Wall clock time and date at job start Tue Mar 31 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99897 * 2 1 4 4 H 1.48500 * 109.47131 * 240.00030 * 3 2 1 5 5 H 1.48503 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47124 * 120.00316 * 3 2 1 7 7 C 1.38812 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99683 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00049 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99724 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47211 * 325.00127 * 10 9 7 12 12 C 1.53001 * 109.46694 * 85.00162 * 10 9 7 13 13 C 1.53006 * 109.46870 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47076 * 300.00164 * 13 12 10 15 15 C 1.53002 * 109.47098 * 59.99945 * 14 13 12 16 16 H 1.09002 * 109.46772 * 180.02562 * 15 14 13 17 17 N 1.46503 * 109.47036 * 60.00091 * 15 14 13 18 18 C 1.34775 * 119.99947 * 84.99776 * 17 15 14 19 19 O 1.21584 * 120.00122 * 0.02562 * 18 17 15 20 20 C 1.47553 * 119.99844 * 179.97438 * 18 17 15 21 21 C 1.38700 * 120.38603 * 354.05809 * 20 18 17 22 22 C 1.38968 * 120.53600 * 180.02562 * 21 20 18 23 23 C 1.36211 * 121.23809 * 359.97438 * 22 21 20 24 24 C 1.40709 * 120.19763 * 0.25404 * 23 22 21 25 25 N 1.33692 * 120.93461 * 180.24816 * 24 23 22 26 26 C 1.31067 * 121.34335 * 179.78901 * 25 24 23 27 27 C 1.39342 * 121.70014 * 359.73550 * 26 25 24 28 28 C 1.36668 * 119.87255 * 359.97438 * 27 26 25 29 29 C 1.40466 * 118.17344 * 0.02562 * 28 27 26 30 30 C 1.52997 * 109.47260 * 299.99805 * 15 14 13 31 31 H 0.97006 * 120.00136 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00240 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47320 * 60.00031 * 12 10 9 34 34 H 1.08992 * 109.47546 * 299.99874 * 12 10 9 35 35 H 1.08999 * 109.46981 * 180.02562 * 13 12 10 36 36 H 1.09000 * 109.46936 * 60.00026 * 13 12 10 37 37 H 1.09000 * 109.47125 * 299.99746 * 14 13 12 38 38 H 1.08997 * 109.47105 * 180.02562 * 14 13 12 39 39 H 0.96997 * 119.99538 * 264.99453 * 17 15 14 40 40 H 1.08003 * 119.72878 * 359.97438 * 21 20 18 41 41 H 1.07996 * 119.38125 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.89662 * 179.97438 * 23 22 21 43 43 H 1.07998 * 119.14615 * 179.75298 * 26 25 24 44 44 H 1.08007 * 120.05972 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.91383 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.47505 * 179.97438 * 30 15 14 47 47 H 1.09000 * 109.47541 * 300.00447 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9683 -3.5503 -0.5917 12 6 2.4229 -4.0362 1.4349 13 6 3.1874 -5.3616 1.4338 14 6 2.3093 -6.4564 0.8246 15 6 1.9443 -6.0769 -0.6120 16 1 1.3183 -6.8567 -1.0459 17 7 3.1678 -5.9343 -1.4052 18 6 3.7334 -7.0183 -1.9723 19 8 3.2281 -8.1144 -1.8259 20 6 4.9653 -6.8746 -2.7716 21 6 5.4798 -5.6165 -3.0476 22 6 6.6395 -5.4775 -3.8006 23 6 7.3010 -6.5647 -4.2861 24 6 6.8131 -7.8604 -4.0350 25 7 7.4533 -8.9380 -4.5002 26 6 7.0082 -10.1486 -4.2677 27 6 5.8526 -10.3733 -3.5222 28 6 5.1544 -9.3145 -3.0131 29 6 5.6362 -8.0194 -3.2655 30 6 1.1799 -4.7516 -0.6110 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 1.5127 -4.1427 2.0250 34 1 3.0481 -3.2561 1.8691 35 1 3.4470 -5.6321 2.4573 36 1 4.0977 -5.2555 0.8437 37 1 1.3990 -6.5625 1.4147 38 1 2.8537 -7.4006 0.8242 39 1 3.5707 -5.0598 -1.5223 40 1 4.9745 -4.7377 -2.6750 41 1 7.0235 -4.4890 -4.0047 42 1 8.2003 -6.4316 -4.8692 43 1 7.5512 -10.9939 -4.6640 44 1 5.5094 -11.3823 -3.3471 45 1 4.2564 -9.4693 -2.4333 46 1 0.9203 -4.4810 -1.6344 47 1 0.2696 -4.8576 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981254821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:14 Heat of formation + Delta-G solvation = 26.471835 kcal Electronic energy + Delta-G solvation = -29038.042534 eV Core-core repulsion = 25185.422667 eV Total energy + Delta-G solvation = -3852.619867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30669 -39.96602 -38.08911 -37.12497 -34.62851 -33.51112 -33.23453 -31.23707 -30.80310 -30.75254 -29.21926 -27.90796 -24.94999 -23.93169 -23.70253 -23.48413 -22.09785 -21.16597 -20.93456 -19.09851 -18.42768 -17.83898 -17.23221 -16.94877 -16.37246 -15.75618 -15.53200 -15.07504 -15.01324 -14.57400 -14.47030 -14.38673 -14.01723 -13.74512 -13.56970 -13.35522 -13.12532 -13.01881 -12.54687 -12.35416 -12.15765 -11.93352 -11.87305 -11.80071 -11.58129 -11.05429 -10.91981 -10.84394 -10.69438 -10.44835 -10.31777 -10.26467 -10.23772 -9.81077 -9.58592 -9.38564 -9.09276 -9.06705 -8.92079 -8.50903 -7.03148 -5.82873 -3.12223 -0.09591 0.56458 1.53466 2.43647 3.03855 3.08361 3.38713 3.43572 3.44759 3.91306 4.00734 4.36215 4.47042 4.51888 4.55291 4.65264 4.81386 4.87675 4.95307 5.03329 5.09089 5.11887 5.19414 5.43031 5.51186 5.53573 5.57339 5.63029 5.67981 5.72230 5.80621 5.88509 5.92079 5.99655 6.00177 6.04383 6.08986 6.16353 6.23559 6.34507 6.43462 6.49951 6.52224 6.60831 6.65364 6.87300 7.02065 7.44574 7.62034 7.64280 8.11238 8.35327 9.46602 10.03623 10.38002 11.39497 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.002778 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.305171 B =10075.065371 C =11387.648298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.087 0.913 17 N -0.707 5.707 18 C 0.562 3.438 19 O -0.541 6.541 20 C -0.112 4.112 21 C -0.072 4.072 22 C -0.109 4.109 23 C -0.068 4.068 24 C 0.117 3.883 25 N -0.479 5.479 26 C 0.130 3.870 27 C -0.182 4.182 28 C -0.059 4.059 29 C -0.066 4.066 30 C -0.135 4.135 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.158 0.842 44 H 0.137 0.863 45 H 0.179 0.821 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 -18.435 -5.888 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.105 0.895 17 N -0.358 5.358 18 C 0.349 3.651 19 O -0.421 6.421 20 C -0.116 4.116 21 C -0.091 4.091 22 C -0.128 4.128 23 C -0.087 4.087 24 C -0.004 4.004 25 N -0.187 5.187 26 C -0.042 4.042 27 C -0.202 4.202 28 C -0.085 4.085 29 C -0.069 4.069 30 C -0.173 4.173 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.175 0.825 44 H 0.155 0.845 45 H 0.196 0.804 46 H 0.089 0.911 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.156 -18.767 -6.268 23.222 hybrid contribution -0.340 1.310 0.492 1.440 sum 11.816 -17.457 -5.776 21.857 Atomic orbital electron populations 1.69647 1.05111 1.25841 1.57367 1.24742 0.95496 0.97691 1.02882 0.86296 0.78562 0.83647 0.77835 1.21256 1.21695 1.21278 1.19156 0.90878 0.84099 1.43109 0.91296 1.42409 1.05789 0.99639 1.88613 1.20137 0.93792 0.86033 0.92943 0.94274 1.22295 0.99842 0.95164 1.00462 1.21515 0.98441 0.95655 0.99825 1.21900 1.00680 0.98625 0.95366 1.21025 0.84857 0.98616 0.90847 0.89501 1.46167 1.27982 1.10184 1.51515 1.18072 0.83508 0.84567 0.78922 1.90530 1.63903 1.25358 1.62310 1.19920 0.96653 0.93419 1.01597 1.21556 0.95342 0.96503 0.95676 1.20881 0.95017 0.99543 0.97408 1.21010 0.99651 0.89915 0.98137 1.18859 0.92090 0.93427 0.96016 1.68050 1.31335 0.98665 1.20645 1.22999 0.93307 0.94461 0.93457 1.22054 0.97097 1.00712 1.00294 1.22673 0.99973 0.90661 0.95146 1.18628 0.95769 0.93946 0.98550 1.22149 0.99363 0.93464 1.02364 0.93411 0.78211 0.92479 0.92028 0.92770 0.92690 0.90978 0.92026 0.75892 0.84600 0.84275 0.84316 0.82459 0.84473 0.80422 0.91130 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.86 5.12 -53.42 -0.27 -17.14 16 10 C 0.18 3.19 2.60 -67.93 -0.18 3.02 16 11 H 0.04 0.68 6.45 -51.93 -0.33 0.35 16 12 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 13 C -0.12 -1.55 5.77 -26.73 -0.15 -1.70 16 14 C -0.13 -1.60 5.60 -26.73 -0.15 -1.75 16 15 C 0.15 1.96 2.78 -67.93 -0.19 1.77 16 16 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 17 N -0.71 -8.75 4.18 -54.84 -0.23 -8.98 16 18 C 0.56 7.43 7.69 -12.46 -0.10 7.34 16 19 O -0.54 -8.15 13.07 5.29 0.07 -8.08 16 20 C -0.11 -1.36 5.90 -104.65 -0.62 -1.98 16 21 C -0.07 -0.73 9.51 -39.14 -0.37 -1.10 16 22 C -0.11 -0.98 9.92 -40.04 -0.40 -1.37 16 23 C -0.07 -0.68 9.96 -39.38 -0.39 -1.08 16 24 C 0.12 1.43 6.60 -84.87 -0.56 0.87 16 25 N -0.48 -5.67 10.34 -10.99 -0.11 -5.78 16 26 C 0.13 1.23 11.15 -17.47 -0.19 1.04 16 27 C -0.18 -1.71 10.03 -39.74 -0.40 -2.11 16 28 C -0.06 -0.71 9.29 -39.31 -0.37 -1.07 16 29 C -0.07 -0.84 5.76 -106.54 -0.61 -1.45 16 30 C -0.13 -2.00 5.07 -26.73 -0.14 -2.13 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.38 9.65 7.80 -40.82 -0.32 9.33 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 7.60 -51.93 -0.39 0.33 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 4.69 4.94 -40.82 -0.20 4.49 16 40 H 0.14 1.18 6.43 -52.48 -0.34 0.84 16 41 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.18 2.26 4.96 -52.50 -0.26 2.00 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -31.43 376.34 -10.82 -42.25 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.44 Total: 13.00 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -5.21 Total: -11.02 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.11 Total: -58.43 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.43 -10.82 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981254821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.722 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds