Wall clock time and date at job start Tue Mar 31 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47438 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.47374 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.47148 * 150.00382 * 3 2 1 7 7 C 1.38816 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99655 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47529 * 325.00211 * 10 9 7 12 12 C 1.53002 * 109.47246 * 85.00927 * 10 9 7 13 13 C 1.52995 * 109.47286 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.46986 * 299.99448 * 13 12 10 15 15 C 1.53009 * 109.47248 * 60.00228 * 14 13 12 16 16 H 1.08996 * 109.47061 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46654 * 59.99692 * 15 14 13 18 18 C 1.34776 * 119.99507 * 85.00731 * 17 15 14 19 19 O 1.21564 * 120.00596 * 359.97438 * 18 17 15 20 20 C 1.47780 * 119.99551 * 179.97438 * 18 17 15 21 21 C 1.40647 * 119.70026 * 359.72506 * 20 18 17 22 22 C 1.35842 * 120.87687 * 180.27257 * 21 20 18 23 23 C 1.40397 * 119.84607 * 0.02562 * 22 21 20 24 24 C 1.40636 * 121.97038 * 180.02562 * 23 22 21 25 25 C 1.36219 * 118.72849 * 180.02562 * 24 23 22 26 26 N 1.32599 * 121.89890 * 359.95558 * 25 24 23 27 27 C 1.31230 * 122.74430 * 0.02562 * 26 25 24 28 28 C 1.40549 * 119.89047 * 359.97438 * 27 26 25 29 29 C 1.38575 * 119.69721 * 179.97438 * 20 18 17 30 30 C 1.52995 * 109.46941 * 299.99800 * 15 14 13 31 31 H 0.96994 * 120.00303 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00046 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.46917 * 59.99280 * 12 10 9 34 34 H 1.09001 * 109.46422 * 299.99997 * 12 10 9 35 35 H 1.09004 * 109.47241 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.47401 * 59.99338 * 13 12 10 37 37 H 1.09004 * 109.47473 * 300.00463 * 14 13 12 38 38 H 1.09001 * 109.47449 * 180.02562 * 14 13 12 39 39 H 0.96993 * 120.00231 * 264.99986 * 17 15 14 40 40 H 1.08006 * 119.55958 * 0.24884 * 21 20 18 41 41 H 1.08003 * 120.07877 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.63604 * 0.02562 * 24 23 22 43 43 H 1.08006 * 119.05218 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.05639 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.34249 * 359.70203 * 29 20 18 46 46 H 1.08997 * 109.47202 * 179.97438 * 30 15 14 47 47 H 1.08996 * 109.47401 * 300.00150 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5917 12 6 2.4228 -4.0364 1.4349 13 6 3.1873 -5.3617 1.4338 14 6 2.3092 -6.4564 0.8245 15 6 1.9443 -6.0769 -0.6122 16 1 1.3191 -6.8570 -1.0463 17 7 3.1678 -5.9343 -1.4052 18 6 3.7333 -7.0183 -1.9723 19 8 3.2285 -8.1144 -1.8254 20 6 4.9672 -6.8744 -2.7728 21 6 5.5427 -5.6024 -2.9435 22 6 6.6734 -5.4419 -3.6790 23 6 7.2803 -6.5563 -4.2798 24 6 8.4515 -6.4416 -5.0498 25 6 8.9842 -7.5666 -5.6030 26 7 8.4309 -8.7598 -5.4346 27 6 7.3393 -8.9429 -4.7296 28 6 6.7097 -7.8464 -4.1158 29 6 5.5437 -7.9931 -3.3527 30 6 1.1798 -4.7516 -0.6110 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 1.5125 -4.1429 2.0249 34 1 3.0480 -3.2562 1.8691 35 1 3.4476 -5.6319 2.4572 36 1 4.0975 -5.2556 0.8437 37 1 1.3988 -6.5625 1.4146 38 1 2.8536 -7.4007 0.8241 39 1 3.5707 -5.0598 -1.5223 40 1 5.0792 -4.7419 -2.4840 41 1 7.1046 -4.4593 -3.8013 42 1 8.9196 -5.4799 -5.1996 43 1 9.8834 -7.4844 -6.1957 44 1 6.9259 -9.9347 -4.6204 45 1 5.0987 -8.9679 -3.2182 46 1 0.9202 -4.4811 -1.6345 47 1 0.2696 -4.8577 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981442694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:37 Heat of formation + Delta-G solvation = 17.381391 kcal Electronic energy + Delta-G solvation = -28612.357212 eV Core-core repulsion = 24759.343154 eV Total energy + Delta-G solvation = -3853.014058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24443 -40.13348 -38.24134 -37.11276 -34.57995 -33.32767 -33.24340 -31.66844 -31.18527 -30.15657 -29.42861 -27.91502 -25.11721 -24.26564 -23.77385 -22.70854 -22.12253 -21.49910 -21.02771 -19.00053 -18.57530 -18.06594 -17.23339 -16.94196 -16.12706 -15.61747 -15.49930 -15.30675 -15.01467 -14.54124 -14.43765 -14.33904 -14.08065 -13.90061 -13.76337 -13.58384 -13.43809 -13.09966 -12.56911 -12.30849 -12.25317 -12.08473 -11.91023 -11.76621 -11.60851 -11.05063 -10.94010 -10.83121 -10.56637 -10.43274 -10.24308 -10.23487 -10.10162 -9.80711 -9.80200 -9.58006 -9.49079 -9.01991 -8.90609 -8.44198 -7.03049 -5.83201 -3.12424 -0.11695 0.36887 1.46373 2.29516 3.10304 3.17565 3.37754 3.43054 3.45094 3.75645 4.02748 4.16953 4.31561 4.38419 4.51042 4.55840 4.67340 4.77598 4.85516 5.00567 5.05329 5.12917 5.22618 5.32214 5.41996 5.44248 5.52366 5.55199 5.59975 5.64320 5.70941 5.81925 5.90722 5.93186 5.99926 6.01140 6.05445 6.19415 6.23256 6.24673 6.35980 6.44100 6.51652 6.59374 6.66376 6.87979 7.02769 7.49458 7.58284 7.62166 8.14868 8.35067 9.46371 10.03643 10.38004 11.39298 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002715 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.760324 B =10308.887603 C =12046.755000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.086 0.914 17 N -0.710 5.710 18 C 0.557 3.443 19 O -0.542 6.542 20 C -0.132 4.132 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.008 4.008 24 C -0.159 4.159 25 C 0.082 3.918 26 N -0.493 5.493 27 C 0.158 3.842 28 C -0.124 4.124 29 C -0.018 4.018 30 C -0.135 4.135 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.402 0.598 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.167 0.833 45 H 0.149 0.851 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.877 -15.865 -7.150 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.047 3.953 16 H 0.104 0.896 17 N -0.362 5.362 18 C 0.344 3.656 19 O -0.421 6.421 20 C -0.136 4.136 21 C -0.089 4.089 22 C -0.134 4.134 23 C -0.014 4.014 24 C -0.178 4.178 25 C -0.061 4.061 26 N -0.201 5.201 27 C -0.014 4.014 28 C -0.126 4.126 29 C -0.039 4.039 30 C -0.173 4.173 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.240 0.760 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.171 0.829 44 H 0.184 0.816 45 H 0.166 0.834 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.117 -17.072 -7.494 23.386 hybrid contribution -0.038 2.337 0.449 2.380 sum 14.080 -14.735 -7.044 21.564 Atomic orbital electron populations 1.69652 1.05110 1.25718 1.57460 1.24743 0.95498 0.97693 1.02931 0.86224 0.78679 0.83965 0.77507 1.21727 1.21771 1.20777 1.19198 0.90895 0.84095 1.42948 0.91264 1.42419 1.05805 0.99660 1.88597 1.20136 0.93790 0.86024 0.92940 0.94294 1.22293 0.99849 0.95177 1.00453 1.21505 0.98430 0.95643 0.99803 1.21901 1.00659 0.98621 0.95415 1.21003 0.84948 0.98514 0.90849 0.89589 1.46150 1.28046 1.10248 1.51796 1.18170 0.83726 0.84618 0.79130 1.90760 1.63820 1.25768 1.61704 1.20032 0.97311 0.94232 1.01986 1.21138 0.95026 0.96472 0.96305 1.20904 0.96169 0.98237 0.98041 1.18317 0.94484 0.93099 0.95459 1.21962 0.96151 1.00809 0.98918 1.22263 0.99095 0.87524 0.97219 1.67479 1.10710 1.26075 1.15801 1.23319 0.89988 0.98124 0.89970 1.19009 0.97591 0.94555 1.01494 1.21438 0.91912 0.99237 0.91327 1.22146 0.99358 0.93502 1.02329 0.93464 0.78211 0.92477 0.92049 0.92785 0.92710 0.91016 0.92019 0.76001 0.84797 0.84329 0.84168 0.82866 0.81605 0.83370 0.91159 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.72 -16.93 5.12 -53.42 -0.27 -17.20 16 10 C 0.18 3.21 2.60 -67.92 -0.18 3.04 16 11 H 0.04 0.68 6.44 -51.93 -0.33 0.34 16 12 C -0.14 -2.27 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.55 5.77 -26.74 -0.15 -1.71 16 14 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 15 C 0.15 2.01 2.78 -67.93 -0.19 1.82 16 16 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 17 N -0.71 -8.87 4.18 -54.77 -0.23 -9.10 16 18 C 0.56 7.32 7.73 -12.36 -0.10 7.22 16 19 O -0.54 -8.56 15.96 5.31 0.08 -8.48 16 20 C -0.13 -1.47 5.87 -104.96 -0.62 -2.09 16 21 C -0.07 -0.68 9.44 -39.53 -0.37 -1.05 16 22 C -0.12 -1.02 9.77 -39.63 -0.39 -1.41 16 23 C -0.01 -0.08 5.75 -106.74 -0.61 -0.69 16 24 C -0.16 -1.26 9.87 -39.40 -0.39 -1.64 16 25 C 0.08 0.68 11.07 -17.95 -0.20 0.48 16 26 N -0.49 -4.88 10.30 -13.12 -0.14 -5.01 16 27 C 0.16 1.40 11.05 -16.94 -0.19 1.22 16 28 C -0.12 -1.21 5.74 -106.87 -0.61 -1.83 16 29 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 30 C -0.13 -2.02 5.08 -26.73 -0.14 -2.16 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.40 4.70 4.84 -40.82 -0.20 4.50 16 40 H 0.13 1.15 6.34 -52.48 -0.33 0.82 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.15 1.38 7.61 -52.49 -0.40 0.98 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -31.99 381.48 -10.71 -42.70 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.57 Total: 11.73 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -5.03 Total: -10.44 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.09 Total: -57.86 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.99 -10.71 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981442694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.082 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds