Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47014 * 299.99738 * 3 2 1 6 6 H 1.48505 * 109.47058 * 59.99291 * 3 2 1 7 7 C 1.38809 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46792 * 34.99993 * 10 9 7 12 12 C 1.53002 * 109.46958 * 274.99917 * 10 9 7 13 13 C 1.53003 * 109.46981 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46611 * 60.00316 * 13 12 10 15 15 C 1.53002 * 109.47190 * 299.99556 * 14 13 12 16 16 H 1.08999 * 109.47431 * 300.00705 * 15 14 13 17 17 N 1.46503 * 109.47130 * 180.02562 * 15 14 13 18 18 C 1.34769 * 119.99959 * 84.99868 * 17 15 14 19 19 O 1.21590 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.47553 * 119.99856 * 179.97438 * 18 17 15 21 21 C 1.38693 * 120.38758 * 354.06003 * 20 18 17 22 22 C 1.38969 * 120.53426 * 180.02562 * 21 20 18 23 23 C 1.36211 * 121.24178 * 359.97438 * 22 21 20 24 24 C 1.40718 * 120.19961 * 0.27356 * 23 22 21 25 25 N 1.33687 * 120.95407 * 179.72312 * 24 23 22 26 26 C 1.31068 * 121.34094 * 179.97438 * 25 24 23 27 27 C 1.39331 * 121.71144 * 0.02562 * 26 25 24 28 28 C 1.36683 * 119.86542 * 359.50046 * 27 26 25 29 29 C 1.40474 * 118.16226 * 0.70856 * 28 27 26 30 30 C 1.52993 * 109.47206 * 154.99957 * 10 9 7 31 31 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99340 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46859 * 60.00247 * 12 10 9 34 34 H 1.08990 * 109.47271 * 300.00248 * 12 10 9 35 35 H 1.08996 * 109.47255 * 300.00678 * 13 12 10 36 36 H 1.09000 * 109.46915 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46492 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47509 * 60.00213 * 14 13 12 39 39 H 0.97003 * 119.99436 * 265.00056 * 17 15 14 40 40 H 1.07998 * 119.73147 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.38194 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.90192 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.14126 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.06523 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.91391 * 179.97438 * 28 27 26 46 46 H 1.09006 * 109.47074 * 59.99941 * 30 10 9 47 47 H 1.09002 * 109.47129 * 300.00346 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5506 0.5900 12 6 2.4218 -4.0356 -1.4365 13 6 3.1873 -5.3604 -1.4365 14 6 2.3105 -6.4560 -0.8266 15 6 1.9466 -6.0772 0.6104 16 1 2.8573 -5.9705 1.1998 17 7 1.1076 -7.1265 1.1945 18 6 1.6781 -8.2081 1.7611 19 8 2.8891 -8.3128 1.7879 20 6 0.8330 -9.2646 2.3498 21 6 -0.5412 -9.0976 2.4353 22 6 -1.3400 -10.0905 2.9898 23 6 -0.8013 -11.2491 3.4619 24 6 0.5887 -11.4599 3.4006 25 7 1.1340 -12.5889 3.8645 26 6 2.4275 -12.7935 3.8108 27 6 3.2966 -11.8481 3.2702 28 6 2.8019 -10.6764 2.7697 29 6 1.4154 -10.4608 2.8344 30 6 1.1808 -4.7521 0.6101 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 3.0467 -3.2553 -1.8708 34 1 1.5112 -4.1418 -2.0259 35 1 4.0979 -5.2538 -0.8471 36 1 3.4469 -5.6300 -2.4602 37 1 2.8557 -7.3999 -0.8270 38 1 1.3998 -6.5626 -1.4160 39 1 0.1414 -7.0427 1.1734 40 1 -0.9942 -8.1886 2.0681 41 1 -2.4080 -9.9407 3.0474 42 1 -1.4424 -12.0065 3.8881 43 1 2.8301 -13.7188 4.1956 44 1 4.3583 -12.0441 3.2397 45 1 3.4603 -9.9317 2.3471 46 1 0.2700 -4.8584 0.0207 47 1 0.9215 -4.4822 1.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981254822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = 23.707846 kcal Electronic energy + Delta-G solvation = -28386.551850 eV Core-core repulsion = 24533.812128 eV Total energy + Delta-G solvation = -3852.739722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.36829 -39.87482 -38.08178 -37.20855 -34.86842 -33.59312 -33.45557 -31.19392 -30.88941 -30.81320 -29.06603 -27.78841 -25.01852 -23.97070 -23.75235 -23.52485 -21.99723 -21.31412 -20.58726 -19.54512 -18.51159 -17.90328 -17.17572 -17.04734 -16.39533 -16.15820 -15.30919 -15.18773 -15.03838 -14.50560 -14.42952 -14.32096 -14.02824 -13.82348 -13.59810 -13.43186 -13.28723 -13.04484 -12.69441 -12.45119 -12.21872 -12.15192 -11.99798 -11.69629 -11.03269 -11.00340 -10.91992 -10.77295 -10.76133 -10.46413 -10.40135 -10.26230 -10.17169 -9.87658 -9.69464 -9.40451 -9.15621 -9.14388 -8.90754 -8.59753 -6.99443 -5.79997 -3.08664 -0.18362 0.48177 1.45983 2.34595 2.92857 2.99270 3.41295 3.47528 3.49304 3.83280 3.93105 4.26301 4.35611 4.47069 4.54877 4.56262 4.74892 4.78682 4.91205 4.99695 5.02179 5.11616 5.26742 5.42907 5.45358 5.49413 5.56063 5.62352 5.63265 5.66884 5.82149 5.83094 5.88797 5.92779 5.97239 6.02104 6.09356 6.18170 6.26455 6.32625 6.43350 6.47786 6.49473 6.57264 6.68297 6.92609 7.08418 7.34258 7.57294 7.68691 8.03042 8.38739 9.50100 10.06913 10.41542 11.42771 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.002150 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.545231 B =13018.319131 C =13606.615595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.148 3.852 16 H 0.091 0.909 17 N -0.713 5.713 18 C 0.561 3.439 19 O -0.535 6.535 20 C -0.110 4.110 21 C -0.075 4.075 22 C -0.111 4.111 23 C -0.068 4.068 24 C 0.118 3.882 25 N -0.480 5.480 26 C 0.132 3.868 27 C -0.180 4.180 28 C -0.060 4.060 29 C -0.067 4.067 30 C -0.130 4.130 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.399 0.601 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.139 0.861 45 H 0.180 0.820 46 H 0.065 0.935 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -25.539 4.686 25.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.044 3.956 16 H 0.109 0.891 17 N -0.363 5.363 18 C 0.348 3.652 19 O -0.414 6.414 20 C -0.114 4.114 21 C -0.094 4.094 22 C -0.131 4.131 23 C -0.086 4.086 24 C -0.004 4.004 25 N -0.188 5.188 26 C -0.040 4.040 27 C -0.200 4.200 28 C -0.085 4.085 29 C -0.070 4.070 30 C -0.169 4.169 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.235 0.765 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.176 0.824 44 H 0.156 0.844 45 H 0.196 0.804 46 H 0.084 0.916 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.376 -25.998 5.061 26.489 hybrid contribution 0.104 1.571 -0.401 1.625 sum 0.480 -24.427 4.660 24.872 Atomic orbital electron populations 1.69665 1.05101 1.25536 1.57889 1.24739 0.95527 0.97704 1.03071 0.86134 0.78840 0.84162 0.77173 1.20528 1.21895 1.21891 1.19286 0.91050 0.84026 1.42400 0.91082 1.42408 1.05746 0.99710 1.88609 1.20090 0.94094 0.85500 0.92986 0.93319 1.22297 0.99743 0.95255 1.00467 1.21485 0.98504 0.95326 0.99991 1.21885 1.00209 0.98903 0.95247 1.21119 0.94499 0.85878 0.94096 0.89136 1.46118 1.10696 1.20892 1.58575 1.18080 0.87568 0.81680 0.77828 1.90558 1.14229 1.77556 1.59069 1.19937 0.93846 0.94856 1.02790 1.21488 0.92314 0.99179 0.96369 1.20849 1.00726 0.93165 0.98314 1.21014 0.92617 0.97593 0.97414 1.18862 0.94184 0.90258 0.97049 1.68055 1.13856 1.20155 1.16696 1.23019 0.88715 0.98648 0.93654 1.22077 1.01803 0.95255 1.00866 1.22700 0.94867 0.97550 0.93353 1.18638 0.94758 0.94112 0.99443 1.22113 0.99389 0.93269 1.02118 0.93585 0.78339 0.91844 0.92637 0.92130 0.92452 0.92125 0.92001 0.76531 0.84746 0.84375 0.84305 0.82370 0.84356 0.80368 0.91634 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.43 5.12 -53.43 -0.27 -17.70 16 10 C 0.18 3.44 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 14 C -0.12 -1.58 5.49 -26.73 -0.15 -1.73 16 15 C 0.15 1.95 2.46 -67.91 -0.17 1.78 16 16 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 17 N -0.71 -7.95 5.03 -54.82 -0.28 -8.22 16 18 C 0.56 7.01 7.69 -12.47 -0.10 6.91 16 19 O -0.53 -8.01 13.07 5.29 0.07 -7.94 16 20 C -0.11 -1.22 5.90 -104.66 -0.62 -1.83 16 21 C -0.07 -0.62 9.51 -39.14 -0.37 -0.99 16 22 C -0.11 -0.81 9.92 -40.04 -0.40 -1.20 16 23 C -0.07 -0.59 9.96 -39.37 -0.39 -0.99 16 24 C 0.12 1.33 6.60 -84.88 -0.56 0.76 16 25 N -0.48 -5.34 10.34 -10.99 -0.11 -5.45 16 26 C 0.13 1.18 11.15 -17.47 -0.19 0.98 16 27 C -0.18 -1.62 10.03 -39.74 -0.40 -2.02 16 28 C -0.06 -0.68 9.29 -39.30 -0.37 -1.05 16 29 C -0.07 -0.79 5.76 -106.53 -0.61 -1.40 16 30 C -0.13 -1.95 4.86 -26.71 -0.13 -2.08 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.38 9.76 7.80 -40.82 -0.32 9.45 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.46 6.67 -40.82 -0.27 3.18 16 40 H 0.13 0.78 6.43 -52.49 -0.34 0.44 16 41 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.18 2.22 4.96 -52.50 -0.26 1.96 16 46 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -32.64 380.77 -10.97 -43.61 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.62 Total: 10.66 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -5.19 Total: -10.86 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.06 Total: -58.33 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.07 Total: -7.94 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.64 -10.97 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981254822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.317 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds