Wall clock time and date at job start Tue Mar 31 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99593 * 2 1 4 4 H 1.48493 * 109.47519 * 272.75780 * 3 2 1 5 5 H 1.48499 * 109.46962 * 32.76004 * 3 2 1 6 6 H 1.48504 * 109.46809 * 152.75617 * 3 2 1 7 7 C 1.38814 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99740 * 349.07671 * 7 2 1 9 9 N 1.36935 * 120.00112 * 169.08170 * 7 2 1 10 10 C 1.46972 * 120.59146 * 330.06494 * 9 7 2 11 11 C 1.53368 * 108.63081 * 235.20597 * 10 9 7 12 12 N 1.46960 * 108.64128 * 310.57719 * 11 10 9 13 13 C 1.34778 * 120.59607 * 235.21199 * 12 11 10 14 14 O 1.21591 * 119.99973 * 11.00333 * 13 12 11 15 15 N 1.34776 * 119.99950 * 191.28546 * 13 12 11 16 16 C 1.46966 * 120.59382 * 21.97369 * 15 13 12 17 17 C 1.53803 * 108.40223 * 124.75635 * 16 15 13 18 18 N 1.46965 * 108.57826 * 49.63589 * 17 16 15 19 19 C 1.34779 * 120.59691 * 124.62963 * 18 17 16 20 20 O 1.21347 * 119.99945 * 186.62914 * 19 18 17 21 21 C 1.49453 * 119.99747 * 6.62088 * 19 18 17 22 22 N 1.34774 * 119.99833 * 186.34603 * 21 19 18 23 23 O 1.21354 * 119.99979 * 6.34758 * 21 19 18 24 24 C 1.46965 * 118.81319 * 304.64691 * 18 17 16 25 25 C 1.46965 * 120.59448 * 202.24975 * 15 13 12 26 26 C 1.46960 * 118.80920 * 55.47696 * 12 11 10 27 27 C 1.46959 * 120.59532 * 150.04511 * 9 7 2 28 28 H 0.96996 * 120.00378 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.60890 * 115.46265 * 10 9 7 30 30 H 1.09002 * 109.74791 * 355.03195 * 10 9 7 31 31 H 1.09010 * 109.60751 * 190.82981 * 11 10 9 32 32 H 1.09007 * 109.60970 * 70.32659 * 11 10 9 33 33 H 1.08997 * 109.60764 * 244.54316 * 16 15 13 34 34 H 1.09004 * 109.61181 * 5.04549 * 16 15 13 35 35 H 1.09002 * 109.74468 * 289.85169 * 17 16 15 36 36 H 1.09002 * 109.67894 * 169.38213 * 17 16 15 37 37 H 0.96998 * 119.99976 * 359.97438 * 22 21 19 38 38 H 0.97000 * 119.99656 * 180.02562 * 22 21 19 39 39 H 1.09001 * 109.61171 * 295.48170 * 24 18 17 40 40 H 1.08996 * 109.75166 * 175.05486 * 24 18 17 41 41 H 1.09003 * 109.60540 * 354.94613 * 25 15 13 42 42 H 1.08994 * 109.60667 * 115.46172 * 25 15 13 43 43 H 1.09003 * 109.61155 * 64.26998 * 26 12 11 44 44 H 1.09005 * 109.61038 * 184.78272 * 26 12 11 45 45 H 1.08995 * 109.61090 * 244.53557 * 27 9 7 46 46 H 1.08998 * 109.61085 * 4.88039 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4393 2.0802 -1.3984 5 1 1.4778 2.6351 0.7576 6 1 3.5756 1.4241 0.6410 7 6 2.0103 -1.2021 -0.0005 8 1 1.4850 -2.1290 0.1763 9 7 3.3611 -1.2127 -0.2252 10 6 3.9867 -0.1865 -1.0711 11 6 4.7719 -0.8846 -2.1884 12 7 5.6220 -1.9220 -1.5877 13 6 6.9515 -1.9323 -1.8087 14 8 7.4873 -0.9778 -2.3381 15 7 7.6862 -3.0032 -1.4482 16 6 7.0546 -4.3183 -1.2709 17 6 7.7841 -5.3322 -2.1683 18 7 9.2302 -5.2045 -1.9396 19 6 9.9648 -6.2751 -1.5783 20 8 11.1317 -6.1361 -1.2756 21 6 9.3423 -7.6335 -1.5503 22 7 10.0366 -8.6832 -1.0681 23 8 8.2116 -7.7913 -1.9619 24 6 9.8609 -3.8882 -2.1116 25 6 9.1324 -2.8754 -1.2196 26 6 4.9956 -2.9513 -0.7463 27 6 4.2112 -2.2500 0.3757 28 1 -0.4850 0.8400 0.0004 29 1 4.6653 0.4190 -0.4703 30 1 3.2172 0.4503 -1.5076 31 1 5.3951 -0.1563 -2.7076 32 1 4.0773 -1.3432 -2.8923 33 1 7.1345 -4.6248 -0.2280 34 1 6.0047 -4.2617 -1.5586 35 1 7.5596 -5.1261 -3.2148 36 1 7.4620 -6.3429 -1.9173 37 1 10.9404 -8.5570 -0.7395 38 1 9.6326 -9.5649 -1.0503 39 1 9.7843 -3.5792 -3.1541 40 1 10.9104 -3.9420 -1.8222 41 1 9.4550 -1.8657 -1.4735 42 1 9.3568 -3.0816 -0.1731 43 1 4.3166 -3.5537 -1.3497 44 1 5.7666 -3.5883 -0.3126 45 1 4.9058 -1.7915 1.0794 46 1 3.5883 -2.9766 0.8973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985829822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:46 Heat of formation + Delta-G solvation = -12.928372 kcal Electronic energy + Delta-G solvation = -31046.066321 eV Core-core repulsion = 26780.888670 eV Total energy + Delta-G solvation = -4265.177651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27880 -41.53038 -39.64018 -38.94460 -38.22902 -36.09579 -35.33822 -34.48221 -33.50203 -32.81835 -31.87138 -29.76061 -28.41940 -26.25839 -26.07244 -24.82869 -24.40973 -23.23991 -22.11465 -21.44555 -20.48104 -19.27805 -18.61034 -18.34115 -17.90399 -17.59399 -17.23099 -17.08810 -16.96021 -16.83835 -16.32940 -16.07682 -15.89754 -15.62951 -15.50860 -15.25759 -15.11817 -14.85474 -14.54794 -14.45469 -14.10423 -13.93570 -13.76505 -13.42575 -13.20259 -12.92964 -12.55136 -12.34616 -12.32817 -12.25647 -12.01650 -11.94883 -11.73442 -11.48549 -11.21822 -10.91888 -10.82591 -10.48579 -10.30833 -9.94383 -9.35430 -8.80476 -8.16445 -5.55917 0.26564 1.22186 1.27362 1.39496 1.45432 1.55938 1.91205 2.06539 2.37794 2.51556 2.70342 3.10351 3.23956 3.43469 3.70321 3.76709 3.91822 4.06945 4.10266 4.17917 4.20517 4.28748 4.34838 4.40687 4.48889 4.54042 4.58689 4.68542 4.70555 4.77837 4.79211 4.92830 4.94295 5.10673 5.14106 5.33155 5.56174 5.70834 5.80135 5.85457 5.92000 6.11139 6.13306 6.62886 6.79499 6.86064 7.00037 7.40025 7.56658 7.98629 9.02794 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.002818 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.901629 B = 9933.262012 C =10755.370646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.034 4.034 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.315 1.315 6 H -0.261 1.261 7 C -0.242 4.242 8 H 0.065 0.935 9 N -0.620 5.620 10 C 0.111 3.889 11 C 0.124 3.876 12 N -0.618 5.618 13 C 0.711 3.289 14 O -0.627 6.627 15 N -0.634 5.634 16 C 0.075 3.925 17 C 0.055 3.945 18 N -0.578 5.578 19 C 0.506 3.494 20 O -0.541 6.541 21 C 0.518 3.482 22 N -0.796 5.796 23 O -0.531 6.531 24 C 0.101 3.899 25 C 0.123 3.877 26 C 0.073 3.927 27 C 0.130 3.870 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.162 0.838 37 H 0.423 0.577 38 H 0.425 0.575 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.028 0.972 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.308 -18.418 -2.325 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.229 4.229 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.244 1.244 6 H -0.186 1.186 7 C -0.372 4.372 8 H 0.082 0.918 9 N -0.345 5.345 10 C -0.015 4.015 11 C -0.001 4.001 12 N -0.354 5.354 13 C 0.414 3.586 14 O -0.508 6.508 15 N -0.373 5.373 16 C -0.047 4.047 17 C -0.067 4.067 18 N -0.310 5.310 19 C 0.288 3.712 20 O -0.419 6.419 21 C 0.297 3.703 22 N -0.363 5.363 23 O -0.410 6.410 24 C -0.022 4.022 25 C -0.001 4.001 26 C -0.049 4.049 27 C 0.005 3.995 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.089 0.911 36 H 0.178 0.822 37 H 0.255 0.745 38 H 0.260 0.740 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.153 0.847 45 H 0.046 0.954 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 23.381 -17.685 -2.724 29.442 hybrid contribution -0.105 1.111 0.099 1.120 sum 23.276 -16.574 -2.625 28.694 Atomic orbital electron populations 1.69865 1.07119 1.27083 1.56578 1.25925 0.95880 1.00835 1.00244 0.85974 0.78411 0.80408 0.77303 1.20511 1.24427 1.18603 1.18919 0.82607 0.93102 1.42571 0.91760 1.44398 1.03686 1.31589 1.54845 1.21770 0.95316 0.92048 0.92392 1.21835 0.92575 0.90650 0.95039 1.47213 1.05236 1.30944 1.52019 1.16000 0.81196 0.82816 0.78541 1.90838 1.71515 1.37967 1.50507 1.47138 1.08331 1.07604 1.74202 1.23182 0.99476 0.80953 1.01093 1.23628 0.77564 1.05094 1.00416 1.47996 1.09980 1.08189 1.64881 1.20248 0.86282 0.86246 0.78386 1.90760 1.17033 1.85923 1.48166 1.19935 0.85519 0.86488 0.78337 1.43446 1.20281 1.10494 1.62048 1.90494 1.18658 1.83991 1.47832 1.22123 0.98797 0.80630 1.00638 1.21852 0.77867 1.00540 0.99792 1.23389 0.98306 0.90386 0.92832 1.21642 0.92941 0.91095 0.93850 0.92963 0.95336 0.92142 0.89708 0.91022 0.88712 0.85987 0.91139 0.82175 0.74508 0.74035 0.90445 0.86963 0.88899 0.89879 0.90038 0.84747 0.95374 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.47 13.97 21.65 0.30 -59.17 16 2 C -0.03 -1.97 5.39 84.86 0.46 -1.51 16 3 Si 0.95 46.97 24.27 68.60 1.66 48.64 16 4 H -0.28 -13.14 6.72 99.48 0.67 -12.47 16 5 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 6 H -0.26 -12.53 5.85 99.48 0.58 -11.95 16 7 C -0.24 -13.16 10.10 84.03 0.85 -12.31 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 9 N -0.62 -27.89 2.76 -697.34 -1.93 -29.82 16 10 C 0.11 4.74 4.26 86.41 0.37 5.10 16 11 C 0.12 4.48 6.60 86.42 0.57 5.05 16 12 N -0.62 -19.43 2.91 -835.13 -2.43 -21.85 16 13 C 0.71 22.07 7.91 179.05 1.42 23.49 16 14 O -0.63 -24.01 15.42 -4.00 -0.06 -24.07 16 15 N -0.63 -14.23 2.87 -847.48 -2.44 -16.67 16 16 C 0.07 1.22 4.48 86.56 0.39 1.61 16 17 C 0.05 0.86 6.26 86.56 0.54 1.40 16 18 N -0.58 -9.50 2.95 -818.74 -2.41 -11.91 16 19 C 0.51 8.30 7.74 87.27 0.68 8.98 16 20 O -0.54 -10.63 15.91 -3.24 -0.05 -10.68 16 21 C 0.52 6.89 8.04 87.27 0.70 7.59 16 22 N -0.80 -4.71 8.87 -174.49 -1.55 -6.26 16 23 O -0.53 -9.11 13.94 -3.26 -0.05 -9.15 16 24 C 0.10 1.68 6.59 86.42 0.57 2.24 16 25 C 0.12 2.33 6.58 86.42 0.57 2.90 16 26 C 0.07 1.93 4.60 86.57 0.40 2.33 16 27 C 0.13 4.49 6.69 86.57 0.58 5.07 16 28 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.03 1.27 6.73 -2.39 -0.02 1.25 16 30 H 0.06 2.81 4.03 -2.39 -0.01 2.80 16 31 H 0.08 3.08 7.02 -2.38 -0.02 3.06 16 32 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.10 1.23 7.61 -2.39 -0.02 1.21 16 34 H 0.12 2.03 4.43 -2.39 -0.01 2.01 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.16 2.49 4.09 -64.12 -0.26 2.23 16 37 H 0.42 1.49 8.32 -92.71 -0.77 0.72 16 38 H 0.42 0.79 8.93 -92.71 -0.83 -0.03 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.11 1.74 7.00 -2.39 -0.02 1.72 16 41 H 0.09 2.04 7.16 -2.39 -0.02 2.02 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.05 7.81 -2.39 -0.02 2.03 16 44 H 0.14 2.59 3.79 -7.09 -0.03 2.56 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 Total: -1.00 -76.77 350.71 -1.82 -78.60 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -0.96 Total: 10.40 kcal Atomic # 6 Polarization: 43.86 SS G_CDS: 8.08 Total: 51.95 kcal Atomic # 7 Polarization: -135.23 SS G_CDS: -10.45 Total: -145.67 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.16 Total: -43.90 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.66 Total: 48.64 kcal Total: -76.77 -1.82 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985829822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.668 kcal (2) G-P(sol) polarization free energy of solvation -76.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds