Wall clock time and date at job start Tue Mar 31 2020 23:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 121.02134 * 2 1 4 4 C 1.47760 * 120.26880 * 359.97438 * 3 2 1 5 5 O 1.21565 * 119.99655 * 353.94942 * 4 3 2 6 6 N 1.34774 * 120.00259 * 173.94334 * 4 3 2 7 7 C 1.46505 * 120.00018 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46842 * 34.99975 * 7 6 4 9 9 C 1.53000 * 109.46982 * 275.00280 * 7 6 4 10 10 C 1.52999 * 109.46964 * 155.00474 * 7 6 4 11 11 C 1.53951 * 113.74071 * 278.73799 * 10 7 6 12 12 N 1.47810 * 86.03467 * 222.08651 * 11 10 7 13 13 C 1.36939 * 134.45154 * 204.64223 * 12 11 10 14 14 H 1.08005 * 119.99788 * 179.87309 * 13 12 11 15 15 C 1.38808 * 120.00292 * 359.86932 * 13 12 11 16 16 N 1.31618 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46886 * 119.99817 * 17 15 13 20 20 H 1.48501 * 109.46991 * 239.99846 * 17 15 13 21 21 C 1.47576 * 91.05102 * 24.55140 * 12 11 10 22 22 C 1.40563 * 119.46479 * 180.02562 * 3 2 1 23 23 N 1.30818 * 121.53957 * 0.02754 * 22 3 2 24 24 C 1.33794 * 121.72198 * 359.97438 * 23 22 3 25 25 C 1.40537 * 120.82997 * 179.97438 * 24 23 22 26 26 C 1.36130 * 119.81264 * 180.27876 * 25 24 23 27 27 C 1.39355 * 121.09479 * 359.40039 * 26 25 24 28 28 C 1.36138 * 120.83037 * 0.64600 * 27 26 25 29 29 C 1.40495 * 121.01838 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47098 * 83.64613 * 1 2 3 31 31 H 1.09000 * 109.47074 * 203.64758 * 1 2 3 32 32 H 1.09002 * 109.46884 * 323.64211 * 1 2 3 33 33 H 0.96995 * 120.00210 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47409 * 59.99540 * 9 7 6 35 35 H 1.08994 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.47057 * 300.00103 * 9 7 6 37 37 H 1.08996 * 112.94938 * 50.33070 * 10 7 6 38 38 H 1.09008 * 113.76638 * 336.35223 * 11 10 7 39 39 H 1.09002 * 113.76962 * 107.74404 * 11 10 7 40 40 H 0.97007 * 119.99485 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.76361 * 221.14887 * 21 12 11 42 42 H 1.08996 * 113.87406 * 89.77059 * 21 12 11 43 43 H 1.08001 * 119.22819 * 180.02562 * 22 3 2 44 44 H 1.07995 * 120.09329 * 359.97438 * 25 24 23 45 45 H 1.07990 * 119.45326 * 179.72200 * 26 25 24 46 46 H 1.07994 * 119.58345 * 180.33487 * 27 26 25 47 47 H 1.08001 * 120.18415 * 179.64698 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5138 2.4875 -0.0006 5 8 0.3036 2.5176 -0.1120 6 7 2.2079 3.6362 0.1226 7 6 1.5041 4.9211 0.1226 8 1 0.5408 4.8076 0.6199 9 6 1.2823 5.3810 -1.3197 10 6 2.3429 5.9620 0.8666 11 6 2.2031 5.8909 2.3981 12 7 2.1565 7.3678 2.3597 13 6 2.4490 8.3601 3.2568 14 1 2.3289 9.3957 2.9747 15 6 2.8998 8.0352 4.5288 16 7 3.0456 6.7731 4.8728 17 14 3.2996 9.3890 5.7523 18 1 3.0528 10.7120 5.1248 19 1 2.4370 9.2422 6.9522 20 1 4.7260 9.2887 6.1529 21 6 1.6705 7.3433 0.9665 22 6 3.6287 1.1534 -0.0005 23 7 4.2824 0.0203 -0.0016 24 6 3.6482 -1.1578 -0.0017 25 6 4.3694 -2.3640 -0.0034 26 6 3.7030 -3.5510 -0.0092 27 6 2.3101 -3.5944 -0.0010 28 6 1.5764 -2.4477 -0.0002 29 6 2.2310 -1.2040 -0.0005 30 1 -0.3633 0.1137 -1.0213 31 1 -0.3633 -0.9414 0.4122 32 1 -0.3633 0.8276 0.6092 33 1 3.1735 3.6122 0.2112 34 1 0.6848 4.6394 -1.8499 35 1 0.7591 6.3372 -1.3197 36 1 2.2456 5.4944 -1.8171 37 1 3.3760 6.0008 0.5216 38 1 1.2737 5.4305 2.7336 39 1 3.0833 5.4909 2.9015 40 1 3.3603 6.5460 5.7619 41 1 2.1264 8.1009 0.3289 42 1 0.5846 7.3108 0.8785 43 1 4.1815 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0050 45 1 4.2630 -4.4744 -0.0150 46 1 1.8065 -4.5497 -0.0004 47 1 0.4973 -2.4935 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970177635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:38 Heat of formation + Delta-G solvation = 73.065155 kcal Electronic energy + Delta-G solvation = -28540.169743 eV Core-core repulsion = 24689.570314 eV Total energy + Delta-G solvation = -3850.599429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32846 -39.71421 -38.15607 -37.10447 -35.23094 -34.40488 -32.34997 -31.43369 -30.59810 -29.97104 -28.02351 -27.52119 -25.09994 -24.47646 -24.16977 -23.79205 -21.66637 -21.35089 -20.51427 -19.40328 -18.23510 -17.97723 -17.16258 -16.69862 -16.02458 -15.86884 -15.28748 -14.89415 -14.73023 -14.61825 -14.36511 -14.22667 -13.93873 -13.77210 -13.48281 -13.20451 -12.97836 -12.93093 -12.48318 -12.28458 -12.17533 -12.06815 -11.99491 -11.77070 -11.66440 -11.30115 -11.29075 -10.90973 -10.71276 -10.41654 -10.35181 -10.07287 -9.87321 -9.75788 -9.49824 -9.36200 -9.11265 -8.83531 -8.79645 -8.47314 -6.86923 -5.76082 -3.08321 -0.00208 0.36999 1.60678 2.36520 3.12900 3.21595 3.39213 3.44429 3.47091 3.85392 3.95439 4.22391 4.41291 4.44179 4.45476 4.54108 4.70224 4.80502 4.92786 5.09135 5.12678 5.20741 5.26803 5.27901 5.43197 5.52553 5.53578 5.61737 5.64693 5.70432 5.75526 5.78000 5.92862 5.93918 6.02492 6.06719 6.18288 6.22216 6.27497 6.35609 6.40550 6.50538 6.57856 6.65315 6.78335 7.23880 7.36376 7.56410 7.58545 7.63232 7.98785 8.26022 9.05353 9.71694 10.60674 11.40970 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002409 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.401262 B =11620.128711 C =12513.132516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.048 3.952 3 C -0.201 4.201 4 C 0.564 3.436 5 O -0.534 6.534 6 N -0.711 5.711 7 C 0.151 3.849 8 H 0.089 0.911 9 C -0.158 4.158 10 C -0.148 4.148 11 C 0.171 3.829 12 N -0.613 5.613 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.131 3.869 22 C 0.170 3.830 23 N -0.482 5.482 24 C 0.144 3.856 25 C -0.099 4.099 26 C -0.093 4.093 27 C -0.124 4.124 28 C -0.086 4.086 29 C -0.114 4.114 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.163 0.837 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.946 -20.407 -14.041 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.039 3.961 3 C -0.206 4.206 4 C 0.351 3.649 5 O -0.413 6.413 6 N -0.361 5.361 7 C 0.047 3.953 8 H 0.107 0.893 9 C -0.217 4.217 10 C -0.168 4.168 11 C 0.045 3.955 12 N -0.339 5.339 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.206 4.206 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.004 3.996 22 C -0.004 4.004 23 N -0.190 5.190 24 C 0.024 3.976 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.142 4.142 28 C -0.104 4.104 29 C -0.117 4.117 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.180 0.820 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.775 -20.315 -13.800 24.570 hybrid contribution -0.143 0.715 0.882 1.144 sum -0.918 -19.599 -12.918 23.491 Atomic orbital electron populations 1.21196 0.88700 1.03973 1.04420 1.20676 0.97315 0.90499 0.87620 1.20851 0.95146 0.94432 1.10174 1.17889 0.86937 0.83352 0.76714 1.90714 1.13443 1.87061 1.50087 1.46028 1.10849 1.05861 1.73336 1.21136 0.96858 0.81244 0.96060 0.89262 1.22132 1.01669 1.01556 0.96302 1.23838 0.99051 0.94938 0.98945 1.22299 0.99531 0.85276 0.88367 1.46006 1.75624 1.02353 1.09939 1.19067 1.37024 0.86710 0.92152 0.90226 1.24788 1.02036 0.96418 0.97315 1.69829 1.51991 1.15146 1.19827 0.86058 0.77687 0.80797 0.81296 1.20467 1.21775 1.21707 1.22480 0.96079 0.93100 0.87918 1.23059 0.90191 0.96627 0.90545 1.67954 1.39489 0.97466 1.14103 1.19015 0.89599 0.92647 0.96377 1.20839 1.00582 0.90092 1.00238 1.20983 0.94528 0.98036 0.97755 1.20939 0.94118 0.98567 1.00611 1.21120 1.00365 0.91025 0.97924 1.18728 0.94017 0.94089 1.04821 0.89526 0.91644 0.87464 0.76641 0.92735 0.91341 0.92684 0.89327 0.95630 0.91026 0.93731 0.93751 0.94757 0.82002 0.84487 0.85162 0.85344 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.49 36.01 0.31 -1.04 16 2 C 0.05 0.57 5.99 -103.47 -0.62 -0.05 16 3 C -0.20 -2.56 5.89 -104.83 -0.62 -3.17 16 4 C 0.56 7.97 7.68 -12.37 -0.09 7.87 16 5 O -0.53 -8.70 13.11 5.31 0.07 -8.63 16 6 N -0.71 -9.40 5.03 -54.77 -0.28 -9.67 16 7 C 0.15 2.24 2.38 -67.93 -0.16 2.08 16 8 H 0.09 1.52 7.42 -51.93 -0.39 1.14 16 9 C -0.16 -2.02 9.31 37.16 0.35 -1.67 16 10 C -0.15 -2.57 3.47 -89.69 -0.31 -2.88 16 11 C 0.17 3.93 7.08 -2.84 -0.02 3.91 16 12 N -0.61 -15.64 3.70 -177.70 -0.66 -16.30 16 13 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 14 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 15 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 16 N -0.92 -27.42 11.39 55.49 0.63 -26.79 16 17 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 C 0.13 2.58 7.64 -2.97 -0.02 2.56 16 22 C 0.17 2.02 10.67 -17.11 -0.18 1.83 16 23 N -0.48 -6.20 10.30 -10.67 -0.11 -6.31 16 24 C 0.14 1.74 6.61 -84.78 -0.56 1.18 16 25 C -0.10 -0.94 9.97 -39.47 -0.39 -1.34 16 26 C -0.09 -0.68 9.94 -39.92 -0.40 -1.08 16 27 C -0.12 -0.89 9.96 -39.92 -0.40 -1.29 16 28 C -0.09 -0.74 9.32 -39.47 -0.37 -1.11 16 29 C -0.11 -1.30 5.74 -106.82 -0.61 -1.91 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.53 6.21 -51.93 -0.32 0.21 16 32 H 0.11 1.37 5.93 -51.93 -0.31 1.06 16 33 H 0.40 4.46 6.66 -40.82 -0.27 4.18 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.03 0.63 7.99 -51.92 -0.41 0.21 16 39 H 0.07 1.83 7.17 -51.93 -0.37 1.45 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.16 1.51 6.42 -52.49 -0.34 1.17 16 44 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 47 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -33.96 381.46 -10.46 -44.43 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.48 Total: 3.17 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -4.36 Total: -2.88 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.41 Total: -59.06 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.96 -10.46 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.490 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds