.125 3.875 16 N -0.715 5.715 17 C 0.585 3.415 18 O -0.537 6.537 19 C -0.166 4.166 20 C -0.133 4.133 21 C 0.023 3.977 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.133 4.133 25 C 0.038 3.962 26 N -0.338 5.338 27 C -0.012 4.012 28 C -0.131 4.131 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.397 0.603 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.146 0.854 44 H 0.162 0.838 45 H 0.176 0.824 46 H 0.073 0.927 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -35.457 -0.535 35.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.102 4.102 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.021 3.979 16 N -0.365 5.365 17 C 0.372 3.628 18 O -0.414 6.414 19 C -0.174 4.174 20 C -0.157 4.157 21 C -0.081 4.081 22 C -0.091 4.091 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.080 4.080 26 N -0.001 5.001 27 C -0.146 4.146 28 C -0.169 4.169 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.231 0.769 40 H 0.174 0.826 41 H 0.162 0.838 42 H 0.152 0.848 43 H 0.164 0.836 44 H 0.180 0.820 45 H 0.193 0.807 46 H 0.092 0.908 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.625 -35.028 -0.114 35.332 hybrid contribution -0.295 0.612 -0.426 0.802 sum 4.329 -34.416 -0.540 34.691 Atomic orbital electron populations 1.69652 1.05125 1.25762 1.57682 1.24750 0.95513 0.97726 1.02958 0.86268 0.78531 0.83534 0.77871 1.21276 1.21718 1.21240 1.19285 0.91084 0.84305 1.42711 0.91149 1.42408 1.05711 0.99919 1.87078 1.21543 0.95267 0.84843 0.92747 1.23265 1.00529 0.97255 0.96416 1.22090 0.96252 0.92401 0.99479 1.23599 1.01367 0.93596 0.99724 1.23147 0.98353 0.96272 0.98557 1.22623 0.97608 0.77510 1.00195 1.45910 1.39013 1.09027 1.42552 1.17459 0.80061 0.84664 0.80570 1.90787 1.41967 1.74658 1.34002 1.19707 1.01731 0.93669 1.02254 1.21141 1.02555 0.88929 1.03121 1.18840 0.95883 0.95868 0.97539 1.20698 0.99442 0.89337 0.99593 1.20955 0.97960 0.99481 0.97343 1.20757 0.98266 0.96023 1.00269 1.21694 1.01610 0.85867 0.98842 1.41291 1.25259 1.06835 1.26762 1.22111 1.05185 0.81361 1.05894 1.23180 0.95589 0.96953 1.01159 0.93485 0.78140 0.90795 0.92318 0.90252 0.90139 0.92483 0.89950 0.90877 0.86695 0.76925 0.82637 0.83830 0.84787 0.83642 0.82036 0.80684 0.90792 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.82 9.97 -15.06 -0.15 -6.97 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -18.07 5.40 -52.47 -0.28 -18.35 16 10 C 0.17 3.36 4.48 -66.95 -0.30 3.06 16 11 C -0.14 -2.20 7.59 -26.28 -0.20 -2.40 16 12 C -0.10 -1.43 1.11 -154.71 -0.17 -1.60 16 13 C -0.14 -2.49 7.64 -26.28 -0.20 -2.69 16 14 C -0.12 -1.59 7.64 -26.28 -0.20 -1.79 16 15 C 0.12 1.52 4.24 -66.95 -0.28 1.23 16 16 N -0.72 -7.44 5.34 -53.90 -0.29 -7.73 16 17 C 0.59 7.49 7.82 -12.48 -0.10 7.40 16 18 O -0.54 -9.04 16.52 5.29 0.09 -8.96 16 19 C -0.17 -1.78 6.12 -105.07 -0.64 -2.42 16 20 C -0.13 -1.41 10.78 -38.55 -0.42 -1.83 16 21 C 0.02 0.20 6.70 -84.01 -0.56 -0.36 16 22 C -0.07 -0.47 10.11 -39.28 -0.40 -0.87 16 23 C -0.14 -0.69 10.07 -39.50 -0.40 -1.09 16 24 C -0.13 -0.58 9.97 -39.91 -0.40 -0.98 16 25 C 0.04 0.20 10.89 -16.35 -0.18 0.02 16 26 N -0.34 -2.67 2.92 -60.42 -0.18 -2.85 16 27 C -0.01 -0.09 11.09 -16.16 -0.18 -0.27 16 28 C -0.13 -1.52 7.59 -26.28 -0.20 -1.72 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 10.29 7.92 -40.82 -0.32 9.96 16 31 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.63 7.47 -51.92 -0.39 1.25 16 39 H 0.40 2.89 7.62 -40.82 -0.31 2.58 16 40 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.13 0.36 8.06 -52.48 -0.42 -0.07 16 43 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 44 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 45 H 0.18 0.77 7.42 -52.49 -0.39 0.38 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.08 0.80 8.12 -51.92 -0.42 0.38 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -34.99 393.45 -10.97 -45.96 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.87 Total: 9.83 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -5.07 Total: -13.77 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.02 Total: -56.57 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.99 -10.97 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965335845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.075 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds