Wall clock time and date at job start Tue Mar 31 2020 22:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48504 * 109.47299 * 264.99186 * 3 2 1 5 5 H 1.48500 * 109.47229 * 24.99048 * 3 2 1 6 6 H 1.48504 * 109.47014 * 144.99176 * 3 2 1 7 7 C 1.38808 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99468 * 195.82212 * 7 2 1 9 9 N 1.36936 * 120.00446 * 15.82277 * 7 2 1 10 10 C 1.46898 * 120.68974 * 207.97065 * 9 7 2 11 11 C 1.52666 * 109.34379 * 235.31063 * 10 9 7 12 12 C 1.53181 * 109.43010 * 303.76871 * 11 10 9 13 13 C 1.52632 * 109.35114 * 58.92808 * 12 11 10 14 14 C 1.53463 * 113.68611 * 74.06534 * 13 12 11 15 15 N 1.47667 * 85.97131 * 91.17451 * 14 13 12 16 16 C 1.34772 * 134.45567 * 204.28960 * 15 14 13 17 17 O 1.21587 * 120.00462 * 174.52457 * 16 15 14 18 18 C 1.47583 * 119.99884 * 354.52715 * 16 15 14 19 19 C 1.40234 * 119.83357 * 173.32316 * 18 16 15 20 20 C 1.36202 * 120.37894 * 179.73594 * 19 18 16 21 21 C 1.39914 * 119.95851 * 0.55315 * 20 19 18 22 22 C 1.46258 * 133.83913 * 179.69693 * 21 20 19 23 23 C 1.34458 * 107.03229 * 180.02562 * 22 21 20 24 24 N 1.36558 * 109.97750 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.07044 * 180.02562 * 24 23 22 26 26 C 1.37827 * 109.86264 * 359.97438 * 24 23 22 27 27 C 1.38681 * 133.37332 * 179.97438 * 26 24 23 28 28 C 1.47674 * 91.09485 * 24.28657 * 15 14 13 29 29 C 1.47108 * 120.68807 * 28.24453 * 9 7 2 30 30 H 0.97007 * 119.99692 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.53469 * 355.23630 * 10 9 7 32 32 H 1.08999 * 109.53560 * 115.47436 * 10 9 7 33 33 H 1.08996 * 109.56212 * 183.71777 * 11 10 9 34 34 H 1.09003 * 109.34823 * 63.69226 * 11 10 9 35 35 H 1.08999 * 109.49074 * 298.96703 * 12 11 10 36 36 H 1.08995 * 109.49856 * 178.89534 * 12 11 10 37 37 H 1.09000 * 113.79343 * 205.44038 * 14 13 12 38 38 H 1.09000 * 113.78658 * 336.90769 * 14 13 12 39 39 H 1.08005 * 119.81011 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.02064 * 180.26152 * 20 19 18 41 41 H 1.07995 * 126.48144 * 0.02750 * 22 21 20 42 42 H 1.08000 * 125.01161 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.17119 * 0.04405 * 27 26 24 44 44 H 1.08996 * 113.79458 * 221.44985 * 28 15 14 45 45 H 1.09004 * 113.79139 * 89.97302 * 28 15 14 46 46 H 1.08998 * 109.64391 * 248.30740 * 29 9 7 47 47 H 1.09002 * 109.64326 * 8.92509 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9853 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4730 0.8032 7 6 2.0101 -1.2022 -0.0005 8 1 3.0595 -1.2200 0.2545 9 7 1.3644 -2.3655 -0.3244 10 6 1.8188 -3.6519 0.2202 11 6 2.0942 -4.6185 -0.9290 12 6 0.8360 -4.7558 -1.7919 13 6 0.4414 -3.3841 -2.3326 14 6 1.3534 -2.8798 -3.4591 15 7 0.4018 -3.5324 -4.3805 16 6 0.4861 -4.0227 -5.6330 17 8 -0.4607 -4.6085 -6.1216 18 6 1.7277 -3.8487 -6.4115 19 6 1.8643 -4.4785 -7.6570 20 6 3.0032 -4.3212 -8.3872 21 6 4.0494 -3.5366 -7.8896 22 6 5.3726 -3.1733 -8.3960 23 6 5.9450 -2.3831 -7.4708 24 7 5.0968 -2.2118 -6.4144 25 1 5.2894 -1.6813 -5.6254 26 6 3.9259 -2.9040 -6.6368 27 6 2.7607 -3.0652 -5.9023 28 6 -0.6795 -3.4326 -3.3796 29 6 0.2049 -2.3536 -1.2296 30 1 -0.4850 0.8401 0.0004 31 1 2.7327 -3.5019 0.7950 32 1 1.0452 -4.0683 0.8653 33 1 2.3680 -5.5941 -0.5275 34 1 2.9121 -4.2326 -1.5374 35 1 0.0222 -5.1563 -1.1873 36 1 1.0374 -5.4305 -2.6239 37 1 1.3799 -1.7940 -3.5506 38 1 2.3450 -3.3324 -3.4578 39 1 1.0603 -5.0888 -8.0411 40 1 3.1006 -4.8055 -9.3476 41 1 5.8075 -3.4814 -9.3352 42 1 6.9305 -1.9487 -7.5510 43 1 2.6544 -2.5853 -4.9407 44 1 -1.3029 -4.3244 -3.3153 45 1 -1.2579 -2.5112 -3.4475 46 1 -0.6965 -2.6122 -0.6739 47 1 0.0949 -1.3631 -1.6713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982036293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:05 Heat of formation + Delta-G solvation = 90.022236 kcal Electronic energy + Delta-G solvation = -29804.564967 eV Core-core repulsion = 25954.700852 eV Total energy + Delta-G solvation = -3849.864114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40799 -40.46938 -38.38014 -36.46540 -35.80170 -32.95751 -32.29226 -30.50126 -30.06718 -29.57181 -28.90730 -26.17685 -25.84646 -25.42546 -23.28808 -22.35828 -22.19409 -20.86485 -20.62925 -19.29229 -18.27677 -17.63836 -17.09090 -16.82315 -16.05454 -15.65569 -15.51070 -14.75321 -14.59663 -14.35317 -14.03163 -13.95854 -13.90551 -13.78792 -13.51390 -13.22015 -13.08776 -12.93140 -12.59071 -12.37988 -11.91633 -11.86561 -11.75516 -11.54427 -11.25300 -11.15614 -11.01735 -10.84945 -10.52998 -10.34655 -10.21720 -10.00018 -9.89664 -9.76914 -9.51672 -9.39386 -8.58190 -8.48085 -8.26737 -7.88046 -6.75677 -5.88897 -3.31432 0.73055 1.43932 2.45014 2.93100 3.08025 3.15200 3.28360 3.36090 3.37831 3.97135 4.38749 4.50058 4.62410 4.65285 4.75250 5.06601 5.16374 5.20312 5.26584 5.32340 5.38539 5.41663 5.51291 5.55232 5.69853 5.71086 5.75497 5.78701 5.82240 5.91992 5.93276 6.02340 6.12827 6.20476 6.29172 6.34587 6.48016 6.50142 6.52801 6.56891 6.58362 6.69974 6.79739 6.92823 6.99401 7.18095 7.33451 7.48473 7.70001 7.97420 8.34024 8.38961 9.11124 9.74073 10.31977 11.19951 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.003854 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.975323 B = 7262.716622 C = 8654.107234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.084 4.084 13 C -0.111 4.111 14 C 0.115 3.885 15 N -0.635 5.635 16 C 0.577 3.423 17 O -0.550 6.550 18 C -0.108 4.108 19 C -0.091 4.091 20 C -0.086 4.086 21 C -0.089 4.089 22 C -0.215 4.215 23 C 0.060 3.940 24 N -0.591 5.591 25 H 0.419 0.581 26 C 0.082 3.918 27 C -0.097 4.097 28 C 0.117 3.883 29 C 0.191 3.809 30 H 0.255 0.745 31 H 0.053 0.947 32 H 0.018 0.982 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.142 0.858 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.027 0.973 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.092 -6.338 -12.518 16.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.172 4.172 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.007 4.007 15 N -0.369 5.369 16 C 0.369 3.631 17 O -0.430 6.430 18 C -0.113 4.113 19 C -0.110 4.110 20 C -0.105 4.105 21 C -0.094 4.094 22 C -0.240 4.240 23 C -0.067 4.067 24 N -0.194 5.194 25 H 0.256 0.744 26 C -0.025 4.025 27 C -0.117 4.117 28 C -0.005 4.005 29 C 0.064 3.936 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.164 0.836 42 H 0.188 0.812 43 H 0.159 0.841 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.045 0.955 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.545 -6.485 -12.824 16.719 hybrid contribution 0.648 1.295 0.307 1.480 sum 9.193 -5.190 -12.517 16.374 Atomic orbital electron populations 1.69998 1.05166 1.25630 1.53811 1.25035 0.95275 0.98266 1.00804 0.86355 0.79144 0.83806 0.77726 1.21509 1.21678 1.20513 1.19159 0.92209 0.84508 1.42385 0.91667 1.44007 1.34443 1.01735 1.51068 1.20794 0.97551 0.86916 0.92896 1.21937 0.97192 0.99152 0.98957 1.21101 0.98210 0.94369 0.98454 1.22843 0.94099 0.98566 0.95796 1.23387 0.94317 0.98040 0.84931 1.50090 1.15724 1.58391 1.12682 1.17834 0.87161 0.78748 0.79407 1.90738 1.39589 1.43311 1.69343 1.19573 0.94009 1.01347 0.96322 1.20681 0.97893 0.99312 0.93165 1.20167 0.91999 0.98519 0.99796 1.19411 0.95409 1.00141 0.94420 1.21701 0.94611 1.06133 1.01553 1.21889 0.96138 1.00785 0.87925 1.41826 1.13274 1.44489 1.19813 0.74370 1.18112 0.88878 0.98690 0.96774 1.20894 0.90620 0.99997 1.00233 1.23251 0.91939 1.01971 0.83354 1.20682 0.89210 0.95978 0.87697 0.93496 0.92892 0.96381 0.92928 0.92581 0.91966 0.93200 0.89156 0.90273 0.84826 0.85546 0.83567 0.81153 0.84092 0.90437 0.89392 0.95524 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 11.18 55.49 0.62 -23.79 16 2 C 0.01 0.13 4.94 -17.43 -0.09 0.05 16 3 Si 0.90 20.33 29.58 -169.99 -5.03 15.30 16 4 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.25 -6.35 9.59 -15.06 -0.14 -6.50 16 8 H 0.07 1.62 7.88 -52.48 -0.41 1.21 16 9 N -0.59 -13.35 3.01 -172.75 -0.52 -13.87 16 10 C 0.14 2.79 6.43 -4.00 -0.03 2.76 16 11 C -0.13 -2.13 5.99 -26.81 -0.16 -2.29 16 12 C -0.08 -1.33 5.02 -26.83 -0.13 -1.47 16 13 C -0.11 -1.88 0.87 -154.42 -0.13 -2.02 16 14 C 0.12 1.84 5.17 -3.17 -0.02 1.83 16 15 N -0.64 -10.53 3.44 -181.65 -0.62 -11.16 16 16 C 0.58 10.19 7.97 -12.45 -0.10 10.09 16 17 O -0.55 -11.17 17.07 5.29 0.09 -11.08 16 18 C -0.11 -1.67 5.87 -104.95 -0.62 -2.29 16 19 C -0.09 -1.26 9.51 -39.56 -0.38 -1.64 16 20 C -0.09 -1.05 10.03 -39.69 -0.40 -1.45 16 21 C -0.09 -1.11 6.37 -105.04 -0.67 -1.78 16 22 C -0.21 -2.11 11.08 -37.70 -0.42 -2.53 16 23 C 0.06 0.51 11.81 -16.78 -0.20 0.31 16 24 N -0.59 -5.88 6.07 -10.68 -0.06 -5.95 16 25 H 0.42 3.25 8.96 -40.82 -0.37 2.89 16 26 C 0.08 1.06 7.26 -84.00 -0.61 0.45 16 27 C -0.10 -1.36 9.11 -39.03 -0.36 -1.72 16 28 C 0.12 1.91 7.98 -3.17 -0.03 1.89 16 29 C 0.19 4.04 4.41 -3.82 -0.02 4.02 16 30 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.91 7.37 -51.93 -0.38 0.53 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.78 8.02 -51.93 -0.42 0.36 16 37 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 38 H 0.08 1.20 6.09 -51.93 -0.32 0.89 16 39 H 0.13 1.81 7.64 -52.48 -0.40 1.41 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.14 1.94 4.00 -52.49 -0.21 1.73 16 44 H 0.08 1.22 8.09 -51.93 -0.42 0.80 16 45 H 0.09 1.41 8.09 -51.93 -0.42 0.99 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 2.13 6.02 -51.93 -0.31 1.81 16 LS Contribution 374.09 15.07 5.64 5.64 Total: -1.00 -30.94 374.09 -10.95 -41.88 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.57 Total: 5.31 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.49 Total: -2.29 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.59 Total: -54.76 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.94 -10.95 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982036293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.905 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds