Wall clock time and date at job start Tue Mar 31 2020 22:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47218 * 239.99598 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 119.99936 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21590 * 119.99937 * 359.97438 * 17 16 15 19 19 C 1.47499 * 119.99921 * 180.02562 * 17 16 15 20 20 C 1.41188 * 126.37484 * 179.97438 * 19 17 16 21 21 C 1.37991 * 106.86863 * 179.97438 * 20 19 17 22 22 C 1.41390 * 131.98222 * 180.02562 * 21 20 19 23 23 C 1.35738 * 119.32903 * 180.02562 * 22 21 20 24 24 C 1.40828 * 119.72146 * 359.88446 * 23 22 21 25 25 C 1.34530 * 120.58547 * 0.07322 * 24 23 22 26 26 N 1.37443 * 120.74082 * 359.97438 * 25 24 23 27 27 C 1.35127 * 131.28517 * 180.29178 * 26 25 24 28 28 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 29 29 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 31 31 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 32 32 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 33 33 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 34 34 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 35 35 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 36 36 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 37 37 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 38 38 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 39 39 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 40 40 H 1.08004 * 126.56732 * 359.97438 * 20 19 17 41 41 H 1.08001 * 120.33468 * 359.95267 * 22 21 20 42 42 H 1.08004 * 120.14189 * 179.97438 * 23 22 21 43 43 H 1.08001 * 119.70700 * 180.02562 * 24 23 22 44 44 H 1.07998 * 119.63534 * 179.97438 * 25 24 23 45 45 H 1.08001 * 125.62056 * 359.95859 * 27 26 25 46 46 H 1.08990 * 113.66878 * 265.09053 * 28 12 11 47 47 H 1.09008 * 113.66523 * 36.15077 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1243 -9.2218 2.6146 19 6 3.4527 -11.1606 1.5022 20 6 4.3232 -12.0922 2.1085 21 6 4.0474 -13.3222 1.5470 22 6 4.5989 -14.6059 1.7639 23 6 4.1251 -15.6616 1.0543 24 6 3.0926 -15.4659 0.1168 25 6 2.5726 -14.2413 -0.0830 26 7 3.0368 -13.1572 0.6228 27 6 2.6737 -11.8558 0.5988 28 6 1.0599 -6.8787 1.0890 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0023 31 1 3.0653 -3.5642 -0.4088 32 1 1.5973 -5.1293 -1.5917 33 1 0.1782 -4.6962 -0.5422 34 1 1.1318 -4.1478 1.9482 35 1 2.9356 -4.3598 1.9065 36 1 2.9951 -7.1043 -0.6938 37 1 3.9799 -6.1903 0.5299 38 1 2.8043 -7.2489 2.4010 39 1 1.9071 -9.3338 0.4669 40 1 5.0633 -11.8825 2.8667 41 1 5.3900 -14.7449 2.4859 42 1 4.5371 -16.6479 1.2091 43 1 2.7155 -16.3061 -0.4473 44 1 1.7815 -14.1086 -0.8061 45 1 1.9035 -11.4291 -0.0265 46 1 0.4691 -6.6421 1.9737 47 1 0.4949 -7.4261 0.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965335845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:47 Heat of formation + Delta-G solvation = 74.051958 kcal Electronic energy + Delta-G solvation = -27346.721416 eV Core-core repulsion = 23496.164778 eV Total energy + Delta-G solvation = -3850.556638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17915 -41.61096 -40.09455 -37.40365 -37.12804 -35.24803 -34.00813 -33.64447 -31.56734 -30.73628 -28.70961 -26.74554 -26.56077 -26.31363 -25.47763 -23.87523 -23.14316 -22.52999 -21.47959 -20.96013 -19.39670 -18.70724 -18.57801 -18.17453 -17.23248 -16.89677 -16.82741 -16.53981 -16.25346 -16.01500 -15.91154 -15.49143 -15.31315 -15.17903 -15.08249 -14.55910 -14.19238 -13.79114 -13.61730 -13.43745 -13.15496 -13.05379 -12.95867 -12.84233 -12.82385 -12.43245 -12.37459 -12.33416 -12.19628 -12.18788 -11.82933 -11.44500 -11.32565 -11.07173 -11.01355 -10.83747 -10.69242 -10.05437 -9.54076 -8.96195 -8.35833 -7.93982 -5.21715 -0.17738 0.37841 1.08227 1.47088 1.50026 1.56082 1.70325 2.25177 2.47624 2.57172 2.59971 3.37255 3.52042 3.52777 3.57475 3.69410 3.82288 3.88048 3.91399 4.01314 4.04933 4.19939 4.29148 4.30063 4.33863 4.40247 4.51718 4.63411 4.65167 4.82024 4.85137 4.90985 4.94599 4.96802 5.03338 5.07898 5.12202 5.15992 5.24655 5.28086 5.30585 5.43569 5.45428 5.57550 5.63727 5.67042 5.72490 5.87360 6.28765 6.30453 6.63558 7.28802 7.34494 8.12813 8.35896 9.29062 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.001596 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.822606 B =17540.242783 C =17902.754633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.120 4.120 12 C -0.089 4.089 13 C -0.140 4.140 14 C -0.119 4.119 15 C 0.128 3.872 16 N -0.697 5.697 17 C 0.584 3.416 18 O -0.591 6.591 19 C -0.196 4.196 20 C -0.174 4.174 21 C 0.018 3.982 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.134 4.134 25 C 0.027 3.973 26 N -0.342 5.342 27 C 0.003 3.997 28 C -0.114 4.114 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.140 0.860 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.197 0.803 45 H 0.214 0.786 46 H 0.072 0.928 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -38.805 -2.668 39.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.365 5.365 10 C 0.035 3.965 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.181 4.181 14 C -0.158 4.158 15 C 0.023 3.977 16 N -0.347 5.347 17 C 0.373 3.627 18 O -0.472 6.472 19 C -0.203 4.203 20 C -0.198 4.198 21 C -0.087 4.087 22 C -0.122 4.122 23 C -0.143 4.143 24 C -0.153 4.153 25 C -0.090 4.090 26 N -0.005 5.005 27 C -0.131 4.131 28 C -0.152 4.152 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.254 0.746 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.198 0.802 44 H 0.214 0.786 45 H 0.231 0.769 46 H 0.091 0.909 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.853 -38.442 -2.278 38.701 hybrid contribution -0.009 1.427 0.210 1.442 sum 3.844 -37.015 -2.069 37.271 Atomic orbital electron populations 1.69804 1.06526 1.26079 1.59553 1.25541 0.96393 1.01006 1.03790 0.85239 0.77240 0.79339 0.78119 1.20342 1.22024 1.20684 1.19675 0.91462 0.85627 1.41116 0.90891 1.42575 1.05348 1.01009 1.87596 1.21929 0.95359 0.84140 0.95022 1.23089 0.99796 0.95170 0.97804 1.21874 0.97826 0.91988 0.97293 1.23410 1.00555 0.95634 0.98484 1.23182 0.96970 0.95740 0.99875 1.22358 0.97947 0.78544 0.98854 1.45672 1.38631 1.08043 1.42396 1.17817 0.79446 0.85659 0.79776 1.90752 1.44231 1.75769 1.36477 1.19572 1.03695 0.92564 1.04475 1.21153 1.03775 0.90414 1.04502 1.19030 0.96174 0.96045 0.97460 1.20936 1.00857 0.89055 1.01364 1.21414 0.97053 1.00014 0.95862 1.21281 0.97419 0.96883 0.99748 1.22427 1.02307 0.85275 0.98942 1.41533 1.24845 1.07561 1.26593 1.22518 1.04627 0.81183 1.04756 1.23153 0.95173 0.95143 1.01763 0.94032 0.79376 0.91380 0.90591 0.90536 0.91506 0.93017 0.87565 0.92329 0.89303 0.74626 0.84222 0.82937 0.82203 0.80218 0.78566 0.76907 0.90921 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.25 -14.09 9.97 84.03 0.84 -13.25 16 8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 9 N -0.73 -37.58 5.40 -319.92 -1.73 -39.31 16 10 C 0.14 5.84 4.48 45.63 0.20 6.05 16 11 C -0.12 -3.71 7.59 30.89 0.23 -3.48 16 12 C -0.09 -2.38 1.11 -52.31 -0.06 -2.43 16 13 C -0.14 -4.98 7.64 30.88 0.24 -4.74 16 14 C -0.12 -2.84 7.64 30.88 0.24 -2.61 16 15 C 0.13 2.97 4.24 45.63 0.19 3.16 16 16 N -0.70 -13.41 5.34 -442.70 -2.37 -15.77 16 17 C 0.58 15.22 7.82 86.68 0.68 15.90 16 18 O -0.59 -21.23 16.52 -4.00 -0.07 -21.29 16 19 C -0.20 -4.23 6.12 -20.15 -0.12 -4.35 16 20 C -0.17 -3.98 10.78 22.94 0.25 -3.73 16 21 C 0.02 0.32 6.70 38.90 0.26 0.58 16 22 C -0.10 -1.27 10.11 22.47 0.23 -1.04 16 23 C -0.12 -0.87 10.07 22.32 0.22 -0.65 16 24 C -0.13 -0.61 9.97 22.05 0.22 -0.40 16 25 C 0.03 0.18 10.89 82.96 0.90 1.08 16 26 N -0.34 -4.65 2.92 -345.07 -1.01 -5.66 16 27 C 0.00 0.04 11.09 84.15 0.93 0.97 16 28 C -0.11 -2.38 7.59 30.88 0.23 -2.14 16 29 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 30 H 0.37 20.53 7.92 -92.71 -0.73 19.80 16 31 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 2.60 7.47 -2.38 -0.02 2.58 16 39 H 0.42 4.64 7.62 -92.71 -0.71 3.93 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 43 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 44 H 0.20 -0.20 8.06 -2.91 -0.02 -0.22 16 45 H 0.21 0.95 7.42 -2.91 -0.02 0.93 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.11 1.71 8.12 -2.38 -0.02 1.70 16 Total: -1.00 -80.48 393.45 2.85 -77.62 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.44 Total: 30.12 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 6.16 Total: -15.01 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -4.82 Total: -120.51 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.07 Total: -21.29 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -80.48 2.85 -77.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965335845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.673 kcal (2) G-P(sol) polarization free energy of solvation -80.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds