Wall clock time and date at job start Tue Mar 31 2020 23:01:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39043 * 121.02080 * 2 1
4 4 C 1.47757 * 120.26985 * 359.97438 * 3 2 1
5 5 O 1.21568 * 120.00061 * 321.72246 * 4 3 2
6 6 N 1.34774 * 120.00466 * 141.71584 * 4 3 2
7 7 C 1.47428 * 125.64593 * 354.86651 * 6 4 3
8 8 C 1.55122 * 104.94263 * 203.96774 * 7 6 4
9 9 C 1.55150 * 101.48575 * 323.22401 * 8 7 6
10 10 H 1.09001 * 110.71996 * 276.83192 * 9 8 7
11 11 N 1.46499 * 110.72031 * 153.73523 * 9 8 7
12 12 C 1.36940 * 120.00145 * 88.84070 * 11 9 8
13 13 H 1.08005 * 119.99693 * 0.02562 * 12 11 9
14 14 C 1.38808 * 119.99940 * 180.02562 * 12 11 9
15 15 N 1.31625 * 119.99845 * 180.02562 * 14 12 11
16 16 Si 1.86798 * 120.00429 * 359.97438 * 14 12 11
17 17 H 1.48499 * 109.47414 * 270.00483 * 16 14 12
18 18 H 1.48503 * 109.46826 * 30.00264 * 16 14 12
19 19 H 1.48494 * 109.47294 * 149.99880 * 16 14 12
20 20 C 1.47018 * 125.65235 * 174.82923 * 6 4 3
21 21 H 1.09001 * 109.88292 * 298.39082 * 20 6 4
22 22 C 1.53007 * 110.01407 * 59.48388 * 20 6 4
23 23 C 1.40566 * 119.46746 * 179.72538 * 3 2 1
24 24 N 1.30822 * 121.53556 * 0.22350 * 23 3 2
25 25 C 1.33796 * 121.72322 * 0.02641 * 24 23 3
26 26 C 1.40523 * 120.82626 * 180.02562 * 25 24 23
27 27 C 1.36134 * 119.81508 * 179.97438 * 26 25 24
28 28 C 1.39347 * 121.09113 * 359.97438 * 27 26 25
29 29 C 1.36139 * 120.83981 * 359.97438 * 28 27 26
30 30 C 1.40498 * 121.01880 * 180.21408 * 2 1 3
31 31 H 1.08996 * 109.47168 * 87.21848 * 1 2 3
32 32 H 1.09001 * 109.47179 * 207.21730 * 1 2 3
33 33 H 1.08996 * 109.46844 * 327.21670 * 1 2 3
34 34 H 1.08999 * 110.36822 * 322.93234 * 7 6 4
35 35 H 1.09004 * 110.36405 * 85.25746 * 7 6 4
36 36 H 1.09004 * 111.15788 * 205.13655 * 8 7 6
37 37 H 1.08995 * 110.93329 * 81.21944 * 8 7 6
38 38 H 0.97003 * 119.99986 * 268.84109 * 11 9 8
39 39 H 0.97002 * 120.00238 * 179.97438 * 15 14 12
40 40 H 1.09000 * 109.47317 * 177.88668 * 22 20 6
41 41 H 1.08993 * 109.46785 * 297.88941 * 22 20 6
42 42 H 1.09000 * 109.46469 * 57.88615 * 22 20 6
43 43 H 1.08000 * 119.23298 * 180.24871 * 23 3 2
44 44 H 1.08003 * 120.09798 * 0.02562 * 26 25 24
45 45 H 1.07998 * 119.45674 * 180.02562 * 27 26 25
46 46 H 1.08004 * 119.58288 * 180.02562 * 28 27 26
47 47 H 1.07992 * 120.19550 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2235 1.1916 0.0000
4 6 1.5138 2.4875 -0.0006
5 8 0.4972 2.6235 -0.6532
6 7 1.9932 3.5189 0.7225
7 6 3.1477 3.4632 1.6378
8 6 2.9203 4.6256 2.6395
9 6 2.3016 5.7103 1.7187
10 1 3.0818 6.2603 1.1926
11 7 1.4562 6.6246 2.4905
12 6 2.0024 7.7401 3.0672
13 1 3.0564 7.9460 2.9528
14 6 1.2014 8.6060 3.7989
15 7 1.7263 9.6784 4.3528
16 14 -0.6217 8.2502 3.9963
17 1 -1.3738 8.8889 2.8866
18 1 -0.8457 6.7825 3.9657
19 1 -1.0950 8.7961 5.2937
20 6 1.4523 4.8859 0.7286
21 1 1.5239 5.3174 -0.2698
22 6 -0.0083 4.8690 1.1844
23 6 3.6287 1.1535 0.0059
24 7 4.2824 0.0203 0.0070
25 6 3.6483 -1.1578 0.0021
26 6 4.3695 -2.3638 0.0040
27 6 3.7031 -3.5509 -0.0005
28 6 2.3104 -3.5944 -0.0065
29 6 1.5764 -2.4478 -0.0074
30 6 2.2310 -1.2041 -0.0045
31 1 -0.3633 0.0499 -1.0264
32 1 -0.3633 -0.9139 0.4700
33 1 -0.3633 0.8640 0.5564
34 1 3.1702 2.5080 2.1623
35 1 4.0759 3.6167 1.0873
36 1 3.8633 4.9671 3.0665
37 1 2.2214 4.3333 3.4231
38 1 0.5094 6.4398 2.5930
39 1 1.1665 10.2838 4.8639
40 1 -0.3891 5.8897 1.2217
41 1 -0.6017 4.2853 0.4808
42 1 -0.0743 4.4201 2.1754
43 1 4.1814 2.0813 0.0099
44 1 5.4494 -2.3491 0.0098
45 1 4.2632 -4.4743 0.0013
46 1 1.8067 -4.5498 -0.0096
47 1 0.4974 -2.4936 -0.0117
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000986579952.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:01:52
Heat of formation + Delta-G solvation = 29.412028 kcal
Electronic energy + Delta-G solvation = -29257.735667 eV
Core-core repulsion = 25405.243297 eV
Total energy + Delta-G solvation = -3852.492370 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.27091 -41.11196 -39.09494 -37.90030 -36.12662 -35.57813 -33.79499 -32.37333
-31.94176 -31.34270 -30.71861 -28.94009 -27.00631 -25.81605 -25.08213 -24.65832
-23.75979 -22.10261 -21.42837 -20.48751 -19.87774 -19.19796 -18.85455 -17.71724
-17.20864 -17.10791 -16.43658 -16.41813 -15.95873 -15.79210 -15.40232 -15.32327
-15.04323 -14.92329 -14.64585 -14.52208 -14.15650 -14.03326 -13.87062 -13.69855
-13.45385 -13.20510 -13.12884 -13.03074 -12.90831 -12.81598 -12.67377 -12.58196
-12.40849 -12.16179 -11.97195 -11.72933 -11.59945 -11.22601 -11.15076 -10.98476
-10.48652 -9.88264 -9.74700 -9.32398 -9.23784 -8.02165 -5.35699 -0.80160
-0.40912 0.82605 1.36336 1.38123 1.44655 1.46772 1.75021 2.07044
2.46853 3.01376 3.12333 3.26576 3.35452 3.43071 3.51714 3.54745
3.65782 3.80285 3.81650 3.94609 4.09525 4.18915 4.25971 4.28842
4.31504 4.38540 4.42716 4.47372 4.52164 4.58018 4.61101 4.68892
4.78145 4.91407 4.95193 4.99827 5.02352 5.10269 5.13388 5.19983
5.24779 5.37331 5.42440 5.43130 5.47882 5.78474 5.85007 6.21714
6.40657 6.75772 6.97919 7.07000 7.81901 7.99937 9.18847
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.023598 B = 0.002596 C = 0.002467
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1186.266051 B =10783.683275 C =11348.969790
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C 0.035 3.965
3 C -0.210 4.210
4 C 0.582 3.418
5 O -0.559 6.559
6 N -0.602 5.602
7 C 0.102 3.898
8 C -0.144 4.144
9 C 0.170 3.830
10 H 0.075 0.925
11 N -0.745 5.745
12 C -0.225 4.225
13 H 0.067 0.933
14 C -0.059 4.059
15 N -0.980 5.980
16 Si 0.939 3.061
17 H -0.279 1.279
18 H -0.255 1.255
19 H -0.296 1.296
20 C 0.134 3.866
21 H 0.078 0.922
22 C -0.157 4.157
23 C 0.161 3.839
24 N -0.497 5.497
25 C 0.119 3.881
26 C -0.118 4.118
27 C -0.079 4.079
28 C -0.115 4.115
29 C -0.096 4.096
30 C -0.126 4.126
31 H 0.090 0.910
32 H 0.099 0.901
33 H 0.063 0.937
34 H 0.085 0.915
35 H 0.098 0.902
36 H 0.088 0.912
37 H 0.061 0.939
38 H 0.369 0.631
39 H 0.257 0.743
40 H 0.061 0.939
41 H 0.068 0.932
42 H 0.051 0.949
43 H 0.178 0.822
44 H 0.144 0.856
45 H 0.164 0.836
46 H 0.163 0.837
47 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.914 -31.307 -9.850 32.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.026 3.974
3 C -0.215 4.215
4 C 0.371 3.629
5 O -0.439 6.439
6 N -0.334 5.334
7 C -0.020 4.020
8 C -0.185 4.185
9 C 0.061 3.939
10 H 0.093 0.907
11 N -0.390 5.390
12 C -0.356 4.356
13 H 0.085 0.915
14 C -0.251 4.251
15 N -0.630 5.630
16 Si 0.767 3.233
17 H -0.205 1.205
18 H -0.180 1.180
19 H -0.223 1.223
20 C 0.030 3.970
21 H 0.096 0.904
22 C -0.215 4.215
23 C -0.012 4.012
24 N -0.205 5.205
25 C -0.001 4.001
26 C -0.137 4.137
27 C -0.099 4.099
28 C -0.132 4.132
29 C -0.114 4.114
30 C -0.128 4.128
31 H 0.109 0.891
32 H 0.118 0.882
33 H 0.082 0.918
34 H 0.103 0.897
35 H 0.116 0.884
36 H 0.107 0.893
37 H 0.080 0.920
38 H 0.206 0.794
39 H 0.066 0.934
40 H 0.080 0.920
41 H 0.087 0.913
42 H 0.070 0.930
43 H 0.195 0.805
44 H 0.162 0.838
45 H 0.182 0.818
46 H 0.181 0.819
47 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 2.426 -31.238 -10.171 32.942
hybrid contribution -1.823 0.975 0.473 2.121
sum 0.603 -30.264 -9.698 31.785
Atomic orbital electron populations
1.20954 0.88208 1.03957 1.04095 1.20813 0.97679 0.90742 0.88128
1.20658 0.95803 0.93259 1.11823 1.17828 0.83555 0.82822 0.78688
1.90743 1.25303 1.83383 1.44430 1.48440 1.32220 1.09248 1.43517
1.22663 0.88722 0.99821 0.90831 1.23392 1.02237 0.95140 0.97741
1.21360 0.92157 0.89504 0.90903 0.90719 1.42974 1.08068 1.25874
1.62128 1.19040 0.94621 0.98221 1.23676 0.91527 1.25368 1.01863
0.97102 1.00729 1.69855 1.36568 1.15738 1.40884 0.85655 0.81851
0.78671 0.77107 1.20518 1.17997 1.22279 1.21665 0.94049 0.81629
0.99682 0.90380 1.21991 0.96276 1.01887 1.01338 1.23354 0.89792
0.97242 0.90816 1.68005 1.39834 0.97936 1.14711 1.19439 0.90350
0.93175 0.97157 1.21061 1.01171 0.90072 1.01366 1.21435 0.94982
0.98506 0.94968 1.21403 0.94158 0.99513 0.98148 1.21400 1.01563
0.90407 0.98068 1.18874 0.93935 0.94673 1.05286 0.89124 0.88217
0.91782 0.89663 0.88398 0.89345 0.91988 0.79406 0.93397 0.92006
0.91316 0.92982 0.80522 0.83790 0.81831 0.81907 0.82835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.21 8.46 71.24 0.60 -1.60 16
2 C 0.03 0.78 5.98 -19.12 -0.11 0.66 16
3 C -0.21 -5.20 5.37 -20.00 -0.11 -5.31 16
4 C 0.58 16.64 6.72 86.76 0.58 17.23 16
5 O -0.56 -18.79 13.79 -3.93 -0.05 -18.85 16
6 N -0.60 -16.48 3.08 -791.09 -2.44 -18.92 16
7 C 0.10 2.33 5.24 86.93 0.46 2.78 16
8 C -0.14 -4.24 6.79 32.06 0.22 -4.02 16
9 C 0.17 5.94 3.46 46.18 0.16 6.10 16
10 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16
11 N -0.75 -33.02 4.78 -317.34 -1.52 -34.54 16
12 C -0.22 -12.20 10.45 84.03 0.88 -11.33 16
13 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16
14 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16
15 N -0.98 -61.61 13.97 21.65 0.30 -61.30 16
16 Si 0.94 44.91 27.74 68.60 1.90 46.81 16
17 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16
18 H -0.26 -11.12 6.52 99.48 0.65 -10.48 16
19 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16
20 C 0.13 4.22 3.51 45.34 0.16 4.38 16
21 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
22 C -0.16 -5.19 7.93 71.98 0.57 -4.62 16
23 C 0.16 3.67 9.35 85.41 0.80 4.47 16
24 N -0.50 -11.84 10.30 -187.69 -1.93 -13.77 16
25 C 0.12 2.57 6.61 40.28 0.27 2.83 16
26 C -0.12 -1.85 9.97 22.34 0.22 -1.63 16
27 C -0.08 -0.77 9.94 22.05 0.22 -0.56 16
28 C -0.11 -1.04 9.96 22.05 0.22 -0.82 16
29 C -0.10 -1.26 9.31 22.34 0.21 -1.05 16
30 C -0.13 -2.50 5.74 -21.28 -0.12 -2.62 16
31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
32 H 0.10 1.25 6.39 -2.39 -0.02 1.24 16
33 H 0.06 1.49 6.71 -2.39 -0.02 1.47 16
34 H 0.09 1.77 7.32 -2.39 -0.02 1.76 16
35 H 0.10 1.77 6.95 -2.39 -0.02 1.75 16
36 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16
37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16
38 H 0.37 16.10 2.85 -92.71 -0.26 15.83 16
39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16
40 H 0.06 2.15 6.72 -2.39 -0.02 2.14 16
41 H 0.07 2.27 6.63 -2.39 -0.02 2.25 16
42 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16
43 H 0.18 3.34 5.88 -2.91 -0.02 3.32 16
44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16
45 H 0.16 0.50 8.06 -2.91 -0.02 0.47 16
46 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16
47 H 0.15 1.29 6.38 -2.91 -0.02 1.28 16
Total: -1.00 -72.43 369.81 2.63 -69.80
By element:
Atomic # 1 Polarization: 28.11 SS G_CDS: 0.68 Total: 28.80 kcal
Atomic # 6 Polarization: -3.72 SS G_CDS: 5.68 Total: 1.97 kcal
Atomic # 7 Polarization: -122.94 SS G_CDS: -5.59 Total: -128.53 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.05 Total: -18.85 kcal
Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal
Total: -72.43 2.63 -69.80 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000986579952.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.212 kcal
(2) G-P(sol) polarization free energy of solvation -72.429 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.412 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds