Wall clock time and date at job start Tue Mar 31 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00110 * 2 1 4 4 H 1.48503 * 109.47438 * 270.00375 * 3 2 1 5 5 H 1.48502 * 109.47374 * 30.00363 * 3 2 1 6 6 H 1.48502 * 109.47148 * 150.00382 * 3 2 1 7 7 C 1.38816 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99655 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47529 * 325.00211 * 10 9 7 12 12 C 1.53002 * 109.47246 * 85.00927 * 10 9 7 13 13 C 1.52995 * 109.47286 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.46986 * 299.99448 * 13 12 10 15 15 C 1.53009 * 109.47248 * 60.00228 * 14 13 12 16 16 H 1.08996 * 109.47061 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46654 * 59.99692 * 15 14 13 18 18 C 1.34776 * 119.99507 * 85.00731 * 17 15 14 19 19 O 1.21564 * 120.00596 * 359.97438 * 18 17 15 20 20 C 1.47780 * 119.99551 * 179.97438 * 18 17 15 21 21 C 1.40647 * 119.70026 * 359.72506 * 20 18 17 22 22 C 1.35842 * 120.87687 * 180.27257 * 21 20 18 23 23 C 1.40397 * 119.84607 * 0.02562 * 22 21 20 24 24 C 1.40636 * 121.97038 * 180.02562 * 23 22 21 25 25 C 1.36219 * 118.72849 * 180.02562 * 24 23 22 26 26 N 1.32599 * 121.89890 * 359.95558 * 25 24 23 27 27 C 1.31230 * 122.74430 * 0.02562 * 26 25 24 28 28 C 1.40549 * 119.89047 * 359.97438 * 27 26 25 29 29 C 1.38575 * 119.69721 * 179.97438 * 20 18 17 30 30 C 1.52995 * 109.46941 * 299.99800 * 15 14 13 31 31 H 0.96994 * 120.00303 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00046 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.46917 * 59.99280 * 12 10 9 34 34 H 1.09001 * 109.46422 * 299.99997 * 12 10 9 35 35 H 1.09004 * 109.47241 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.47401 * 59.99338 * 13 12 10 37 37 H 1.09004 * 109.47473 * 300.00463 * 14 13 12 38 38 H 1.09001 * 109.47449 * 180.02562 * 14 13 12 39 39 H 0.96993 * 120.00231 * 264.99986 * 17 15 14 40 40 H 1.08006 * 119.55958 * 0.24884 * 21 20 18 41 41 H 1.08003 * 120.07877 * 180.02562 * 22 21 20 42 42 H 1.08002 * 120.63604 * 0.02562 * 24 23 22 43 43 H 1.08006 * 119.05218 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.05639 * 180.02562 * 27 26 25 45 45 H 1.07997 * 120.34249 * 359.70203 * 29 20 18 46 46 H 1.08997 * 109.47202 * 179.97438 * 30 15 14 47 47 H 1.08996 * 109.47401 * 300.00150 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5917 12 6 2.4228 -4.0364 1.4349 13 6 3.1873 -5.3617 1.4338 14 6 2.3092 -6.4564 0.8245 15 6 1.9443 -6.0769 -0.6122 16 1 1.3191 -6.8570 -1.0463 17 7 3.1678 -5.9343 -1.4052 18 6 3.7333 -7.0183 -1.9723 19 8 3.2285 -8.1144 -1.8254 20 6 4.9672 -6.8744 -2.7728 21 6 5.5427 -5.6024 -2.9435 22 6 6.6734 -5.4419 -3.6790 23 6 7.2803 -6.5563 -4.2798 24 6 8.4515 -6.4416 -5.0498 25 6 8.9842 -7.5666 -5.6030 26 7 8.4309 -8.7598 -5.4346 27 6 7.3393 -8.9429 -4.7296 28 6 6.7097 -7.8464 -4.1158 29 6 5.5437 -7.9931 -3.3527 30 6 1.1798 -4.7516 -0.6110 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 1.5125 -4.1429 2.0249 34 1 3.0480 -3.2562 1.8691 35 1 3.4476 -5.6319 2.4572 36 1 4.0975 -5.2556 0.8437 37 1 1.3988 -6.5625 1.4146 38 1 2.8536 -7.4007 0.8241 39 1 3.5707 -5.0598 -1.5223 40 1 5.0792 -4.7419 -2.4840 41 1 7.1046 -4.4593 -3.8013 42 1 8.9196 -5.4799 -5.1996 43 1 9.8834 -7.4844 -6.1957 44 1 6.9259 -9.9347 -4.6204 45 1 5.0987 -8.9679 -3.2182 46 1 0.9202 -4.4811 -1.6345 47 1 0.2696 -4.8577 -0.0209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981442694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:36 Heat of formation + Delta-G solvation = -1.071178 kcal Electronic energy + Delta-G solvation = -28613.157375 eV Core-core repulsion = 24759.343154 eV Total energy + Delta-G solvation = -3853.814221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99140 -41.13729 -39.38302 -37.94047 -36.16232 -34.55658 -34.00835 -32.98121 -32.40191 -30.97833 -30.48802 -29.46975 -25.95939 -25.60470 -24.96183 -23.53463 -23.18822 -22.59248 -22.26379 -20.21097 -19.55895 -19.06061 -18.71224 -17.72786 -17.12100 -16.76502 -16.56157 -16.32278 -16.01172 -15.94481 -15.45760 -15.26276 -15.04252 -14.96799 -14.85115 -14.76568 -14.52790 -14.24098 -13.90528 -13.54703 -13.10046 -13.09720 -13.00899 -12.87898 -12.84166 -12.78306 -12.30923 -12.21758 -12.05362 -11.94106 -11.59717 -11.46004 -11.24573 -11.10876 -11.00059 -10.82981 -10.51669 -10.26466 -10.02362 -9.12123 -8.97154 -7.91165 -5.18946 -0.81673 -0.34719 0.76972 1.49415 1.49823 1.50191 1.58270 2.11022 2.32756 2.58180 3.04914 3.42462 3.44831 3.48417 3.60292 3.64859 3.70615 3.86320 3.87981 3.92833 3.99436 4.05955 4.26901 4.30675 4.32608 4.36626 4.55935 4.63637 4.66338 4.68185 4.72582 4.77557 4.80578 4.88546 4.93659 4.97211 5.10700 5.16110 5.20234 5.23683 5.31299 5.37746 5.47236 5.52029 5.56272 5.60064 5.66623 5.70263 6.30952 6.48342 6.94372 7.13482 7.37375 8.14153 8.36118 9.32400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012274 B = 0.002715 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.760324 B =10308.887603 C =12046.755000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.047 0.953 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.159 3.841 16 H 0.085 0.915 17 N -0.706 5.706 18 C 0.559 3.441 19 O -0.573 6.573 20 C -0.148 4.148 21 C -0.078 4.078 22 C -0.112 4.112 23 C -0.022 4.022 24 C -0.157 4.157 25 C 0.073 3.927 26 N -0.514 5.514 27 C 0.152 3.848 28 C -0.136 4.136 29 C -0.018 4.018 30 C -0.122 4.122 31 H 0.249 0.751 32 H 0.372 0.628 33 H 0.048 0.952 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.407 0.593 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.178 0.822 44 H 0.187 0.813 45 H 0.151 0.849 46 H 0.062 0.938 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.192 -16.210 -7.645 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.168 4.168 13 C -0.143 4.143 14 C -0.160 4.160 15 C 0.054 3.946 16 H 0.103 0.897 17 N -0.358 5.358 18 C 0.347 3.653 19 O -0.454 6.454 20 C -0.151 4.151 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.028 4.028 24 C -0.176 4.176 25 C -0.069 4.069 26 N -0.222 5.222 27 C -0.019 4.019 28 C -0.138 4.138 29 C -0.038 4.038 30 C -0.161 4.161 31 H 0.057 0.943 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.245 0.755 40 H 0.160 0.840 41 H 0.181 0.819 42 H 0.186 0.814 43 H 0.195 0.805 44 H 0.204 0.796 45 H 0.169 0.831 46 H 0.081 0.919 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.485 -17.446 -7.987 25.296 hybrid contribution -0.669 2.347 0.550 2.502 sum 15.816 -15.098 -7.437 23.095 Atomic orbital electron populations 1.69808 1.06598 1.25816 1.59948 1.25504 0.96267 1.00938 1.04271 0.85228 0.77783 0.79965 0.77342 1.21500 1.22829 1.19339 1.19599 0.91432 0.85081 1.40231 0.90381 1.42644 1.05459 1.00953 1.88585 1.20369 0.94006 0.84634 0.94069 0.93527 1.22116 0.99501 0.96375 0.98846 1.21409 0.98175 0.93803 1.00926 1.21856 1.00943 0.98304 0.94918 1.20869 0.85149 0.97123 0.91471 0.89731 1.46084 1.27683 1.10472 1.51575 1.18445 0.84037 0.84059 0.78754 1.90739 1.64877 1.26830 1.62932 1.19937 0.96997 0.95304 1.02871 1.21226 0.95549 0.96074 0.96905 1.21176 0.95576 0.99149 0.97016 1.18635 0.95173 0.93169 0.95775 1.22261 0.95421 1.01992 0.97919 1.22742 0.99766 0.87207 0.97207 1.67529 1.11179 1.27146 1.16337 1.23663 0.89787 0.98920 0.89520 1.19132 0.97614 0.95286 1.01798 1.21511 0.92035 0.99205 0.91093 1.21985 0.99115 0.93441 1.01569 0.94258 0.79664 0.93345 0.93945 0.91405 0.92066 0.90207 0.91840 0.75465 0.83993 0.81948 0.81421 0.80459 0.79643 0.83137 0.91883 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.91 13.06 21.65 0.28 -57.63 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 44.51 29.55 68.60 2.03 46.54 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.23 -12.06 9.93 84.03 0.83 -11.22 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -34.51 5.12 -322.93 -1.65 -36.16 16 10 C 0.18 6.16 2.60 45.00 0.12 6.27 16 11 H 0.05 1.56 6.44 -2.39 -0.02 1.54 16 12 C -0.13 -4.11 5.50 30.59 0.17 -3.94 16 13 C -0.10 -2.61 5.77 30.59 0.18 -2.43 16 14 C -0.12 -2.91 5.60 30.60 0.17 -2.74 16 15 C 0.16 4.03 2.78 44.99 0.13 4.15 16 16 H 0.08 2.24 7.57 -2.39 -0.02 2.23 16 17 N -0.71 -16.83 4.18 -445.47 -1.86 -18.69 16 18 C 0.56 14.27 7.73 86.77 0.67 14.94 16 19 O -0.57 -17.87 15.96 -3.92 -0.06 -17.93 16 20 C -0.15 -3.17 5.87 -20.09 -0.12 -3.28 16 21 C -0.08 -1.39 9.44 22.30 0.21 -1.18 16 22 C -0.11 -1.72 9.77 22.24 0.22 -1.50 16 23 C -0.02 -0.38 5.75 -21.23 -0.12 -0.50 16 24 C -0.16 -2.07 9.87 22.38 0.22 -1.85 16 25 C 0.07 1.05 11.07 84.11 0.93 1.98 16 26 N -0.51 -9.39 10.30 -195.41 -2.01 -11.40 16 27 C 0.15 2.54 11.05 85.35 0.94 3.48 16 28 C -0.14 -2.50 5.74 -21.32 -0.12 -2.62 16 29 C -0.02 -0.35 9.37 22.81 0.21 -0.13 16 30 C -0.12 -3.59 5.08 30.60 0.16 -3.44 16 31 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.37 19.07 7.80 -92.71 -0.72 18.34 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.46 7.60 -2.39 -0.02 1.44 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 8.94 4.84 -92.71 -0.45 8.49 16 40 H 0.14 2.20 6.34 -2.91 -0.02 2.18 16 41 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 42 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.15 2.77 7.61 -2.91 -0.02 2.75 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -68.61 381.48 1.81 -66.80 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.17 Total: 36.32 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.26 Total: -7.84 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -5.25 Total: -123.89 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.06 Total: -17.93 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.61 1.81 -66.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981442694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.729 kcal (2) G-P(sol) polarization free energy of solvation -68.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds