Wall clock time and date at job start Tue Mar 31 2020 23:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39044 * 121.02134 * 2 1 4 4 C 1.47760 * 120.26880 * 359.97438 * 3 2 1 5 5 O 1.21565 * 119.99655 * 353.94942 * 4 3 2 6 6 N 1.34774 * 120.00259 * 173.94334 * 4 3 2 7 7 C 1.46505 * 120.00018 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46842 * 34.99975 * 7 6 4 9 9 C 1.53000 * 109.46982 * 275.00280 * 7 6 4 10 10 C 1.52999 * 109.46964 * 155.00474 * 7 6 4 11 11 C 1.53951 * 113.74071 * 278.73799 * 10 7 6 12 12 N 1.47810 * 86.03467 * 222.08651 * 11 10 7 13 13 C 1.36939 * 134.45154 * 204.64223 * 12 11 10 14 14 H 1.08005 * 119.99788 * 179.87309 * 13 12 11 15 15 C 1.38808 * 120.00292 * 359.86932 * 13 12 11 16 16 N 1.31618 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00098 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47080 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46886 * 119.99817 * 17 15 13 20 20 H 1.48501 * 109.46991 * 239.99846 * 17 15 13 21 21 C 1.47576 * 91.05102 * 24.55140 * 12 11 10 22 22 C 1.40563 * 119.46479 * 180.02562 * 3 2 1 23 23 N 1.30818 * 121.53957 * 0.02754 * 22 3 2 24 24 C 1.33794 * 121.72198 * 359.97438 * 23 22 3 25 25 C 1.40537 * 120.82997 * 179.97438 * 24 23 22 26 26 C 1.36130 * 119.81264 * 180.27876 * 25 24 23 27 27 C 1.39355 * 121.09479 * 359.40039 * 26 25 24 28 28 C 1.36138 * 120.83037 * 0.64600 * 27 26 25 29 29 C 1.40495 * 121.01838 * 180.02562 * 2 1 3 30 30 H 1.08991 * 109.47098 * 83.64613 * 1 2 3 31 31 H 1.09000 * 109.47074 * 203.64758 * 1 2 3 32 32 H 1.09002 * 109.46884 * 323.64211 * 1 2 3 33 33 H 0.96995 * 120.00210 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47409 * 59.99540 * 9 7 6 35 35 H 1.08994 * 109.47030 * 180.02562 * 9 7 6 36 36 H 1.09000 * 109.47057 * 300.00103 * 9 7 6 37 37 H 1.08996 * 112.94938 * 50.33070 * 10 7 6 38 38 H 1.09008 * 113.76638 * 336.35223 * 11 10 7 39 39 H 1.09002 * 113.76962 * 107.74404 * 11 10 7 40 40 H 0.97007 * 119.99485 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.76361 * 221.14887 * 21 12 11 42 42 H 1.08996 * 113.87406 * 89.77059 * 21 12 11 43 43 H 1.08001 * 119.22819 * 180.02562 * 22 3 2 44 44 H 1.07995 * 120.09329 * 359.97438 * 25 24 23 45 45 H 1.07990 * 119.45326 * 179.72200 * 26 25 24 46 46 H 1.07994 * 119.58345 * 180.33487 * 27 26 25 47 47 H 1.08001 * 120.18415 * 179.64698 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5138 2.4875 -0.0006 5 8 0.3036 2.5176 -0.1120 6 7 2.2079 3.6362 0.1226 7 6 1.5041 4.9211 0.1226 8 1 0.5408 4.8076 0.6199 9 6 1.2823 5.3810 -1.3197 10 6 2.3429 5.9620 0.8666 11 6 2.2031 5.8909 2.3981 12 7 2.1565 7.3678 2.3597 13 6 2.4490 8.3601 3.2568 14 1 2.3289 9.3957 2.9747 15 6 2.8998 8.0352 4.5288 16 7 3.0456 6.7731 4.8728 17 14 3.2996 9.3890 5.7523 18 1 3.0528 10.7120 5.1248 19 1 2.4370 9.2422 6.9522 20 1 4.7260 9.2887 6.1529 21 6 1.6705 7.3433 0.9665 22 6 3.6287 1.1534 -0.0005 23 7 4.2824 0.0203 -0.0016 24 6 3.6482 -1.1578 -0.0017 25 6 4.3694 -2.3640 -0.0034 26 6 3.7030 -3.5510 -0.0092 27 6 2.3101 -3.5944 -0.0010 28 6 1.5764 -2.4477 -0.0002 29 6 2.2310 -1.2040 -0.0005 30 1 -0.3633 0.1137 -1.0213 31 1 -0.3633 -0.9414 0.4122 32 1 -0.3633 0.8276 0.6092 33 1 3.1735 3.6122 0.2112 34 1 0.6848 4.6394 -1.8499 35 1 0.7591 6.3372 -1.3197 36 1 2.2456 5.4944 -1.8171 37 1 3.3760 6.0008 0.5216 38 1 1.2737 5.4305 2.7336 39 1 3.0833 5.4909 2.9015 40 1 3.3603 6.5460 5.7619 41 1 2.1264 8.1009 0.3289 42 1 0.5846 7.3108 0.8785 43 1 4.1815 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0050 45 1 4.2630 -4.4744 -0.0150 46 1 1.8065 -4.5497 -0.0004 47 1 0.4973 -2.4935 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970177635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:37 Heat of formation + Delta-G solvation = 52.033364 kcal Electronic energy + Delta-G solvation = -28541.081750 eV Core-core repulsion = 24689.570314 eV Total energy + Delta-G solvation = -3851.511435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.18095 -40.85595 -39.66519 -37.89677 -36.44090 -35.38724 -34.21650 -32.60810 -31.30096 -31.01621 -29.35938 -28.88222 -26.64257 -25.77231 -25.24508 -24.90061 -23.06155 -22.18189 -21.62021 -20.87609 -19.23506 -18.83088 -18.74978 -18.03776 -17.15282 -16.92641 -16.70736 -16.29173 -15.76238 -15.69146 -15.38375 -15.32113 -15.08985 -14.77736 -14.70587 -14.58494 -14.05974 -13.92812 -13.81558 -13.41522 -13.26814 -13.17272 -13.08178 -12.90522 -12.76450 -12.72450 -12.67272 -12.46576 -12.42082 -11.94890 -11.74666 -11.46256 -11.25283 -11.22332 -10.97659 -10.87702 -10.43191 -10.08322 -9.81688 -9.23307 -8.91855 -7.90770 -5.24205 -0.80488 -0.42059 0.83237 1.44641 1.45791 1.52689 1.56081 2.07311 2.24838 2.46916 3.04374 3.16440 3.30248 3.38715 3.46524 3.57484 3.59117 3.75865 3.80997 3.91303 3.99349 4.20616 4.31583 4.31874 4.42094 4.43963 4.50650 4.58978 4.61337 4.70311 4.75796 4.83750 4.87530 4.93718 4.96633 5.03655 5.05412 5.10282 5.21857 5.26651 5.36113 5.40170 5.43441 5.47576 5.51856 5.57567 5.67494 5.85406 5.93742 6.51119 6.77290 6.91667 7.17425 7.60961 8.56682 9.26138 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002409 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.401262 B =11620.128711 C =12513.132516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.042 3.958 3 C -0.220 4.220 4 C 0.565 3.435 5 O -0.561 6.561 6 N -0.706 5.706 7 C 0.162 3.838 8 H 0.065 0.935 9 C -0.149 4.149 10 C -0.110 4.110 11 C 0.167 3.833 12 N -0.646 5.646 13 C -0.232 4.232 14 H 0.085 0.915 15 C -0.071 4.071 16 N -0.954 5.954 17 Si 0.978 3.022 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.291 1.291 21 C 0.131 3.869 22 C 0.163 3.837 23 N -0.502 5.502 24 C 0.119 3.881 25 C -0.121 4.121 26 C -0.078 4.078 27 C -0.116 4.116 28 C -0.094 4.094 29 C -0.130 4.130 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.409 0.591 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.004 0.996 39 H 0.040 0.960 40 H 0.247 0.753 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.180 0.820 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.165 0.835 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -21.866 -15.535 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.033 3.967 3 C -0.226 4.226 4 C 0.353 3.647 5 O -0.441 6.441 6 N -0.357 5.357 7 C 0.057 3.943 8 H 0.083 0.917 9 C -0.207 4.207 10 C -0.130 4.130 11 C 0.042 3.958 12 N -0.372 5.372 13 C -0.360 4.360 14 H 0.103 0.897 15 C -0.264 4.264 16 N -0.604 5.604 17 Si 0.807 3.193 18 H -0.188 1.188 19 H -0.223 1.223 20 H -0.218 1.218 21 C 0.006 3.994 22 C -0.011 4.011 23 N -0.210 5.210 24 C -0.001 4.001 25 C -0.139 4.139 26 C -0.098 4.098 27 C -0.134 4.134 28 C -0.113 4.113 29 C -0.132 4.132 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.246 0.754 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.196 0.804 44 H 0.161 0.839 45 H 0.182 0.818 46 H 0.182 0.818 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.621 -21.767 -15.336 26.634 hybrid contribution -0.220 1.002 1.321 1.672 sum -0.841 -20.765 -14.016 25.067 Atomic orbital electron populations 1.21139 0.87965 1.04306 1.04275 1.20944 0.97985 0.90788 0.86980 1.20776 0.95580 0.93918 1.12297 1.18095 0.86651 0.83883 0.76033 1.90699 1.14537 1.87476 1.51413 1.45920 1.11361 1.05247 1.73204 1.20872 0.95134 0.81233 0.97094 0.91704 1.22048 1.02782 1.01673 0.94225 1.23458 1.00171 0.94553 0.94829 1.22180 0.97045 0.84312 0.92296 1.46452 1.76138 1.02775 1.11846 1.19488 1.35921 0.87763 0.92853 0.89690 1.25653 1.02813 0.98609 0.99319 1.70029 1.53471 1.17088 1.19787 0.85006 0.76937 0.78802 0.78575 1.18751 1.22264 1.21770 1.22677 0.96808 0.94732 0.85162 1.23281 0.90036 0.97236 0.90542 1.67966 1.40064 0.98077 1.14926 1.19461 0.90429 0.93181 0.97015 1.21066 1.01146 0.90136 1.01557 1.21440 0.95012 0.98456 0.94844 1.21408 0.94122 0.99528 0.98293 1.21424 1.01611 0.90410 0.97839 1.18932 0.93925 0.94887 1.05487 0.89172 0.89048 0.89929 0.75422 0.92954 0.90592 0.90824 0.87690 0.97863 0.94145 0.94430 0.91658 0.93723 0.80368 0.83879 0.81760 0.81794 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 8.49 71.24 0.60 -1.96 16 2 C 0.04 1.01 5.99 -19.12 -0.11 0.90 16 3 C -0.22 -5.79 5.89 -20.00 -0.12 -5.91 16 4 C 0.57 16.44 7.68 86.76 0.67 17.11 16 5 O -0.56 -18.90 13.11 -3.92 -0.05 -18.95 16 6 N -0.71 -18.83 5.03 -445.48 -2.24 -21.07 16 7 C 0.16 4.74 2.38 44.99 0.11 4.84 16 8 H 0.06 2.26 7.42 -2.39 -0.02 2.24 16 9 C -0.15 -3.53 9.31 71.98 0.67 -2.86 16 10 C -0.11 -3.79 3.47 -10.13 -0.04 -3.83 16 11 C 0.17 7.99 7.08 86.44 0.61 8.60 16 12 N -0.65 -33.28 3.70 -716.13 -2.65 -35.94 16 13 C -0.23 -13.15 10.70 84.03 0.90 -12.25 16 14 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 15 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 16 N -0.95 -58.77 11.39 21.65 0.25 -58.52 16 17 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 C 0.13 5.04 7.64 86.49 0.66 5.70 16 22 C 0.16 3.99 10.67 85.41 0.91 4.90 16 23 N -0.50 -13.18 10.30 -187.68 -1.93 -15.11 16 24 C 0.12 2.85 6.61 40.29 0.27 3.12 16 25 C -0.12 -2.15 9.97 22.34 0.22 -1.92 16 26 C -0.08 -0.90 9.94 22.05 0.22 -0.68 16 27 C -0.12 -1.24 9.96 22.05 0.22 -1.02 16 28 C -0.09 -1.42 9.32 22.34 0.21 -1.21 16 29 C -0.13 -2.87 5.74 -21.29 -0.12 -3.00 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.37 6.21 -2.39 -0.01 1.36 16 32 H 0.08 2.20 5.93 -2.39 -0.01 2.19 16 33 H 0.41 9.11 6.66 -92.71 -0.62 8.49 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.70 7.51 -2.39 -0.02 1.68 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.00 0.18 7.99 -2.38 -0.02 0.16 16 39 H 0.04 2.16 7.17 -2.39 -0.02 2.15 16 40 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.05 1.66 8.10 -2.39 -0.02 1.64 16 43 H 0.18 3.41 6.42 -2.91 -0.02 3.39 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.16 0.76 8.06 -2.92 -0.02 0.73 16 46 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 47 H 0.15 1.58 6.30 -2.91 -0.02 1.57 16 Total: -1.00 -76.69 381.46 2.13 -74.56 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.38 Total: 19.74 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.34 Total: 6.85 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -6.58 Total: -130.64 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -76.69 2.13 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970177635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.594 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds