Wall clock time and date at job start Tue Mar 31 2020 23:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39042 * 121.01986 * 2 1 4 4 C 1.47757 * 120.26621 * 0.02562 * 3 2 1 5 5 O 1.21561 * 120.00185 * 318.95060 * 4 3 2 6 6 N 1.34780 * 120.00319 * 138.94874 * 4 3 2 7 7 C 1.47426 * 125.64760 * 5.33550 * 6 4 3 8 8 C 1.55122 * 104.94519 * 204.04282 * 7 6 4 9 9 C 1.55158 * 101.48495 * 323.22577 * 8 7 6 10 10 H 1.09006 * 110.71720 * 276.83069 * 9 8 7 11 11 N 1.46498 * 110.71866 * 153.73359 * 9 8 7 12 12 C 1.46491 * 120.00015 * 302.44241 * 11 9 8 13 13 C 1.36942 * 119.99741 * 122.71321 * 11 9 8 14 14 H 1.07998 * 120.00282 * 324.11462 * 13 11 9 15 15 C 1.38817 * 119.99525 * 144.11667 * 13 11 9 16 16 N 1.31612 * 119.99647 * 160.09149 * 15 13 11 17 17 Si 1.86799 * 120.00081 * 340.08684 * 15 13 11 18 18 H 1.48503 * 109.46783 * 95.42793 * 17 15 13 19 19 H 1.48494 * 109.47240 * 215.42393 * 17 15 13 20 20 H 1.48493 * 109.47253 * 335.43176 * 17 15 13 21 21 C 1.47019 * 125.65019 * 185.38751 * 6 4 3 22 22 C 1.40561 * 119.47175 * 180.29190 * 3 2 1 23 23 N 1.30827 * 121.53134 * 359.44229 * 22 3 2 24 24 C 1.33784 * 121.72137 * 0.54512 * 23 22 3 25 25 C 1.40531 * 120.81673 * 179.74684 * 24 23 22 26 26 C 1.36133 * 119.81322 * 180.02562 * 25 24 23 27 27 C 1.39341 * 121.09159 * 359.96236 * 26 25 24 28 28 C 1.36141 * 120.84293 * 359.97438 * 27 26 25 29 29 C 1.40495 * 121.01801 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.47159 * 91.34385 * 1 2 3 31 31 H 1.09003 * 109.47448 * 211.33574 * 1 2 3 32 32 H 1.08999 * 109.47238 * 331.34261 * 1 2 3 33 33 H 1.09003 * 110.36800 * 323.01150 * 7 6 4 34 34 H 1.09000 * 110.36292 * 85.22055 * 7 6 4 35 35 H 1.09003 * 111.15979 * 205.13533 * 8 7 6 36 36 H 1.09003 * 110.93456 * 81.21808 * 8 7 6 37 37 H 1.09000 * 109.47467 * 84.68868 * 12 11 9 38 38 H 1.09003 * 109.47457 * 204.68923 * 12 11 9 39 39 H 1.09005 * 109.47292 * 324.68604 * 12 11 9 40 40 H 0.97002 * 119.99896 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.88457 * 59.48595 * 21 6 4 42 42 H 1.09004 * 109.87974 * 298.31341 * 21 6 4 43 43 H 1.08007 * 119.23643 * 179.70388 * 22 3 2 44 44 H 1.07997 * 120.09177 * 0.02676 * 25 24 23 45 45 H 1.08002 * 119.45374 * 179.97438 * 26 25 24 46 46 H 1.07997 * 119.58004 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.19032 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5136 2.4874 0.0006 5 8 0.5250 2.6393 -0.6904 6 7 1.9620 3.5012 0.7672 7 6 3.2030 3.4927 1.5631 8 6 2.9663 4.5382 2.6843 9 6 2.1552 5.6237 1.9284 10 1 2.8212 6.2944 1.3854 11 7 1.3074 6.3769 2.8558 12 6 0.3213 5.6752 3.6811 13 6 1.4330 7.7375 2.9471 14 1 2.4054 8.1976 2.8521 15 6 0.3102 8.5251 3.1616 16 7 0.4437 9.7464 3.6336 17 14 -1.3899 7.8518 2.7804 18 1 -1.9912 7.2955 4.0191 19 1 -2.2501 8.9448 2.2603 20 1 -1.2801 6.7796 1.7589 21 6 1.2942 4.7983 0.9491 22 6 3.6285 1.1536 -0.0062 23 7 4.2824 0.0205 -0.0012 24 6 3.6483 -1.1576 -0.0007 25 6 4.3697 -2.3635 -0.0006 26 6 3.7036 -3.5507 -0.0007 27 6 2.3109 -3.5944 0.0000 28 6 1.5766 -2.4480 0.0012 29 6 2.2309 -1.2040 -0.0005 30 1 -0.3634 -0.0241 -1.0274 31 1 -0.3634 -0.8778 0.5344 32 1 -0.3634 0.9018 0.4928 33 1 3.3711 2.5053 1.9931 34 1 4.0517 3.7863 0.9454 35 1 3.9100 4.9411 3.0522 36 1 2.3819 4.1103 3.4988 37 1 0.8037 5.3002 4.5837 38 1 -0.4783 6.3633 3.9558 39 1 -0.0956 4.8401 3.1181 40 1 -0.3407 10.2970 3.7833 41 1 0.2990 4.6475 1.3671 42 1 1.2223 5.3156 -0.0077 43 1 4.1813 2.0815 -0.0111 44 1 5.4496 -2.3485 -0.0005 45 1 4.2639 -4.4741 -0.0010 46 1 1.8074 -4.5498 0.0003 47 1 0.4976 -2.4941 0.0021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971964533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:47 Heat of formation + Delta-G solvation = 40.397590 kcal Electronic energy + Delta-G solvation = -29214.287169 eV Core-core repulsion = 25362.271168 eV Total energy + Delta-G solvation = -3852.016000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25928 -40.95022 -39.13857 -37.91734 -36.74589 -35.60950 -33.88288 -32.34130 -31.42082 -31.30886 -29.72947 -28.92209 -28.12551 -26.15060 -25.03053 -24.65573 -23.74853 -22.09555 -21.25736 -20.78999 -19.28707 -19.05550 -18.85815 -17.88438 -17.68504 -17.17608 -16.83520 -16.21008 -16.01091 -15.70775 -15.44453 -15.29353 -15.00614 -14.93330 -14.65842 -14.58502 -14.35530 -14.17147 -14.01994 -13.87645 -13.71292 -13.41422 -13.25796 -13.07301 -12.81114 -12.69723 -12.57431 -12.45956 -12.41756 -12.27922 -12.05706 -11.63048 -11.53634 -11.31714 -11.22961 -10.70168 -10.53947 -9.88938 -9.74366 -9.24137 -8.86777 -8.22744 -5.62398 -0.81186 -0.41680 0.81879 1.25705 1.39373 1.43145 1.48165 1.73743 2.03663 2.36797 3.00142 3.02316 3.12414 3.24862 3.33924 3.41526 3.52980 3.70808 3.80125 3.80636 3.98734 4.18073 4.21195 4.23057 4.28016 4.33041 4.41440 4.43799 4.45130 4.51511 4.57053 4.59607 4.65760 4.84236 4.89169 4.91365 4.93838 4.94382 5.00756 5.08629 5.15056 5.21951 5.32506 5.36867 5.41695 5.47176 5.84664 5.88885 6.14911 6.37175 6.73847 6.88673 6.94170 7.55770 7.97247 8.96304 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023951 B = 0.002639 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.783566 B =10606.197362 C =11197.481169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.033 3.967 3 C -0.208 4.208 4 C 0.577 3.423 5 O -0.571 6.571 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.137 4.137 9 C 0.166 3.834 10 H 0.087 0.913 11 N -0.609 5.609 12 C 0.106 3.894 13 C -0.256 4.256 14 H 0.057 0.943 15 C -0.020 4.020 16 N -0.946 5.946 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.311 1.311 20 H -0.266 1.266 21 C 0.093 3.907 22 C 0.161 3.839 23 N -0.493 5.493 24 C 0.119 3.881 25 C -0.117 4.117 26 C -0.079 4.079 27 C -0.113 4.113 28 C -0.097 4.097 29 C -0.124 4.124 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.180 0.820 44 H 0.146 0.854 45 H 0.165 0.835 46 H 0.164 0.836 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -31.100 -6.329 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.024 3.976 3 C -0.214 4.214 4 C 0.366 3.634 5 O -0.452 6.452 6 N -0.337 5.337 7 C -0.022 4.022 8 C -0.176 4.176 9 C 0.058 3.942 10 H 0.105 0.895 11 N -0.331 5.331 12 C -0.037 4.037 13 C -0.385 4.385 14 H 0.075 0.925 15 C -0.217 4.217 16 N -0.590 5.590 17 Si 0.774 3.226 18 H -0.203 1.203 19 H -0.240 1.240 20 H -0.191 1.191 21 C -0.031 4.031 22 C -0.012 4.012 23 N -0.202 5.202 24 C -0.001 4.001 25 C -0.135 4.135 26 C -0.099 4.099 27 C -0.131 4.131 28 C -0.115 4.115 29 C -0.126 4.126 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.197 0.803 44 H 0.164 0.836 45 H 0.183 0.817 46 H 0.181 0.819 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.928 -31.031 -6.659 32.484 hybrid contribution -2.000 0.971 -0.155 2.228 sum 4.929 -30.059 -6.814 31.213 Atomic orbital electron populations 1.20958 0.88459 1.03865 1.04108 1.20778 0.97556 0.90816 0.88414 1.20621 0.95981 0.92953 1.11803 1.17981 0.83439 0.83106 0.78868 1.90762 1.28460 1.83149 1.42815 1.48430 1.25218 1.14136 1.45906 1.22764 0.86106 1.00772 0.92588 1.23224 1.01801 0.95330 0.97262 1.21637 0.91313 0.92070 0.89171 0.89452 1.44127 1.43185 1.03044 1.42793 1.21360 0.92193 0.95510 0.94672 1.18762 0.93068 0.81672 1.45019 0.92524 1.26022 1.01367 0.95365 0.98929 1.69937 1.30812 1.11232 1.47037 0.85891 0.81319 0.76857 0.78520 1.20282 1.24013 1.19063 1.22540 0.97330 0.83347 0.99929 1.23361 0.89536 0.97383 0.90969 1.68009 1.39688 0.97864 1.14596 1.19445 0.90265 0.93230 0.97183 1.21066 1.01210 0.89976 1.01252 1.21442 0.94931 0.98554 0.94943 1.21403 0.94201 0.99461 0.98031 1.21387 1.01544 0.90417 0.98176 1.18857 0.93986 0.94529 1.05251 0.89139 0.87942 0.92250 0.89122 0.88199 0.88109 0.91060 0.94474 0.95267 0.93422 0.92743 0.93126 0.92688 0.80302 0.83631 0.81740 0.81894 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.54 71.23 0.61 -1.82 16 2 C 0.03 0.77 5.98 -19.12 -0.11 0.65 16 3 C -0.21 -5.41 5.40 -20.00 -0.11 -5.52 16 4 C 0.58 18.03 6.82 86.76 0.59 18.63 16 5 O -0.57 -21.78 15.48 -3.91 -0.06 -21.84 16 6 N -0.60 -17.85 3.33 -814.86 -2.71 -20.56 16 7 C 0.10 2.21 5.24 86.93 0.46 2.66 16 8 C -0.14 -3.65 6.66 32.06 0.21 -3.44 16 9 C 0.17 5.92 3.44 46.18 0.16 6.08 16 10 H 0.09 3.16 7.95 -2.38 -0.02 3.14 16 11 N -0.61 -27.27 2.54 -696.15 -1.77 -29.04 16 12 C 0.11 4.41 8.17 127.77 1.04 5.45 16 13 C -0.26 -13.93 9.91 84.03 0.83 -13.10 16 14 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 15 C -0.02 -1.16 5.33 84.86 0.45 -0.70 16 16 N -0.95 -58.24 13.97 21.65 0.30 -57.94 16 17 Si 0.94 46.72 24.78 68.60 1.70 48.42 16 18 H -0.28 -12.97 6.70 99.48 0.67 -12.30 16 19 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 20 H -0.27 -12.86 7.09 99.48 0.71 -12.15 16 21 C 0.09 3.32 6.46 86.73 0.56 3.88 16 22 C 0.16 3.69 9.09 85.41 0.78 4.46 16 23 N -0.49 -11.67 10.30 -187.68 -1.93 -13.60 16 24 C 0.12 2.57 6.61 40.29 0.27 2.83 16 25 C -0.12 -1.79 9.97 22.34 0.22 -1.57 16 26 C -0.08 -0.76 9.94 22.05 0.22 -0.54 16 27 C -0.11 -1.03 9.96 22.05 0.22 -0.81 16 28 C -0.10 -1.30 9.31 22.34 0.21 -1.10 16 29 C -0.12 -2.53 5.74 -21.28 -0.12 -2.65 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.10 1.41 6.58 -2.39 -0.02 1.40 16 32 H 0.06 1.53 6.52 -2.39 -0.02 1.51 16 33 H 0.09 1.76 6.74 -2.39 -0.02 1.74 16 34 H 0.10 1.73 7.33 -2.39 -0.02 1.71 16 35 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.07 2.00 7.06 -2.39 -0.02 1.98 16 37 H 0.04 1.40 7.88 -2.39 -0.02 1.39 16 38 H 0.03 1.33 3.10 -2.39 -0.01 1.32 16 39 H 0.05 1.80 6.22 -2.38 -0.01 1.78 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.05 2.01 6.06 -2.39 -0.01 2.00 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.18 3.34 5.92 -2.91 -0.02 3.32 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.17 0.45 8.06 -2.91 -0.02 0.43 16 46 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.15 1.37 6.47 -2.91 -0.02 1.36 16 Total: -1.00 -74.04 366.66 2.98 -71.06 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.96 Total: 10.10 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 6.48 Total: 13.39 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -6.11 Total: -121.14 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.70 Total: 48.42 kcal Total: -74.04 2.98 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971964533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.460 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds