Wall clock time and date at job start Tue Mar 31 2020 22:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86801 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47151 * 85.42353 * 3 2 1 5 5 H 1.48501 * 109.47261 * 325.42435 * 3 2 1 6 6 H 1.48499 * 109.47272 * 205.42044 * 3 2 1 7 7 C 1.38817 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99847 * 197.24495 * 7 2 1 9 9 N 1.36931 * 119.99628 * 17.24628 * 7 2 1 10 10 C 1.43461 * 118.94186 * 207.05566 * 9 7 2 11 11 C 1.53799 * 107.96125 * 273.61419 * 10 9 7 12 12 C 1.47141 * 111.84107 * 281.66756 * 11 10 9 13 13 N 1.48208 * 110.34552 * 58.28980 * 12 11 10 14 14 C 1.34782 * 119.96662 * 102.51554 * 13 12 11 15 15 O 1.21578 * 120.00013 * 355.99645 * 14 13 12 16 16 C 1.47576 * 119.99985 * 175.99850 * 14 13 12 17 17 C 1.39663 * 120.19260 * 108.45196 * 16 14 13 18 18 C 1.37824 * 119.91455 * 179.71632 * 17 16 14 19 19 C 1.38534 * 120.31296 * 0.56829 * 18 17 16 20 20 C 1.38071 * 120.38904 * 359.71274 * 19 18 17 21 21 C 1.38753 * 120.07538 * 0.02562 * 20 19 18 22 22 N 1.39675 * 120.15348 * 180.02562 * 21 20 19 23 23 C 1.36654 * 125.67901 * 130.04398 * 22 21 20 24 24 C 1.34802 * 108.19369 * 179.89010 * 23 22 21 25 25 C 1.40990 * 107.48676 * 0.36688 * 24 23 22 26 26 C 1.34814 * 107.48655 * 359.77000 * 25 24 23 27 27 C 1.43621 * 120.06321 * 282.49934 * 13 12 11 28 28 C 1.48864 * 118.94170 * 26.78995 * 9 7 2 29 29 H 0.97006 * 120.00172 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.76164 * 33.22580 * 10 9 7 31 31 H 1.08996 * 109.76575 * 153.94638 * 10 9 7 32 32 H 1.09000 * 109.00273 * 42.26728 * 11 10 9 33 33 H 1.08991 * 109.01013 * 161.13239 * 11 10 9 34 34 H 1.08995 * 109.32588 * 178.56551 * 12 11 10 35 35 H 1.09001 * 109.32108 * 298.20233 * 12 11 10 36 36 H 1.07997 * 120.04086 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.84895 * 180.25662 * 18 17 16 38 38 H 1.08005 * 119.80384 * 179.73900 * 19 18 17 39 39 H 1.08004 * 119.95752 * 179.97438 * 20 19 18 40 40 H 1.08003 * 125.90431 * 0.03665 * 23 22 21 41 41 H 1.07996 * 126.25770 * 180.15658 * 24 23 22 42 42 H 1.08002 * 126.25838 * 179.74883 * 25 24 23 43 43 H 1.07993 * 125.90449 * 179.97438 * 26 25 24 44 44 H 1.09000 * 108.87334 * 211.44362 * 27 13 12 45 45 H 1.08998 * 108.87450 * 329.97633 * 27 13 12 46 46 H 1.09004 * 109.47703 * 260.62246 * 28 9 7 47 47 H 1.09000 * 109.48015 * 20.65569 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4009 2.1023 1.3956 5 1 1.4994 2.6229 -0.7945 6 1 3.5928 1.4141 -0.6010 7 6 2.0102 -1.2022 0.0005 8 1 3.0538 -1.2230 0.2778 9 7 1.3717 -2.3615 -0.3505 10 6 1.8478 -3.6053 0.1829 11 6 2.9674 -4.1187 -0.7382 12 6 2.4301 -4.7397 -1.9592 13 7 1.5932 -3.7702 -2.7050 14 6 2.0856 -3.1587 -3.8006 15 8 3.2393 -3.3468 -4.1349 16 6 1.2243 -2.2609 -4.5943 17 6 1.4356 -0.8806 -4.5682 18 6 0.6316 -0.0479 -5.3163 19 6 -0.3939 -0.5724 -6.0860 20 6 -0.6178 -1.9344 -6.1167 21 6 0.1853 -2.7881 -5.3741 22 7 -0.0394 -4.1663 -5.4044 23 6 0.9093 -5.1238 -5.6291 24 6 0.3099 -6.3302 -5.5789 25 6 -1.0592 -6.1126 -5.3223 26 6 -1.2457 -4.7814 -5.2200 27 6 0.2579 -3.4818 -2.2615 28 6 0.2021 -2.2901 -1.2687 29 1 -0.4851 0.8401 -0.0004 30 1 2.2399 -3.4492 1.1879 31 1 1.0335 -4.3291 0.2132 32 1 3.6084 -3.2826 -1.0178 33 1 3.5613 -4.8560 -0.1981 34 1 3.2559 -5.0650 -2.5918 35 1 1.8223 -5.6027 -1.6874 36 1 2.2306 -0.4667 -3.9658 37 1 0.7985 1.0190 -5.2985 38 1 -1.0217 0.0881 -6.6658 39 1 -1.4196 -2.3358 -6.7189 40 1 1.9585 -4.9450 -5.8127 41 1 0.7901 -7.2880 -5.7142 42 1 -1.8198 -6.8734 -5.2257 43 1 -2.1859 -4.2866 -5.0263 44 1 -0.3588 -3.2474 -3.1291 45 1 -0.1485 -4.3651 -1.7689 46 1 -0.7192 -2.3393 -0.6882 47 1 0.2325 -1.3526 -1.8239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981869069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:35 Heat of formation + Delta-G solvation = 75.662695 kcal Electronic energy + Delta-G solvation = -31522.597406 eV Core-core repulsion = 27672.110615 eV Total energy + Delta-G solvation = -3850.486791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.78494 -41.14964 -39.57871 -38.53665 -36.00191 -34.58375 -34.03814 -32.86843 -32.19447 -29.93490 -29.74856 -29.24130 -27.31519 -25.52086 -25.19211 -24.03702 -23.19633 -21.57564 -21.27401 -21.07744 -20.37690 -19.21603 -18.78573 -18.05946 -17.74664 -16.97782 -16.80918 -16.35521 -15.88523 -15.80935 -15.56582 -15.20845 -15.16065 -14.85309 -14.56939 -14.49231 -14.44157 -14.05171 -13.92066 -13.71212 -13.37464 -13.20753 -13.15925 -12.96115 -12.91236 -12.88642 -12.56541 -12.47196 -12.39411 -12.14145 -11.82391 -11.76798 -11.48248 -11.04103 -10.55055 -10.49442 -10.10607 -9.63243 -9.25912 -9.13032 -8.66108 -7.88238 -5.31854 -0.18626 0.10684 1.31269 1.38106 1.41601 1.49650 1.50570 1.87877 2.05030 2.13601 2.48235 2.57166 3.23858 3.37353 3.65812 3.70336 3.94719 3.97635 4.04776 4.12414 4.22421 4.24342 4.27722 4.30973 4.43149 4.48597 4.53936 4.62287 4.63335 4.70660 4.77387 4.82442 4.87169 4.97852 5.06137 5.17944 5.20592 5.21633 5.33914 5.35150 5.38753 5.42942 5.53255 5.65664 5.68396 5.71310 6.03483 6.24132 6.36833 6.40448 6.50472 7.03784 7.15755 7.91616 8.32435 9.16608 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011823 B = 0.005530 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.787985 B = 5062.518857 C = 6240.564408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.049 0.951 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.153 4.153 12 C 0.129 3.871 13 N -0.564 5.564 14 C 0.566 3.434 15 O -0.586 6.586 16 C -0.137 4.137 17 C -0.082 4.082 18 C -0.116 4.116 19 C -0.075 4.075 20 C -0.117 4.117 21 C 0.136 3.864 22 N -0.405 5.405 23 C -0.028 4.028 24 C -0.192 4.192 25 C -0.194 4.194 26 C -0.011 4.011 27 C 0.102 3.898 28 C 0.180 3.820 29 H 0.251 0.749 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.161 0.839 43 H 0.185 0.815 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.021 0.979 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -8.083 -12.771 16.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.213 1.213 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.394 4.394 8 H 0.066 0.934 9 N -0.324 5.324 10 C 0.031 3.969 11 C -0.194 4.194 12 C 0.008 3.992 13 N -0.292 5.292 14 C 0.354 3.646 15 O -0.469 6.469 16 C -0.142 4.142 17 C -0.101 4.101 18 C -0.134 4.134 19 C -0.093 4.093 20 C -0.136 4.136 21 C 0.044 3.956 22 N -0.078 5.078 23 C -0.155 4.155 24 C -0.216 4.216 25 C -0.218 4.218 26 C -0.137 4.137 27 C -0.024 4.024 28 C 0.054 3.946 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.171 0.829 38 H 0.194 0.806 39 H 0.181 0.819 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.179 0.821 43 H 0.202 0.798 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.039 0.961 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.566 -7.811 -12.887 16.065 hybrid contribution 1.056 1.283 0.582 1.760 sum -4.510 -6.528 -12.305 14.642 Atomic orbital electron populations 1.70135 1.05949 1.25635 1.55209 1.25479 0.95857 1.00381 1.01187 0.85625 0.78190 0.81274 0.77590 1.21270 1.20879 1.20921 1.19242 0.92461 0.86802 1.40852 0.93354 1.43817 1.34580 1.02369 1.51620 1.20438 0.94548 0.87453 0.94430 1.21669 1.00159 1.00043 0.97545 1.20697 0.95118 0.90669 0.92680 1.47304 1.15417 1.41407 1.25102 1.18379 0.86251 0.79066 0.80893 1.90699 1.19051 1.64924 1.72178 1.19842 0.98917 0.94888 1.00513 1.21092 0.99580 0.91290 0.98188 1.21478 0.95018 1.01078 0.95864 1.21602 0.96239 0.94544 0.96928 1.21357 1.00308 0.93497 0.98447 1.17746 0.96658 0.82633 0.98545 1.41472 1.08938 1.02597 1.54818 1.21902 0.94398 0.88568 1.10660 1.21129 0.95201 0.96583 1.08678 1.21193 0.96593 0.95077 1.08973 1.22394 0.88960 0.93452 1.08887 1.21955 0.82515 0.99524 0.98407 1.21653 0.88611 0.94932 0.89369 0.94008 0.94337 0.92746 0.95394 0.89280 0.90947 0.88798 0.87540 0.82900 0.80576 0.81891 0.84515 0.83326 0.82140 0.79757 0.90779 0.90237 0.96057 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.30 11.20 21.65 0.24 -52.05 16 2 C -0.03 -1.80 4.86 84.86 0.41 -1.38 16 3 Si 0.94 44.87 29.59 68.60 2.03 46.90 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.26 -14.49 9.23 84.04 0.78 -13.71 16 8 H 0.05 2.74 7.89 -2.91 -0.02 2.72 16 9 N -0.60 -29.31 2.52 -697.39 -1.76 -31.07 16 10 C 0.16 6.41 5.63 87.21 0.49 6.90 16 11 C -0.15 -5.58 5.64 29.04 0.16 -5.42 16 12 C 0.13 4.37 5.68 84.23 0.48 4.85 16 13 N -0.56 -21.06 2.46 -834.26 -2.05 -23.11 16 14 C 0.57 22.96 4.91 86.71 0.43 23.38 16 15 O -0.59 -27.25 16.36 -3.96 -0.06 -27.32 16 16 C -0.14 -4.91 4.42 -19.99 -0.09 -5.00 16 17 C -0.08 -2.87 9.78 22.52 0.22 -2.65 16 18 C -0.12 -3.01 10.02 22.24 0.22 -2.79 16 19 C -0.07 -1.49 10.03 22.30 0.22 -1.26 16 20 C -0.12 -2.55 9.64 22.35 0.22 -2.33 16 21 C 0.14 3.93 4.67 38.49 0.18 4.11 16 22 N -0.40 -11.05 2.26 -345.94 -0.78 -11.83 16 23 C -0.03 -0.83 9.75 83.15 0.81 -0.02 16 24 C -0.19 -4.75 10.86 22.16 0.24 -4.51 16 25 C -0.19 -4.21 10.86 22.16 0.24 -3.97 16 26 C -0.01 -0.24 10.63 83.16 0.88 0.64 16 27 C 0.10 3.68 5.13 87.67 0.45 4.13 16 28 C 0.18 8.25 5.22 86.68 0.45 8.71 16 29 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 30 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 31 H 0.05 1.97 7.59 -2.39 -0.02 1.95 16 32 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.54 7.17 -2.39 -0.02 2.52 16 35 H 0.09 2.61 8.05 -2.39 -0.02 2.59 16 36 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.16 2.53 8.05 -2.91 -0.02 2.51 16 40 H 0.14 4.55 7.53 -2.91 -0.02 4.53 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 43 H 0.19 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.07 2.55 4.72 -2.39 -0.01 2.53 16 45 H 0.08 2.59 7.72 -2.39 -0.02 2.57 16 46 H 0.02 1.06 7.98 -2.38 -0.02 1.04 16 47 H 0.04 2.02 6.73 -2.39 -0.02 2.00 16 Total: -1.00 -70.49 376.83 5.38 -65.11 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.96 Total: 23.70 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.80 Total: 9.67 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -4.35 Total: -118.06 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.49 5.38 -65.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981869069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.772 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds