Wall clock time and date at job start Tue Mar 31 2020 22:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47151 * 85.42353 * 3 2 1 5 5 H 1.48501 * 109.47261 * 325.42435 * 3 2 1 6 6 H 1.48499 * 109.47272 * 205.42044 * 3 2 1 7 7 C 1.38817 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99847 * 197.24495 * 7 2 1 9 9 N 1.36931 * 119.99628 * 17.24628 * 7 2 1 10 10 C 1.43461 * 118.94186 * 207.05566 * 9 7 2 11 11 C 1.53799 * 107.96125 * 273.61419 * 10 9 7 12 12 C 1.47141 * 111.84107 * 281.66756 * 11 10 9 13 13 N 1.48208 * 110.34552 * 58.28980 * 12 11 10 14 14 C 1.34782 * 119.96662 * 102.51554 * 13 12 11 15 15 O 1.21578 * 120.00013 * 355.99645 * 14 13 12 16 16 C 1.47576 * 119.99985 * 175.99850 * 14 13 12 17 17 C 1.39663 * 120.19260 * 108.45196 * 16 14 13 18 18 C 1.37824 * 119.91455 * 179.71632 * 17 16 14 19 19 C 1.38534 * 120.31296 * 0.56829 * 18 17 16 20 20 C 1.38071 * 120.38904 * 359.71274 * 19 18 17 21 21 C 1.38753 * 120.07538 * 0.02562 * 20 19 18 22 22 N 1.39675 * 120.15348 * 180.02562 * 21 20 19 23 23 C 1.36654 * 125.67901 * 130.04398 * 22 21 20 24 24 C 1.34802 * 108.19369 * 179.89010 * 23 22 21 25 25 C 1.40990 * 107.48676 * 0.36688 * 24 23 22 26 26 C 1.34814 * 107.48655 * 359.77000 * 25 24 23 27 27 C 1.43621 * 120.06321 * 282.49934 * 13 12 11 28 28 C 1.48864 * 118.94170 * 26.78995 * 9 7 2 29 29 H 0.97006 * 120.00172 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.76164 * 33.22580 * 10 9 7 31 31 H 1.08996 * 109.76575 * 153.94638 * 10 9 7 32 32 H 1.09000 * 109.00273 * 42.26728 * 11 10 9 33 33 H 1.08991 * 109.01013 * 161.13239 * 11 10 9 34 34 H 1.08995 * 109.32588 * 178.56551 * 12 11 10 35 35 H 1.09001 * 109.32108 * 298.20233 * 12 11 10 36 36 H 1.07997 * 120.04086 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.84895 * 180.25662 * 18 17 16 38 38 H 1.08005 * 119.80384 * 179.73900 * 19 18 17 39 39 H 1.08004 * 119.95752 * 179.97438 * 20 19 18 40 40 H 1.08003 * 125.90431 * 0.03665 * 23 22 21 41 41 H 1.07996 * 126.25770 * 180.15658 * 24 23 22 42 42 H 1.08002 * 126.25838 * 179.74883 * 25 24 23 43 43 H 1.07993 * 125.90449 * 179.97438 * 26 25 24 44 44 H 1.09000 * 108.87334 * 211.44362 * 27 13 12 45 45 H 1.08998 * 108.87450 * 329.97633 * 27 13 12 46 46 H 1.09004 * 109.47703 * 260.62246 * 28 9 7 47 47 H 1.09000 * 109.48015 * 20.65569 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4009 2.1023 1.3956 5 1 1.4994 2.6229 -0.7945 6 1 3.5928 1.4141 -0.6010 7 6 2.0102 -1.2022 0.0005 8 1 3.0538 -1.2230 0.2778 9 7 1.3717 -2.3615 -0.3505 10 6 1.8478 -3.6053 0.1829 11 6 2.9674 -4.1187 -0.7382 12 6 2.4301 -4.7397 -1.9592 13 7 1.5932 -3.7702 -2.7050 14 6 2.0856 -3.1587 -3.8006 15 8 3.2393 -3.3468 -4.1349 16 6 1.2243 -2.2609 -4.5943 17 6 1.4356 -0.8806 -4.5682 18 6 0.6316 -0.0479 -5.3163 19 6 -0.3939 -0.5724 -6.0860 20 6 -0.6178 -1.9344 -6.1167 21 6 0.1853 -2.7881 -5.3741 22 7 -0.0394 -4.1663 -5.4044 23 6 0.9093 -5.1238 -5.6291 24 6 0.3099 -6.3302 -5.5789 25 6 -1.0592 -6.1126 -5.3223 26 6 -1.2457 -4.7814 -5.2200 27 6 0.2579 -3.4818 -2.2615 28 6 0.2021 -2.2901 -1.2687 29 1 -0.4851 0.8401 -0.0004 30 1 2.2399 -3.4492 1.1879 31 1 1.0335 -4.3291 0.2132 32 1 3.6084 -3.2826 -1.0178 33 1 3.5613 -4.8560 -0.1981 34 1 3.2559 -5.0650 -2.5918 35 1 1.8223 -5.6027 -1.6874 36 1 2.2306 -0.4667 -3.9658 37 1 0.7985 1.0190 -5.2985 38 1 -1.0217 0.0881 -6.6658 39 1 -1.4196 -2.3358 -6.7189 40 1 1.9585 -4.9450 -5.8127 41 1 0.7901 -7.2880 -5.7142 42 1 -1.8198 -6.8734 -5.2257 43 1 -2.1859 -4.2866 -5.0263 44 1 -0.3588 -3.2474 -3.1291 45 1 -0.1485 -4.3651 -1.7689 46 1 -0.7192 -2.3393 -0.6882 47 1 0.2325 -1.3526 -1.8239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981869069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:37 Heat of formation + Delta-G solvation = 90.322364 kcal Electronic energy + Delta-G solvation = -31521.961715 eV Core-core repulsion = 27672.110615 eV Total energy + Delta-G solvation = -3849.851100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69119 -39.78810 -38.38055 -36.89193 -34.25813 -33.26802 -32.69087 -31.17641 -30.79921 -28.83913 -28.74353 -27.55309 -25.64804 -23.86673 -23.68098 -22.96903 -21.79011 -20.24596 -20.06569 -19.76587 -19.07374 -17.98732 -17.25481 -16.35718 -16.26490 -15.57831 -15.45994 -14.90131 -14.46858 -14.30763 -14.14416 -13.85373 -13.70755 -13.48344 -13.44850 -13.10624 -13.04085 -12.56486 -12.40030 -12.35674 -12.22307 -11.98475 -11.80272 -11.75103 -11.39203 -11.35238 -11.05451 -10.78094 -10.56962 -10.29807 -10.21380 -9.89230 -9.71638 -9.53308 -9.45046 -8.96930 -8.50183 -8.21717 -8.16223 -8.01647 -6.70012 -5.82806 -3.24593 0.91720 1.20553 2.39134 2.89956 2.94023 3.12524 3.31722 3.38663 3.40120 3.43985 3.71927 4.47018 4.67559 4.77639 4.98896 5.01282 5.19809 5.27192 5.30503 5.34450 5.38965 5.48849 5.56953 5.59567 5.66549 5.73605 5.80536 5.88062 5.93787 6.07459 6.11997 6.14117 6.26834 6.30955 6.31388 6.37248 6.41202 6.45933 6.52880 6.72056 6.82323 6.88545 7.01444 7.04462 7.24824 7.32144 7.42594 7.53213 7.79025 7.90049 8.42009 8.52982 9.17510 9.85673 10.32805 11.25118 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.005530 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.787985 B = 5062.518857 C = 6240.564408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.892 3.108 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.588 5.588 10 C 0.162 3.838 11 C -0.169 4.169 12 C 0.132 3.868 13 N -0.563 5.563 14 C 0.568 3.432 15 O -0.550 6.550 16 C -0.107 4.107 17 C -0.053 4.053 18 C -0.115 4.115 19 C -0.092 4.092 20 C -0.125 4.125 21 C 0.142 3.858 22 N -0.400 5.400 23 C 0.000 4.000 24 C -0.196 4.196 25 C -0.193 4.193 26 C -0.009 4.009 27 C 0.083 3.917 28 C 0.168 3.832 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.042 0.958 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -7.225 -11.484 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.721 3.279 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.310 5.310 10 C 0.034 3.966 11 C -0.210 4.210 12 C 0.011 3.989 13 N -0.292 5.292 14 C 0.355 3.645 15 O -0.429 6.429 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.111 4.111 20 C -0.145 4.145 21 C 0.051 3.949 22 N -0.073 5.073 23 C -0.127 4.127 24 C -0.220 4.220 25 C -0.218 4.218 26 C -0.136 4.136 27 C -0.043 4.043 28 C 0.042 3.958 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.289 -6.924 -11.610 13.912 hybrid contribution 0.330 1.048 0.192 1.116 sum -2.959 -5.875 -11.419 13.178 Atomic orbital electron populations 1.70031 1.05135 1.25358 1.54253 1.24954 0.95154 0.98133 1.00862 0.86446 0.79447 0.84174 0.77805 1.21419 1.21488 1.20442 1.19129 0.92816 0.85235 1.41163 0.91942 1.43623 1.34440 1.01995 1.50933 1.20290 0.93465 0.88305 0.94562 1.21869 1.01289 1.00742 0.97146 1.20575 0.94666 0.90112 0.93534 1.47215 1.15288 1.41453 1.25276 1.17944 0.86445 0.79362 0.80745 1.90745 1.17339 1.63662 1.71170 1.19915 0.97361 0.95060 0.98810 1.21158 0.98775 0.90695 0.96582 1.21201 0.95222 1.00417 0.96481 1.21115 0.97363 0.94225 0.98410 1.20938 1.00554 0.93448 0.99511 1.17584 0.96928 0.81831 0.98586 1.41417 1.08502 1.02971 1.54442 1.22022 0.94831 0.87526 1.08340 1.20857 0.94536 0.96653 1.09966 1.20874 0.96684 0.94577 1.09622 1.21895 0.88841 0.93099 1.09778 1.22237 0.82259 1.00758 0.99006 1.21906 0.89989 0.94443 0.89439 0.93734 0.93553 0.94914 0.91293 0.92544 0.90538 0.91933 0.84418 0.84883 0.84975 0.85035 0.82309 0.84685 0.84585 0.82107 0.91917 0.92145 0.94050 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.20 55.49 0.62 -24.46 16 2 C 0.01 0.20 4.86 -17.43 -0.08 0.12 16 3 Si 0.89 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.76 9.23 -15.06 -0.14 -6.90 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.04 2.52 -171.78 -0.43 -14.47 16 10 C 0.16 3.30 5.63 -5.23 -0.03 3.27 16 11 C -0.17 -3.10 5.64 -29.13 -0.16 -3.26 16 12 C 0.13 2.28 5.68 -5.92 -0.03 2.25 16 13 N -0.56 -10.45 2.46 -177.66 -0.44 -10.89 16 14 C 0.57 11.10 4.91 -12.45 -0.06 11.04 16 15 O -0.55 -12.06 16.36 5.30 0.09 -11.97 16 16 C -0.11 -1.87 4.42 -104.82 -0.46 -2.33 16 17 C -0.05 -0.89 9.78 -39.20 -0.38 -1.27 16 18 C -0.11 -1.54 10.02 -39.62 -0.40 -1.94 16 19 C -0.09 -1.07 10.03 -39.53 -0.40 -1.47 16 20 C -0.13 -1.55 9.64 -39.45 -0.38 -1.94 16 21 C 0.14 2.14 4.67 -83.36 -0.39 1.75 16 22 N -0.40 -5.78 2.26 -60.69 -0.14 -5.91 16 23 C 0.00 0.00 9.75 -16.62 -0.16 -0.16 16 24 C -0.20 -2.61 10.86 -39.76 -0.43 -3.04 16 25 C -0.19 -2.40 10.86 -39.75 -0.43 -2.83 16 26 C -0.01 -0.12 10.63 -16.62 -0.18 -0.30 16 27 C 0.08 1.53 5.13 -4.40 -0.02 1.51 16 28 C 0.17 3.79 5.22 -1.56 -0.01 3.78 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 31 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 32 H 0.07 1.49 7.91 -51.93 -0.41 1.08 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.34 7.17 -51.93 -0.37 0.96 16 35 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.13 1.34 8.05 -52.48 -0.42 0.92 16 40 H 0.16 2.51 7.53 -52.48 -0.40 2.12 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 42 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 44 H 0.06 1.11 4.72 -51.93 -0.25 0.86 16 45 H 0.06 1.06 7.72 -51.93 -0.40 0.65 16 46 H 0.04 1.01 7.98 -51.93 -0.41 0.59 16 47 H 0.07 1.76 6.73 -51.93 -0.35 1.41 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -30.80 376.83 -10.55 -41.35 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.75 Total: 6.15 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -4.15 Total: -1.73 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.39 Total: -55.73 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.80 -10.55 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981869069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.672 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds