Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00275 * 2 1 4 4 H 1.48494 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47014 * 299.99738 * 3 2 1 6 6 H 1.48505 * 109.47058 * 59.99291 * 3 2 1 7 7 C 1.38809 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00080 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00072 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.46792 * 34.99993 * 10 9 7 12 12 C 1.53002 * 109.46958 * 274.99917 * 10 9 7 13 13 C 1.53003 * 109.46981 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.46611 * 60.00316 * 13 12 10 15 15 C 1.53002 * 109.47190 * 299.99556 * 14 13 12 16 16 H 1.08999 * 109.47431 * 300.00705 * 15 14 13 17 17 N 1.46503 * 109.47130 * 180.02562 * 15 14 13 18 18 C 1.34769 * 119.99959 * 84.99868 * 17 15 14 19 19 O 1.21590 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.47553 * 119.99856 * 179.97438 * 18 17 15 21 21 C 1.38693 * 120.38758 * 354.06003 * 20 18 17 22 22 C 1.38969 * 120.53426 * 180.02562 * 21 20 18 23 23 C 1.36211 * 121.24178 * 359.97438 * 22 21 20 24 24 C 1.40718 * 120.19961 * 0.27356 * 23 22 21 25 25 N 1.33687 * 120.95407 * 179.72312 * 24 23 22 26 26 C 1.31068 * 121.34094 * 179.97438 * 25 24 23 27 27 C 1.39331 * 121.71144 * 0.02562 * 26 25 24 28 28 C 1.36683 * 119.86542 * 359.50046 * 27 26 25 29 29 C 1.40474 * 118.16226 * 0.70856 * 28 27 26 30 30 C 1.52993 * 109.47206 * 154.99957 * 10 9 7 31 31 H 0.97001 * 119.99835 * 0.02562 * 1 2 3 32 32 H 0.96999 * 119.99340 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.46859 * 60.00247 * 12 10 9 34 34 H 1.08990 * 109.47271 * 300.00248 * 12 10 9 35 35 H 1.08996 * 109.47255 * 300.00678 * 13 12 10 36 36 H 1.09000 * 109.46915 * 180.02562 * 13 12 10 37 37 H 1.09007 * 109.46492 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47509 * 60.00213 * 14 13 12 39 39 H 0.97003 * 119.99436 * 265.00056 * 17 15 14 40 40 H 1.07998 * 119.73147 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.38194 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.90192 * 180.02562 * 23 22 21 43 43 H 1.08005 * 119.14126 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.06523 * 179.97438 * 27 26 25 45 45 H 1.08003 * 120.91391 * 179.97438 * 28 27 26 46 46 H 1.09006 * 109.47074 * 59.99941 * 30 10 9 47 47 H 1.09002 * 109.47129 * 300.00346 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9686 -3.5506 0.5900 12 6 2.4218 -4.0356 -1.4365 13 6 3.1873 -5.3604 -1.4365 14 6 2.3105 -6.4560 -0.8266 15 6 1.9466 -6.0772 0.6104 16 1 2.8573 -5.9705 1.1998 17 7 1.1076 -7.1265 1.1945 18 6 1.6781 -8.2081 1.7611 19 8 2.8891 -8.3128 1.7879 20 6 0.8330 -9.2646 2.3498 21 6 -0.5412 -9.0976 2.4353 22 6 -1.3400 -10.0905 2.9898 23 6 -0.8013 -11.2491 3.4619 24 6 0.5887 -11.4599 3.4006 25 7 1.1340 -12.5889 3.8645 26 6 2.4275 -12.7935 3.8108 27 6 3.2966 -11.8481 3.2702 28 6 2.8019 -10.6764 2.7697 29 6 1.4154 -10.4608 2.8344 30 6 1.1808 -4.7521 0.6101 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 3.0467 -3.2553 -1.8708 34 1 1.5112 -4.1418 -2.0259 35 1 4.0979 -5.2538 -0.8471 36 1 3.4469 -5.6300 -2.4602 37 1 2.8557 -7.3999 -0.8270 38 1 1.3998 -6.5626 -1.4160 39 1 0.1414 -7.0427 1.1734 40 1 -0.9942 -8.1886 2.0681 41 1 -2.4080 -9.9407 3.0474 42 1 -1.4424 -12.0065 3.8881 43 1 2.8301 -13.7188 4.1956 44 1 4.3583 -12.0441 3.2397 45 1 3.4603 -9.9317 2.3471 46 1 0.2700 -4.8584 0.0207 47 1 0.9215 -4.4822 1.6339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981254822.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = 3.574192 kcal Electronic energy + Delta-G solvation = -28387.424911 eV Core-core repulsion = 24533.812128 eV Total energy + Delta-G solvation = -3853.612783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.13609 -40.84613 -39.29937 -37.92423 -36.31709 -34.92921 -34.33235 -32.95569 -31.72754 -31.54825 -30.26189 -29.28741 -25.84551 -25.62263 -24.65328 -24.38541 -23.21026 -22.49282 -21.62258 -20.84312 -19.41406 -19.05406 -18.54468 -17.91017 -17.35089 -17.12538 -16.54013 -16.24213 -16.03886 -15.73956 -15.45686 -15.30469 -15.27176 -14.98643 -14.90588 -14.71095 -14.28539 -14.11084 -13.82943 -13.60583 -13.37567 -13.07701 -12.91495 -12.85679 -12.72382 -12.35047 -12.24797 -12.13236 -12.02531 -11.97586 -11.66894 -11.52147 -11.50411 -11.39086 -11.13695 -10.88077 -10.27666 -10.16760 -9.83088 -9.33062 -8.99365 -7.94033 -5.21438 -0.90386 -0.20529 0.66861 1.47200 1.47781 1.57354 1.63764 1.98333 2.16528 2.56528 3.09593 3.30534 3.39463 3.47777 3.62086 3.75217 3.80498 3.85394 3.86326 4.02774 4.06502 4.16064 4.24596 4.31126 4.39351 4.43607 4.47700 4.53040 4.57843 4.66548 4.76561 4.77889 4.78502 4.97660 5.03523 5.08058 5.16504 5.19302 5.22590 5.24119 5.31561 5.35475 5.46648 5.50750 5.53822 5.58200 5.66126 5.78641 6.29171 6.45502 6.85265 7.12339 7.35563 8.11352 8.34848 9.29467 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.002150 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.545231 B =13018.319131 C =13606.615595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.072 0.928 17 N -0.703 5.703 18 C 0.560 3.440 19 O -0.566 6.566 20 C -0.137 4.137 21 C -0.060 4.060 22 C -0.104 4.104 23 C -0.071 4.071 24 C 0.094 3.906 25 N -0.497 5.497 26 C 0.127 3.873 27 C -0.172 4.172 28 C -0.088 4.088 29 C -0.085 4.085 30 C -0.115 4.115 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.156 0.844 43 H 0.193 0.807 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.078 0.922 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 -27.191 4.779 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.090 0.910 17 N -0.354 5.354 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.141 4.141 21 C -0.079 4.079 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.027 4.027 25 N -0.206 5.206 26 C -0.045 4.045 27 C -0.192 4.192 28 C -0.113 4.113 29 C -0.088 4.088 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.251 0.749 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.174 0.826 43 H 0.210 0.790 44 H 0.182 0.818 45 H 0.180 0.820 46 H 0.096 0.904 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.268 -27.688 5.151 28.164 hybrid contribution 0.328 1.976 -0.394 2.042 sum 0.060 -25.712 4.756 26.148 Atomic orbital electron populations 1.69800 1.06389 1.25836 1.59847 1.25480 0.96376 1.00805 1.04121 0.85161 0.78250 0.80301 0.76612 1.19303 1.22125 1.22163 1.19604 0.91291 0.85290 1.40433 0.91011 1.42579 1.05478 1.00783 1.88670 1.20303 0.93858 0.84738 0.94268 0.94594 1.22102 0.99673 0.96390 0.98553 1.21409 0.98084 0.93704 1.01272 1.21813 1.00540 0.98342 0.94765 1.20815 0.93775 0.85547 0.94418 0.90961 1.45897 1.11225 1.20042 1.58215 1.18357 0.87384 0.81963 0.77373 1.90552 1.15686 1.78258 1.60263 1.19860 0.94865 0.94535 1.04863 1.21871 0.91221 1.00186 0.94614 1.21252 1.02376 0.91983 0.96745 1.21343 0.91850 0.98637 0.97145 1.19219 0.95328 0.90379 0.97773 1.68099 1.14928 1.20326 1.17237 1.23587 0.88173 0.99703 0.93016 1.22378 1.03222 0.94232 0.99324 1.22675 0.95048 0.98488 0.95136 1.18840 0.95104 0.94816 1.00046 1.21891 0.99194 0.92829 1.01493 0.94098 0.79381 0.94059 0.92722 0.92312 0.90635 0.91969 0.90703 0.74880 0.82120 0.80713 0.82631 0.79017 0.81805 0.81994 0.90384 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.17 13.06 21.65 0.28 -57.89 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.92 29.55 68.60 2.03 47.95 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.23 -12.79 9.93 84.03 0.83 -11.96 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -35.75 5.12 -322.94 -1.65 -37.41 16 10 C 0.18 6.64 2.77 44.99 0.12 6.77 16 11 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 12 C -0.13 -4.25 5.50 30.60 0.17 -4.09 16 13 C -0.11 -2.78 5.92 30.60 0.18 -2.60 16 14 C -0.12 -2.78 5.49 30.60 0.17 -2.61 16 15 C 0.16 4.05 2.46 45.01 0.11 4.16 16 16 H 0.07 2.15 7.57 -2.39 -0.02 2.13 16 17 N -0.70 -14.78 5.03 -445.61 -2.24 -17.02 16 18 C 0.56 13.84 7.69 86.70 0.67 14.51 16 19 O -0.57 -17.40 13.07 -4.00 -0.05 -17.45 16 20 C -0.14 -2.93 5.90 -19.89 -0.12 -3.05 16 21 C -0.06 -0.85 9.51 22.55 0.21 -0.64 16 22 C -0.10 -1.20 9.92 21.97 0.22 -0.98 16 23 C -0.07 -1.11 9.96 22.40 0.22 -0.89 16 24 C 0.09 2.04 6.60 40.27 0.27 2.31 16 25 N -0.50 -10.61 10.34 -188.68 -1.95 -12.56 16 26 C 0.13 2.12 11.15 85.07 0.95 3.06 16 27 C -0.17 -3.00 10.03 22.17 0.22 -2.78 16 28 C -0.09 -2.07 9.29 22.45 0.21 -1.86 16 29 C -0.09 -2.02 5.76 -21.10 -0.12 -2.14 16 30 C -0.12 -3.36 4.86 30.61 0.15 -3.22 16 31 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.37 19.31 7.80 -92.71 -0.72 18.59 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.41 6.21 6.67 -92.71 -0.62 5.59 16 40 H 0.16 1.30 6.43 -2.91 -0.02 1.28 16 41 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 42 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 44 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 45 H 0.16 4.31 4.96 -3.20 -0.02 4.29 16 46 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -72.52 380.77 1.01 -71.51 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -0.34 Total: 32.70 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 4.93 Total: -9.82 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -5.56 Total: -124.88 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.52 1.01 -71.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981254822.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.081 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds