Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00049 * 2 1 4 4 H 1.48504 * 109.47299 * 264.99186 * 3 2 1 5 5 H 1.48500 * 109.47229 * 24.99048 * 3 2 1 6 6 H 1.48504 * 109.47014 * 144.99176 * 3 2 1 7 7 C 1.38808 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99468 * 195.82212 * 7 2 1 9 9 N 1.36936 * 120.00446 * 15.82277 * 7 2 1 10 10 C 1.46898 * 120.68974 * 207.97065 * 9 7 2 11 11 C 1.52666 * 109.34379 * 235.31063 * 10 9 7 12 12 C 1.53181 * 109.43010 * 303.76871 * 11 10 9 13 13 C 1.52632 * 109.35114 * 58.92808 * 12 11 10 14 14 C 1.53463 * 113.68611 * 74.06534 * 13 12 11 15 15 N 1.47667 * 85.97131 * 91.17451 * 14 13 12 16 16 C 1.34772 * 134.45567 * 204.28960 * 15 14 13 17 17 O 1.21587 * 120.00462 * 174.52457 * 16 15 14 18 18 C 1.47583 * 119.99884 * 354.52715 * 16 15 14 19 19 C 1.40234 * 119.83357 * 173.32316 * 18 16 15 20 20 C 1.36202 * 120.37894 * 179.73594 * 19 18 16 21 21 C 1.39914 * 119.95851 * 0.55315 * 20 19 18 22 22 C 1.46258 * 133.83913 * 179.69693 * 21 20 19 23 23 C 1.34458 * 107.03229 * 180.02562 * 22 21 20 24 24 N 1.36558 * 109.97750 * 0.02562 * 23 22 21 25 25 H 0.96997 * 125.07044 * 180.02562 * 24 23 22 26 26 C 1.37827 * 109.86264 * 359.97438 * 24 23 22 27 27 C 1.38681 * 133.37332 * 179.97438 * 26 24 23 28 28 C 1.47674 * 91.09485 * 24.28657 * 15 14 13 29 29 C 1.47108 * 120.68807 * 28.24453 * 9 7 2 30 30 H 0.97007 * 119.99692 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.53469 * 355.23630 * 10 9 7 32 32 H 1.08999 * 109.53560 * 115.47436 * 10 9 7 33 33 H 1.08996 * 109.56212 * 183.71777 * 11 10 9 34 34 H 1.09003 * 109.34823 * 63.69226 * 11 10 9 35 35 H 1.08999 * 109.49074 * 298.96703 * 12 11 10 36 36 H 1.08995 * 109.49856 * 178.89534 * 12 11 10 37 37 H 1.09000 * 113.79343 * 205.44038 * 14 13 12 38 38 H 1.09000 * 113.78658 * 336.90769 * 14 13 12 39 39 H 1.08005 * 119.81011 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.02064 * 180.26152 * 20 19 18 41 41 H 1.07995 * 126.48144 * 0.02750 * 22 21 20 42 42 H 1.08000 * 125.01161 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.17119 * 0.04405 * 27 26 24 44 44 H 1.08996 * 113.79458 * 221.44985 * 28 15 14 45 45 H 1.09004 * 113.79139 * 89.97302 * 28 15 14 46 46 H 1.08998 * 109.64391 * 248.30740 * 29 9 7 47 47 H 1.09002 * 109.64326 * 8.92509 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6036 1.9853 -1.3947 5 1 1.3987 2.6809 0.5915 6 1 3.4908 1.4730 0.8032 7 6 2.0101 -1.2022 -0.0005 8 1 3.0595 -1.2200 0.2545 9 7 1.3644 -2.3655 -0.3244 10 6 1.8188 -3.6519 0.2202 11 6 2.0942 -4.6185 -0.9290 12 6 0.8360 -4.7558 -1.7919 13 6 0.4414 -3.3841 -2.3326 14 6 1.3534 -2.8798 -3.4591 15 7 0.4018 -3.5324 -4.3805 16 6 0.4861 -4.0227 -5.6330 17 8 -0.4607 -4.6085 -6.1216 18 6 1.7277 -3.8487 -6.4115 19 6 1.8643 -4.4785 -7.6570 20 6 3.0032 -4.3212 -8.3872 21 6 4.0494 -3.5366 -7.8896 22 6 5.3726 -3.1733 -8.3960 23 6 5.9450 -2.3831 -7.4708 24 7 5.0968 -2.2118 -6.4144 25 1 5.2894 -1.6813 -5.6254 26 6 3.9259 -2.9040 -6.6368 27 6 2.7607 -3.0652 -5.9023 28 6 -0.6795 -3.4326 -3.3796 29 6 0.2049 -2.3536 -1.2296 30 1 -0.4850 0.8401 0.0004 31 1 2.7327 -3.5019 0.7950 32 1 1.0452 -4.0683 0.8653 33 1 2.3680 -5.5941 -0.5275 34 1 2.9121 -4.2326 -1.5374 35 1 0.0222 -5.1563 -1.1873 36 1 1.0374 -5.4305 -2.6239 37 1 1.3799 -1.7940 -3.5506 38 1 2.3450 -3.3324 -3.4578 39 1 1.0603 -5.0888 -8.0411 40 1 3.1006 -4.8055 -9.3476 41 1 5.8075 -3.4814 -9.3352 42 1 6.9305 -1.9487 -7.5510 43 1 2.6544 -2.5853 -4.9407 44 1 -1.3029 -4.3244 -3.3153 45 1 -1.2579 -2.5112 -3.4475 46 1 -0.6965 -2.6122 -0.6739 47 1 0.0949 -1.3631 -1.6713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982036293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = 73.077096 kcal Electronic energy + Delta-G solvation = -29805.299763 eV Core-core repulsion = 25954.700852 eV Total energy + Delta-G solvation = -3850.598911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.36270 -41.74767 -39.73183 -37.56455 -37.34360 -34.65603 -33.30169 -31.96409 -31.63936 -30.50757 -29.94142 -27.55531 -27.27608 -27.13122 -24.30362 -23.97261 -23.27224 -22.09398 -21.64250 -20.52760 -19.57115 -18.77493 -18.56170 -18.27077 -17.14891 -16.99735 -16.86288 -16.42335 -15.77056 -15.54948 -15.34750 -15.28873 -15.10642 -15.01437 -14.76063 -14.45947 -14.29909 -14.10589 -13.92184 -13.78943 -13.43171 -13.20024 -12.85810 -12.80090 -12.70928 -12.57860 -12.55907 -12.23134 -12.15820 -11.98101 -11.74700 -11.58254 -11.30873 -11.01844 -10.84740 -10.78823 -10.49812 -9.80682 -9.27544 -8.72413 -8.62013 -7.83514 -5.27892 -0.28605 0.45333 1.48632 1.50975 1.58249 1.58395 1.74312 2.01561 2.20687 2.53622 2.90963 3.22083 3.33794 3.43879 3.65261 3.83305 3.85281 3.95018 4.05819 4.17242 4.25347 4.29824 4.35777 4.39094 4.40537 4.47629 4.55347 4.62391 4.64241 4.64602 4.74371 4.81798 4.99475 5.01008 5.01678 5.04407 5.15402 5.26557 5.27373 5.31038 5.41889 5.50894 5.56639 5.66670 5.68147 5.74927 5.75881 6.09391 6.42606 6.61742 6.64304 7.03305 7.19177 7.89714 8.42961 9.23087 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.003854 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.975323 B = 7262.716622 C = 8654.107234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.121 4.121 12 C -0.079 4.079 13 C -0.103 4.103 14 C 0.127 3.873 15 N -0.633 5.633 16 C 0.575 3.425 17 O -0.585 6.585 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.082 4.082 21 C -0.100 4.100 22 C -0.230 4.230 23 C 0.079 3.921 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.061 3.939 27 C -0.096 4.096 28 C 0.116 3.884 29 C 0.205 3.795 30 H 0.248 0.752 31 H 0.054 0.946 32 H 0.013 0.987 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.215 0.785 43 H 0.139 0.861 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.000 1.000 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.399 -6.728 -13.787 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.239 4.239 3 Si 0.787 3.213 4 H -0.210 1.210 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.160 4.160 12 C -0.116 4.116 13 C -0.105 4.105 14 C 0.005 3.995 15 N -0.365 5.365 16 C 0.368 3.632 17 O -0.468 6.468 18 C -0.138 4.138 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.106 4.106 22 C -0.255 4.255 23 C -0.049 4.049 24 N -0.191 5.191 25 H 0.268 0.732 26 C -0.046 4.046 27 C -0.117 4.117 28 C -0.007 4.007 29 C 0.078 3.922 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.188 0.812 42 H 0.232 0.768 43 H 0.156 0.844 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.018 0.982 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.890 -6.888 -14.076 19.671 hybrid contribution -0.273 1.427 0.712 1.618 sum 11.617 -5.461 -13.364 18.531 Atomic orbital electron populations 1.70152 1.06503 1.25671 1.55648 1.25676 0.95857 1.00997 1.01411 0.85428 0.78039 0.80097 0.77751 1.20987 1.22861 1.19530 1.19457 0.92470 0.85499 1.41058 0.91382 1.44252 1.34467 1.02410 1.51717 1.20938 0.97234 0.86116 0.94173 1.21809 0.97047 0.99554 0.97552 1.21078 0.98410 0.93393 0.98761 1.22649 0.94982 0.98277 0.94613 1.23275 0.94648 0.97601 0.83973 1.50054 1.15740 1.58103 1.12640 1.18242 0.87630 0.77978 0.79384 1.90703 1.40987 1.45044 1.70054 1.19459 0.93662 1.03601 0.97118 1.20724 0.98729 0.99834 0.93139 1.20429 0.91155 0.98049 1.00444 1.19859 0.96617 0.99636 0.94447 1.22074 0.93485 1.06830 1.03075 1.22656 0.97006 0.98929 0.86282 1.41975 1.12503 1.43913 1.20698 0.73205 1.18202 0.89521 0.99714 0.97147 1.20812 0.90989 0.99673 1.00234 1.23252 0.91989 1.02262 0.83183 1.20355 0.87988 0.95636 0.88180 0.94244 0.92726 0.96915 0.90034 0.92380 0.91682 0.92213 0.90016 0.88910 0.85327 0.82917 0.81190 0.76799 0.84357 0.89749 0.89629 0.98167 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.07 11.18 21.65 0.24 -51.83 16 2 C -0.04 -2.27 4.94 84.86 0.42 -1.85 16 3 Si 0.96 42.02 29.58 68.60 2.03 44.05 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.25 -12.80 9.59 84.03 0.81 -11.99 16 8 H 0.07 3.33 7.88 -2.91 -0.02 3.31 16 9 N -0.61 -27.53 3.01 -700.47 -2.11 -29.64 16 10 C 0.14 5.29 6.43 86.19 0.55 5.85 16 11 C -0.12 -3.61 5.99 30.54 0.18 -3.42 16 12 C -0.08 -2.41 5.02 30.53 0.15 -2.25 16 13 C -0.10 -3.51 0.87 -52.03 -0.05 -3.56 16 14 C 0.13 4.05 5.17 86.31 0.45 4.50 16 15 N -0.63 -21.22 3.44 -846.88 -2.91 -24.13 16 16 C 0.57 20.70 7.97 86.71 0.69 21.39 16 17 O -0.59 -24.47 17.07 -3.99 -0.07 -24.54 16 18 C -0.13 -4.18 5.87 -20.07 -0.12 -4.30 16 19 C -0.10 -2.91 9.51 22.28 0.21 -2.70 16 20 C -0.08 -1.89 10.03 22.20 0.22 -1.67 16 21 C -0.10 -2.28 6.37 -20.14 -0.13 -2.41 16 22 C -0.23 -3.68 11.08 23.49 0.26 -3.42 16 23 C 0.08 0.99 11.81 83.09 0.98 1.97 16 24 N -0.59 -9.92 6.07 -187.71 -1.14 -11.06 16 25 H 0.43 5.41 8.96 -92.71 -0.83 4.58 16 26 C 0.06 1.48 7.26 38.96 0.28 1.76 16 27 C -0.10 -2.66 9.11 22.63 0.21 -2.46 16 28 C 0.12 3.85 7.98 86.30 0.69 4.54 16 29 C 0.20 8.92 4.41 86.20 0.38 9.30 16 30 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 31 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 32 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.73 7.37 -2.39 -0.02 1.72 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.75 8.02 -2.39 -0.02 1.73 16 37 H 0.08 2.77 7.88 -2.39 -0.02 2.75 16 38 H 0.09 2.73 6.09 -2.39 -0.01 2.71 16 39 H 0.13 3.60 7.64 -2.91 -0.02 3.58 16 40 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 43 H 0.14 3.75 4.00 -2.91 -0.01 3.74 16 44 H 0.08 2.69 8.09 -2.39 -0.02 2.67 16 45 H 0.09 2.87 8.09 -2.38 -0.02 2.85 16 46 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.06 3.01 6.02 -2.39 -0.01 2.99 16 Total: -1.00 -68.38 374.09 2.42 -65.97 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.17 Total: 21.92 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 6.20 Total: 9.26 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -5.91 Total: -116.66 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.07 Total: -24.54 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -68.38 2.42 -65.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982036293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.045 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds