Wall clock time and date at job start Tue Mar 31 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99593 * 2 1 4 4 H 1.48493 * 109.47519 * 272.75780 * 3 2 1 5 5 H 1.48499 * 109.46962 * 32.76004 * 3 2 1 6 6 H 1.48504 * 109.46809 * 152.75617 * 3 2 1 7 7 C 1.38814 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99740 * 349.07671 * 7 2 1 9 9 N 1.36935 * 120.00112 * 169.08170 * 7 2 1 10 10 C 1.46972 * 120.59146 * 330.06494 * 9 7 2 11 11 C 1.53368 * 108.63081 * 235.20597 * 10 9 7 12 12 N 1.46960 * 108.64128 * 310.57719 * 11 10 9 13 13 C 1.34778 * 120.59607 * 235.21199 * 12 11 10 14 14 O 1.21591 * 119.99973 * 11.00333 * 13 12 11 15 15 N 1.34776 * 119.99950 * 191.28546 * 13 12 11 16 16 C 1.46966 * 120.59382 * 21.97369 * 15 13 12 17 17 C 1.53803 * 108.40223 * 124.75635 * 16 15 13 18 18 N 1.46965 * 108.57826 * 49.63589 * 17 16 15 19 19 C 1.34779 * 120.59691 * 124.62963 * 18 17 16 20 20 O 1.21347 * 119.99945 * 186.62914 * 19 18 17 21 21 C 1.49453 * 119.99747 * 6.62088 * 19 18 17 22 22 N 1.34774 * 119.99833 * 186.34603 * 21 19 18 23 23 O 1.21354 * 119.99979 * 6.34758 * 21 19 18 24 24 C 1.46965 * 118.81319 * 304.64691 * 18 17 16 25 25 C 1.46965 * 120.59448 * 202.24975 * 15 13 12 26 26 C 1.46960 * 118.80920 * 55.47696 * 12 11 10 27 27 C 1.46959 * 120.59532 * 150.04511 * 9 7 2 28 28 H 0.96996 * 120.00378 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.60890 * 115.46265 * 10 9 7 30 30 H 1.09002 * 109.74791 * 355.03195 * 10 9 7 31 31 H 1.09010 * 109.60751 * 190.82981 * 11 10 9 32 32 H 1.09007 * 109.60970 * 70.32659 * 11 10 9 33 33 H 1.08997 * 109.60764 * 244.54316 * 16 15 13 34 34 H 1.09004 * 109.61181 * 5.04549 * 16 15 13 35 35 H 1.09002 * 109.74468 * 289.85169 * 17 16 15 36 36 H 1.09002 * 109.67894 * 169.38213 * 17 16 15 37 37 H 0.96998 * 119.99976 * 359.97438 * 22 21 19 38 38 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 39 39 H 1.09001 * 109.61171 * 295.48170 * 24 18 17 40 40 H 1.08996 * 109.75166 * 175.05486 * 24 18 17 41 41 H 1.09003 * 109.60540 * 354.94613 * 25 15 13 42 42 H 1.08994 * 109.60667 * 115.46172 * 25 15 13 43 43 H 1.09003 * 109.61155 * 64.26998 * 26 12 11 44 44 H 1.09005 * 109.61038 * 184.78272 * 26 12 11 45 45 H 1.08995 * 109.61090 * 244.53557 * 27 9 7 46 46 H 1.08998 * 109.61085 * 4.88039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4393 2.0802 -1.3984 5 1 1.4778 2.6351 0.7576 6 1 3.5756 1.4241 0.6410 7 6 2.0103 -1.2021 -0.0005 8 1 1.4850 -2.1290 0.1763 9 7 3.3611 -1.2127 -0.2252 10 6 3.9867 -0.1865 -1.0711 11 6 4.7719 -0.8846 -2.1884 12 7 5.6220 -1.9220 -1.5877 13 6 6.9515 -1.9323 -1.8087 14 8 7.4873 -0.9778 -2.3381 15 7 7.6862 -3.0032 -1.4482 16 6 7.0546 -4.3183 -1.2709 17 6 7.7841 -5.3322 -2.1683 18 7 9.2302 -5.2045 -1.9396 19 6 9.9648 -6.2751 -1.5783 20 8 11.1317 -6.1361 -1.2756 21 6 9.3423 -7.6335 -1.5503 22 7 10.0366 -8.6832 -1.0681 23 8 8.2116 -7.7913 -1.9619 24 6 9.8609 -3.8882 -2.1116 25 6 9.1324 -2.8754 -1.2196 26 6 4.9956 -2.9513 -0.7463 27 6 4.2112 -2.2500 0.3757 28 1 -0.4850 0.8400 0.0004 29 1 4.6653 0.4190 -0.4703 30 1 3.2172 0.4503 -1.5076 31 1 5.3951 -0.1563 -2.7076 32 1 4.0773 -1.3432 -2.8923 33 1 7.1345 -4.6248 -0.2280 34 1 6.0047 -4.2617 -1.5586 35 1 7.5596 -5.1261 -3.2148 36 1 7.4620 -6.3429 -1.9173 37 1 10.9404 -8.5570 -0.7395 38 1 9.6326 -9.5649 -1.0503 39 1 9.7843 -3.5792 -3.1541 40 1 10.9104 -3.9420 -1.8222 41 1 9.4550 -1.8657 -1.4735 42 1 9.3568 -3.0816 -0.1731 43 1 4.3166 -3.5537 -1.3497 44 1 5.7666 -3.5883 -0.3126 45 1 4.9058 -1.7915 1.0794 46 1 3.5883 -2.9766 0.8973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985829822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:46 Heat of formation + Delta-G solvation = 16.477597 kcal Electronic energy + Delta-G solvation = -31044.791182 eV Core-core repulsion = 26780.888670 eV Total energy + Delta-G solvation = -4263.902512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.44942 -40.48294 -38.89418 -37.72878 -37.00199 -34.90196 -34.24285 -33.64446 -31.92353 -31.41224 -30.55573 -28.67655 -26.99372 -25.36775 -24.87917 -23.39272 -23.14897 -22.11808 -20.98845 -20.35454 -19.44152 -18.34694 -17.69714 -17.15607 -16.76834 -16.45646 -16.27249 -16.06563 -15.84796 -15.59330 -15.28806 -14.91920 -14.72030 -14.37110 -14.28842 -14.15239 -13.96721 -13.69869 -13.42018 -12.94259 -12.75061 -12.50022 -12.43418 -12.10373 -11.95592 -11.64805 -11.60478 -11.44418 -10.98025 -10.83850 -10.45079 -10.41933 -10.16059 -10.04550 -9.85098 -9.62714 -9.50477 -9.49832 -8.91520 -8.57629 -8.22728 -6.95726 -5.98285 -3.42707 0.92324 1.93442 2.60881 2.70973 3.16117 3.25133 3.28097 3.45425 3.46301 3.78978 3.95665 4.46263 4.49205 4.57609 4.78807 4.87169 4.90620 5.03372 5.14198 5.27845 5.33211 5.39839 5.46828 5.53606 5.57117 5.65444 5.67916 5.77642 5.84912 5.93414 6.05315 6.15616 6.19012 6.33592 6.39314 6.40726 6.48683 6.67627 6.72643 6.82465 7.09152 7.27134 7.51598 7.89394 8.00609 8.27289 8.66396 8.84614 9.64197 10.01060 11.17343 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.002818 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.901629 B = 9933.262012 C =10755.370646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.023 3.977 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.263 4.263 8 H 0.088 0.912 9 N -0.607 5.607 10 C 0.111 3.889 11 C 0.113 3.887 12 N -0.613 5.613 13 C 0.712 3.288 14 O -0.592 6.592 15 N -0.641 5.641 16 C 0.079 3.921 17 C 0.046 3.954 18 N -0.575 5.575 19 C 0.506 3.494 20 O -0.524 6.524 21 C 0.517 3.483 22 N -0.819 5.819 23 O -0.509 6.509 24 C 0.094 3.906 25 C 0.122 3.878 26 C 0.062 3.938 27 C 0.137 3.863 28 H 0.264 0.736 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.156 0.844 37 H 0.415 0.585 38 H 0.412 0.588 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.027 0.973 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.964 -16.486 -2.508 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.724 3.276 4 H -0.216 1.216 5 H -0.233 1.233 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.012 4.012 12 N -0.350 5.350 13 C 0.416 3.584 14 O -0.470 6.470 15 N -0.380 5.380 16 C -0.044 4.044 17 C -0.076 4.076 18 N -0.308 5.308 19 C 0.288 3.712 20 O -0.401 6.401 21 C 0.297 3.703 22 N -0.384 5.384 23 O -0.386 6.386 24 C -0.029 4.029 25 C -0.002 4.002 26 C -0.062 4.062 27 C 0.010 3.990 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.172 0.828 37 H 0.245 0.755 38 H 0.245 0.755 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.952 -15.667 -2.925 26.325 hybrid contribution 0.509 0.667 0.131 0.850 sum 21.461 -14.999 -2.794 26.332 Atomic orbital electron populations 1.69741 1.05619 1.26618 1.53689 1.25340 0.95342 0.97831 0.99105 0.86887 0.79711 0.83989 0.77008 1.21591 1.23320 1.19175 1.18937 0.80747 0.94222 1.45249 0.89459 1.44256 1.04555 1.30370 1.53943 1.21853 0.95799 0.92161 0.91725 1.22142 0.92587 0.90126 0.96307 1.47233 1.05065 1.30967 1.51692 1.15875 0.81413 0.82415 0.78730 1.90860 1.70916 1.36243 1.48951 1.47080 1.07766 1.07757 1.75399 1.23011 0.99495 0.82289 0.99593 1.23699 0.77811 1.05173 1.00935 1.47944 1.09840 1.08111 1.64941 1.19973 0.86530 0.85693 0.79045 1.90765 1.16335 1.85579 1.47424 1.20180 0.85671 0.86544 0.77945 1.43557 1.20231 1.10721 1.63917 1.90504 1.17844 1.83884 1.46394 1.22220 0.98615 0.80882 1.01141 1.21754 0.79007 1.00719 0.98698 1.23311 0.97625 0.91084 0.94141 1.21388 0.93128 0.91966 0.92489 0.92649 0.94583 0.90330 0.89701 0.91483 0.90890 0.86096 0.90582 0.82812 0.75463 0.75484 0.90060 0.87683 0.87675 0.91388 0.91034 0.88402 0.95535 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 2 C 0.02 0.65 5.39 -17.43 -0.09 0.55 16 3 Si 0.89 22.40 24.27 -169.99 -4.13 18.27 16 4 H -0.29 -6.99 6.72 56.52 0.38 -6.61 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 6 H -0.27 -6.59 5.85 56.52 0.33 -6.26 16 7 C -0.26 -7.11 10.10 -15.06 -0.15 -7.26 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -13.93 2.76 -171.77 -0.47 -14.40 16 10 C 0.11 2.42 4.26 -3.59 -0.02 2.40 16 11 C 0.11 2.11 6.60 -3.60 -0.02 2.08 16 12 N -0.61 -10.28 2.91 -177.94 -0.52 -10.80 16 13 C 0.71 11.74 7.91 -86.92 -0.69 11.06 16 14 O -0.59 -11.63 15.42 5.29 0.08 -11.55 16 15 N -0.64 -8.01 2.87 -181.84 -0.52 -8.54 16 16 C 0.08 0.78 4.48 -3.37 -0.02 0.77 16 17 C 0.05 0.42 6.26 -3.37 -0.02 0.40 16 18 N -0.58 -5.45 2.95 -172.72 -0.51 -5.96 16 19 C 0.51 4.78 7.74 -11.58 -0.09 4.69 16 20 O -0.52 -5.76 15.91 5.50 0.09 -5.68 16 21 C 0.52 4.12 8.04 -11.58 -0.09 4.02 16 22 N -0.82 -3.58 8.87 30.91 0.27 -3.30 16 23 O -0.51 -5.02 13.94 5.49 0.08 -4.94 16 24 C 0.09 0.88 6.59 -3.60 -0.02 0.86 16 25 C 0.12 1.30 6.58 -3.60 -0.02 1.27 16 26 C 0.06 0.91 4.60 -3.37 -0.02 0.89 16 27 C 0.14 2.51 6.69 -3.37 -0.02 2.49 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.04 0.82 6.73 -51.93 -0.35 0.47 16 30 H 0.08 1.85 4.03 -51.93 -0.21 1.64 16 31 H 0.08 1.58 7.02 -51.92 -0.36 1.21 16 32 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.07 0.64 7.61 -51.93 -0.40 0.25 16 34 H 0.12 1.23 4.43 -51.93 -0.23 1.00 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.16 1.42 4.09 -55.83 -0.23 1.19 16 37 H 0.41 1.32 8.32 -40.82 -0.34 0.98 16 38 H 0.41 0.99 8.93 -40.82 -0.36 0.63 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.92 7.00 -51.93 -0.36 0.56 16 41 H 0.11 1.22 7.16 -51.93 -0.37 0.85 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 44 H 0.10 1.14 3.79 -56.94 -0.22 0.92 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -35.35 350.71 -6.86 -42.21 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.01 Total: 2.04 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: -1.28 Total: 24.22 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -0.97 Total: -69.87 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.25 Total: -22.16 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.35 -6.86 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985829822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.689 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds