Wall clock time and date at job start Tue Mar 31 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99892 * 2 1 4 4 H 1.48502 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46731 * 299.99971 * 3 2 1 6 6 H 1.48497 * 109.47206 * 59.99743 * 3 2 1 7 7 C 1.38814 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00193 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.46986 * 325.00240 * 10 9 7 12 12 C 1.52998 * 109.47130 * 85.00420 * 10 9 7 13 13 C 1.52996 * 109.47326 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46942 * 300.00131 * 13 12 10 15 15 C 1.52998 * 109.47217 * 59.99802 * 14 13 12 16 16 H 1.08996 * 109.47488 * 60.00526 * 15 14 13 17 17 N 1.46502 * 109.46973 * 180.02562 * 15 14 13 18 18 C 1.34780 * 120.00168 * 275.00197 * 17 15 14 19 19 O 1.21590 * 119.99475 * 359.97438 * 18 17 15 20 20 C 1.47544 * 120.00461 * 180.02562 * 18 17 15 21 21 C 1.38695 * 120.38603 * 354.05095 * 20 18 17 22 22 C 1.38967 * 120.54150 * 180.02562 * 21 20 18 23 23 C 1.36209 * 121.23571 * 0.02562 * 22 21 20 24 24 C 1.40714 * 120.19959 * 0.02562 * 23 22 21 25 25 N 1.33686 * 120.93768 * 180.02562 * 24 23 22 26 26 C 1.31067 * 121.34062 * 179.97438 * 25 24 23 27 27 C 1.39340 * 121.70794 * 0.02562 * 26 25 24 28 28 C 1.36678 * 119.86667 * 359.97438 * 27 26 25 29 29 C 1.40469 * 118.17126 * 359.97438 * 28 27 26 30 30 C 1.52996 * 109.47326 * 299.99962 * 15 14 13 31 31 H 0.96997 * 120.00340 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99876 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.47083 * 59.99992 * 12 10 9 34 34 H 1.09004 * 109.46765 * 300.00058 * 12 10 9 35 35 H 1.09001 * 109.47166 * 179.97438 * 13 12 10 36 36 H 1.09004 * 109.47099 * 59.99937 * 13 12 10 37 37 H 1.08995 * 109.46973 * 299.99576 * 14 13 12 38 38 H 1.09005 * 109.46911 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00006 * 94.99613 * 17 15 14 40 40 H 1.08003 * 119.72836 * 0.04972 * 21 20 18 41 41 H 1.07995 * 119.38841 * 180.02562 * 22 21 20 42 42 H 1.07999 * 119.90026 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.14381 * 180.02562 * 26 25 24 44 44 H 1.07993 * 120.06934 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.91575 * 179.97438 * 28 27 26 46 46 H 1.08994 * 109.47367 * 180.02562 * 30 15 14 47 47 H 1.09004 * 109.47099 * 300.00063 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 1 2.9684 -3.5507 -0.5885 12 6 2.4231 -4.0350 1.4385 13 6 3.1887 -5.3596 1.4385 14 6 2.3116 -6.4555 0.8297 15 6 1.9467 -6.0773 -0.6072 16 1 2.8569 -5.9709 -1.1973 17 7 1.1064 -7.1264 -1.1899 18 6 1.6756 -8.2088 -1.7564 19 8 2.8866 -8.3143 -1.7842 20 6 0.8294 -9.2652 -2.3437 21 6 -0.5502 -9.2144 -2.2097 22 6 -1.3502 -10.2079 -2.7611 23 6 -0.8075 -11.2538 -3.4443 24 6 0.5874 -11.3472 -3.6043 25 7 1.1358 -12.3670 -4.2725 26 6 2.4339 -12.4616 -4.4267 27 6 3.3050 -11.5079 -3.9038 28 6 2.8083 -10.4402 -3.2100 29 6 1.4162 -10.3436 -3.0488 30 6 1.1811 -4.7527 -0.6072 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0016 33 1 1.5128 -4.1410 2.0286 34 1 3.0483 -3.2544 1.8720 35 1 3.4491 -5.6288 2.4621 36 1 4.0990 -5.2531 0.8484 37 1 1.4014 -6.5620 1.4197 38 1 2.8569 -7.3994 0.8301 39 1 0.1403 -7.0421 -1.1679 40 1 -1.0064 -8.3959 -1.6727 41 1 -2.4225 -10.1497 -2.6459 42 1 -1.4496 -12.0138 -3.8644 43 1 2.8390 -13.3004 -4.9733 44 1 4.3703 -11.6122 -4.0463 45 1 3.4679 -9.6913 -2.7971 46 1 0.9208 -4.4835 -1.6308 47 1 0.2708 -4.8591 -0.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981254823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:18 Heat of formation + Delta-G solvation = 3.558126 kcal Electronic energy + Delta-G solvation = -28386.403593 eV Core-core repulsion = 24532.790113 eV Total energy + Delta-G solvation = -3853.613479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13588 -40.84715 -39.30040 -37.92395 -36.31828 -34.92854 -34.33349 -32.95513 -31.73028 -31.54847 -30.26173 -29.28827 -25.84535 -25.62382 -24.65409 -24.38507 -23.21048 -22.49460 -21.61948 -20.84339 -19.41426 -19.05422 -18.54411 -17.90390 -17.35538 -17.13365 -16.56010 -16.22480 -16.02748 -15.74524 -15.45223 -15.31393 -15.27020 -14.98225 -14.89224 -14.73420 -14.26452 -14.12316 -13.84618 -13.58566 -13.38300 -13.07475 -12.91526 -12.85438 -12.72360 -12.34939 -12.24886 -12.13222 -12.02519 -11.97629 -11.66916 -11.54023 -11.49157 -11.38735 -11.13706 -10.88207 -10.29027 -10.15451 -9.83067 -9.33007 -8.99467 -7.94066 -5.21474 -0.90394 -0.20572 0.66872 1.47178 1.47690 1.57295 1.63742 1.98174 2.16806 2.56458 3.09583 3.30547 3.39418 3.47753 3.62201 3.75231 3.80405 3.85449 3.86292 4.02737 4.06383 4.16127 4.24564 4.31170 4.39485 4.43639 4.47619 4.53110 4.57858 4.66646 4.76618 4.77878 4.78495 4.97652 5.03559 5.08095 5.16662 5.19357 5.22666 5.24110 5.31549 5.35610 5.46700 5.50751 5.53814 5.58187 5.66163 5.78630 6.29081 6.45543 6.85128 7.12401 7.35486 8.11288 8.34799 9.29443 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002149 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.024866 B =13023.910234 C =13435.123056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.072 0.928 17 N -0.703 5.703 18 C 0.560 3.440 19 O -0.566 6.566 20 C -0.138 4.138 21 C -0.060 4.060 22 C -0.104 4.104 23 C -0.071 4.071 24 C 0.094 3.906 25 N -0.497 5.497 26 C 0.127 3.873 27 C -0.172 4.172 28 C -0.088 4.088 29 C -0.085 4.085 30 C -0.115 4.115 31 H 0.250 0.750 32 H 0.374 0.626 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.193 0.807 44 H 0.164 0.836 45 H 0.163 0.837 46 H 0.061 0.939 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -27.016 -5.054 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.154 4.154 15 C 0.055 3.945 16 H 0.090 0.910 17 N -0.354 5.354 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.141 4.141 21 C -0.078 4.078 22 C -0.123 4.123 23 C -0.090 4.090 24 C -0.027 4.027 25 N -0.206 5.206 26 C -0.045 4.045 27 C -0.192 4.192 28 C -0.114 4.114 29 C -0.088 4.088 30 C -0.154 4.154 31 H 0.059 0.941 32 H 0.206 0.794 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.180 0.820 41 H 0.193 0.807 42 H 0.174 0.826 43 H 0.210 0.790 44 H 0.182 0.818 45 H 0.180 0.820 46 H 0.080 0.920 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.308 -27.528 -5.395 28.053 hybrid contribution 0.341 1.988 0.359 2.049 sum 0.033 -25.540 -5.037 26.032 Atomic orbital electron populations 1.69795 1.06394 1.25844 1.59845 1.25480 0.96370 1.00803 1.04118 0.85162 0.78255 0.80305 0.76615 1.19297 1.22160 1.22122 1.19603 0.91291 0.85289 1.40440 0.91011 1.42578 1.05477 1.00785 1.88672 1.20301 0.93842 0.84733 0.94286 0.94624 1.22100 0.99683 0.96390 0.98526 1.21409 0.98079 0.93710 1.01282 1.21811 1.00568 0.98328 0.94733 1.20803 0.93740 0.85540 0.94460 0.90996 1.45899 1.11222 1.19982 1.58282 1.18360 0.87390 0.81996 0.77332 1.90552 1.15707 1.78589 1.59913 1.19859 0.94815 0.96003 1.03468 1.21873 0.91179 0.99033 0.95757 1.21254 1.02410 0.92563 0.96114 1.21344 0.91789 0.99036 0.96820 1.19224 0.95311 0.91300 0.96878 1.68099 1.14873 1.22189 1.15420 1.23587 0.88163 0.98239 0.94496 1.22376 1.03250 0.94932 0.98611 1.22671 0.95092 0.98778 0.94838 1.18842 0.95022 0.95621 0.99338 1.21882 0.99218 0.92861 1.01456 0.94093 0.79385 0.92688 0.94062 0.90619 0.92345 0.90615 0.91973 0.74879 0.82043 0.80673 0.82632 0.79019 0.81828 0.82029 0.91997 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.22 13.06 21.65 0.28 -57.93 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -35.79 5.12 -322.95 -1.65 -37.44 16 10 C 0.18 6.65 2.77 44.99 0.12 6.77 16 11 H 0.04 1.43 8.08 -2.39 -0.02 1.41 16 12 C -0.13 -4.24 5.50 30.59 0.17 -4.07 16 13 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 14 C -0.12 -2.76 5.49 30.59 0.17 -2.59 16 15 C 0.16 4.06 2.45 44.99 0.11 4.17 16 16 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 17 N -0.70 -14.78 5.03 -445.69 -2.24 -17.02 16 18 C 0.56 13.84 7.69 86.70 0.67 14.51 16 19 O -0.57 -17.42 13.07 -4.00 -0.05 -17.47 16 20 C -0.14 -2.94 5.90 -19.89 -0.12 -3.05 16 21 C -0.06 -0.83 9.51 22.55 0.21 -0.62 16 22 C -0.10 -1.19 9.92 21.97 0.22 -0.97 16 23 C -0.07 -1.11 9.96 22.40 0.22 -0.89 16 24 C 0.09 2.05 6.60 40.27 0.27 2.31 16 25 N -0.50 -10.66 10.34 -188.68 -1.95 -12.61 16 26 C 0.13 2.14 11.15 85.07 0.95 3.08 16 27 C -0.17 -3.04 10.04 22.17 0.22 -2.82 16 28 C -0.09 -2.10 9.29 22.45 0.21 -1.89 16 29 C -0.09 -2.03 5.76 -21.10 -0.12 -2.16 16 30 C -0.12 -3.37 4.86 30.59 0.15 -3.23 16 31 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.37 19.33 7.80 -92.70 -0.72 18.61 16 33 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.41 6.20 6.67 -92.71 -0.62 5.58 16 40 H 0.16 1.25 6.43 -2.91 -0.02 1.23 16 41 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 45 H 0.16 4.34 4.96 -3.20 -0.02 4.33 16 46 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -72.66 380.77 1.01 -71.65 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.34 Total: 32.68 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.93 Total: -9.83 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -5.56 Total: -125.00 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.66 1.01 -71.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981254823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.208 kcal (2) G-P(sol) polarization free energy of solvation -72.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds