Wall clock time and date at job start Tue Mar 31 2020 23:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39038 * 121.01980 * 2 1 4 4 C 1.47765 * 120.26838 * 0.04778 * 3 2 1 5 5 O 1.21558 * 119.99927 * 318.28063 * 4 3 2 6 6 N 1.34776 * 120.00220 * 138.28557 * 4 3 2 7 7 C 1.47433 * 125.64585 * 5.05171 * 6 4 3 8 8 C 1.54906 * 104.83167 * 204.09413 * 7 6 4 9 9 C 1.55158 * 101.58461 * 322.99489 * 8 7 6 10 10 H 1.08996 * 110.72019 * 153.86155 * 9 8 7 11 11 N 1.46490 * 110.72093 * 276.96117 * 9 8 7 12 12 C 1.36941 * 120.00145 * 209.23009 * 11 9 8 13 13 H 1.07994 * 119.99698 * 359.97438 * 12 11 9 14 14 C 1.38815 * 120.00082 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99755 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47702 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46918 * 119.99858 * 16 14 12 19 19 H 1.48504 * 109.47064 * 239.99741 * 16 14 12 20 20 C 1.47020 * 125.65054 * 184.75275 * 6 4 3 21 21 H 1.08996 * 109.88132 * 59.55693 * 20 6 4 22 22 C 1.52999 * 109.88163 * 298.39257 * 20 6 4 23 23 C 1.40560 * 119.46714 * 180.02562 * 3 2 1 24 24 N 1.30826 * 121.53944 * 0.02562 * 23 3 2 25 25 C 1.33797 * 121.71881 * 359.97438 * 24 23 3 26 26 C 1.40532 * 120.83265 * 180.02562 * 25 24 23 27 27 C 1.36129 * 119.81335 * 179.97438 * 26 25 24 28 28 C 1.39347 * 121.09841 * 0.28218 * 27 26 25 29 29 C 1.36132 * 120.83123 * 359.40378 * 28 27 26 30 30 C 1.40498 * 121.01797 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47495 * 92.74956 * 1 2 3 32 32 H 1.09003 * 109.46881 * 212.74966 * 1 2 3 33 33 H 1.08999 * 109.47030 * 332.74788 * 1 2 3 34 34 H 1.08996 * 110.36849 * 322.93844 * 7 6 4 35 35 H 1.08998 * 110.36415 * 85.15316 * 7 6 4 36 36 H 1.09007 * 111.00396 * 81.06575 * 8 7 6 37 37 H 1.09001 * 111.00395 * 204.91819 * 8 7 6 38 38 H 0.97002 * 120.00469 * 29.22447 * 11 9 8 39 39 H 0.96998 * 120.00623 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.47197 * 65.38426 * 22 20 6 41 41 H 1.08994 * 109.47017 * 185.38772 * 22 20 6 42 42 H 1.09004 * 109.46543 * 305.38721 * 22 20 6 43 43 H 1.07997 * 119.23541 * 180.02562 * 23 3 2 44 44 H 1.08001 * 120.09195 * 359.96224 * 26 25 24 45 45 H 1.08008 * 119.44877 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.57680 * 179.69717 * 28 27 26 47 47 H 1.08001 * 120.19105 * 180.27971 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1915 0.0000 4 6 1.5136 2.4875 0.0011 5 8 0.5320 2.6434 -0.6987 6 7 1.9546 3.4968 0.7778 7 6 3.1847 3.4814 1.5904 8 6 2.9329 4.5211 2.7108 9 6 2.1396 5.6149 1.9481 10 1 1.5015 6.1755 2.6313 11 7 3.0507 6.5148 1.2367 12 6 2.6924 7.8181 1.0164 13 1 1.7380 8.1822 1.3668 14 6 3.5559 8.6709 0.3427 15 7 4.7193 8.2272 -0.0838 16 14 3.0668 10.4484 0.0416 17 1 1.7196 10.6952 0.6155 18 1 4.0538 11.3498 0.6888 19 1 3.0380 10.7132 -1.4193 20 6 1.2919 4.7978 0.9504 21 1 0.2887 4.6525 1.3512 22 6 1.2181 5.5264 -0.3929 23 6 3.6286 1.1535 -0.0005 24 7 4.2825 0.0203 -0.0016 25 6 3.6483 -1.1578 -0.0016 26 6 4.3694 -2.3640 -0.0022 27 6 3.7029 -3.5510 -0.0017 28 6 2.3101 -3.5944 -0.0065 29 6 1.5763 -2.4478 0.0003 30 6 2.2310 -1.2041 -0.0005 31 1 -0.3634 -0.0493 -1.0264 32 1 -0.3633 -0.8643 0.5560 33 1 -0.3633 0.9136 0.4706 34 1 3.3435 2.4921 2.0196 35 1 4.0427 3.7738 0.9852 36 1 2.3336 4.0924 3.5141 37 1 3.8731 4.9166 3.0951 38 1 3.9078 6.1877 0.9217 39 1 5.3229 8.8232 -0.5542 40 1 0.5710 4.9716 -1.0722 41 1 0.8135 6.5271 -0.2417 42 1 2.2176 5.5995 -0.8218 43 1 4.1814 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0032 45 1 4.2630 -4.4745 -0.0017 46 1 1.8066 -4.5498 -0.0110 47 1 0.4973 -2.4935 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986579957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:58 Heat of formation + Delta-G solvation = 40.842485 kcal Electronic energy + Delta-G solvation = -29459.377293 eV Core-core repulsion = 25607.380584 eV Total energy + Delta-G solvation = -3851.996708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28542 -39.80374 -37.70757 -36.97314 -34.69737 -34.05494 -31.89534 -30.97015 -30.60704 -30.44838 -28.88189 -27.90459 -25.39588 -24.56267 -24.08521 -23.35034 -22.39144 -21.26769 -20.23064 -19.06729 -18.11705 -17.85849 -17.45508 -16.57935 -16.17577 -15.81088 -14.99412 -14.72045 -14.66795 -14.54880 -14.30199 -14.12861 -13.75864 -13.54831 -13.46748 -13.21250 -13.03004 -12.79566 -12.71531 -12.48605 -12.24461 -11.98221 -11.87552 -11.68044 -11.55273 -11.33678 -10.90488 -10.89611 -10.63945 -10.50396 -10.33945 -10.20540 -10.05764 -10.00220 -9.69469 -9.35464 -8.98903 -8.98794 -8.48388 -8.26461 -7.06475 -5.84004 -3.13464 0.06884 0.46575 1.66727 2.47649 3.04415 3.22061 3.39928 3.46301 3.48106 3.86717 4.06101 4.26116 4.41221 4.46993 4.53052 4.56971 4.72082 4.84712 4.93254 4.96495 5.18762 5.19765 5.26069 5.33434 5.45046 5.46360 5.54995 5.63332 5.68384 5.69289 5.77399 5.78592 5.83616 5.91208 6.04896 6.09097 6.18136 6.20206 6.26218 6.27476 6.41742 6.53430 6.56064 6.63888 6.82362 7.01435 7.33855 7.64771 7.69694 7.80846 8.32811 8.35518 9.45585 9.98904 10.34019 11.38019 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002667 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.958745 B =10497.527027 C =11018.769746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.032 3.968 3 C -0.184 4.184 4 C 0.575 3.425 5 O -0.533 6.533 6 N -0.596 5.596 7 C 0.097 3.903 8 C -0.145 4.145 9 C 0.171 3.829 10 H 0.076 0.924 11 N -0.708 5.708 12 C -0.240 4.240 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 0.904 3.096 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.292 1.292 20 C 0.110 3.890 21 H 0.061 0.939 22 C -0.133 4.133 23 C 0.165 3.835 24 N -0.480 5.480 25 C 0.140 3.860 26 C -0.097 4.097 27 C -0.097 4.097 28 C -0.124 4.124 29 C -0.088 4.088 30 C -0.110 4.110 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.137 0.863 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 -23.338 3.701 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.023 3.977 3 C -0.189 4.189 4 C 0.362 3.638 5 O -0.411 6.411 6 N -0.329 5.329 7 C -0.026 4.026 8 C -0.184 4.184 9 C 0.058 3.942 10 H 0.094 0.906 11 N -0.347 5.347 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.576 5.576 16 Si 0.736 3.264 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.219 1.219 20 C 0.004 3.996 21 H 0.079 0.921 22 C -0.191 4.191 23 C -0.008 4.008 24 N -0.188 5.188 25 C 0.019 3.981 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.142 4.142 29 C -0.107 4.107 30 C -0.112 4.112 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.185 0.815 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.266 -23.197 3.278 23.813 hybrid contribution -0.618 0.909 -0.415 1.175 sum -4.883 -22.288 2.863 22.996 Atomic orbital electron populations 1.20947 0.89108 1.03674 1.03853 1.20515 0.96915 0.90548 0.89731 1.20888 0.95410 0.94323 1.08315 1.17551 0.83957 0.82434 0.79861 1.90762 1.27206 1.82409 1.40737 1.48551 1.25018 1.14816 1.44487 1.22492 0.87592 0.99563 0.92969 1.23158 1.02199 0.96489 0.96543 1.21255 0.91733 0.89802 0.91411 0.90639 1.42337 1.18529 1.07723 1.66158 1.19223 1.01230 0.86225 1.30386 0.90990 1.24724 0.96538 0.98240 1.01020 1.69653 1.09321 1.35118 1.43556 0.86163 0.77555 0.85145 0.77573 1.20519 1.21897 1.21881 1.22800 0.96140 0.81480 0.99160 0.92133 1.21777 1.02613 0.99515 0.95225 1.23309 0.90221 0.96804 0.90430 1.68013 1.39386 0.97405 1.13998 1.19025 0.89589 0.92704 0.96765 1.20835 1.00551 0.90089 1.00037 1.20958 0.94505 0.97994 0.98195 1.20915 0.94125 0.98490 1.00629 1.21070 1.00216 0.91039 0.98337 1.18670 0.94018 0.93917 1.04612 0.89271 0.91029 0.89782 0.91429 0.90772 0.91007 0.89311 0.78060 0.93474 0.94002 0.91389 0.91557 0.81517 0.84526 0.85231 0.85433 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.56 36.01 0.31 -1.00 16 2 C 0.03 0.41 5.98 -103.47 -0.62 -0.21 16 3 C -0.18 -2.67 5.39 -104.83 -0.57 -3.24 16 4 C 0.57 9.57 6.62 -12.37 -0.08 9.49 16 5 O -0.53 -10.20 14.10 5.31 0.07 -10.12 16 6 N -0.60 -9.63 3.06 -164.14 -0.50 -10.13 16 7 C 0.10 1.36 5.19 -2.53 -0.01 1.35 16 8 C -0.14 -2.07 6.69 -24.58 -0.16 -2.24 16 9 C 0.17 3.05 3.53 -66.09 -0.23 2.82 16 10 H 0.08 1.34 8.06 -51.93 -0.42 0.92 16 11 N -0.71 -15.91 3.86 -51.65 -0.20 -16.11 16 12 C -0.24 -6.11 8.48 -15.06 -0.13 -6.24 16 13 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 14 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 15 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 16 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 C 0.11 1.94 3.46 -66.95 -0.23 1.71 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.13 -2.70 8.03 37.16 0.30 -2.41 16 23 C 0.17 2.31 9.11 -17.10 -0.16 2.16 16 24 N -0.48 -6.77 10.30 -10.67 -0.11 -6.88 16 25 C 0.14 1.79 6.61 -84.78 -0.56 1.23 16 26 C -0.10 -0.97 9.97 -39.48 -0.39 -1.37 16 27 C -0.10 -0.75 9.94 -39.93 -0.40 -1.15 16 28 C -0.12 -0.93 9.96 -39.93 -0.40 -1.33 16 29 C -0.09 -0.79 9.31 -39.47 -0.37 -1.16 16 30 C -0.11 -1.32 5.74 -106.81 -0.61 -1.93 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.58 6.66 -51.93 -0.35 0.23 16 33 H 0.08 1.06 6.45 -51.93 -0.34 0.73 16 34 H 0.07 0.83 6.77 -51.93 -0.35 0.48 16 35 H 0.07 1.09 7.32 -51.93 -0.38 0.70 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.39 9.32 7.85 -40.82 -0.32 9.00 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.04 0.85 6.87 -51.93 -0.36 0.49 16 41 H 0.07 1.44 7.25 -51.93 -0.38 1.06 16 42 H 0.07 1.51 7.55 -51.93 -0.39 1.12 16 43 H 0.17 2.20 5.96 -52.49 -0.31 1.89 16 44 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 47 H 0.13 0.90 6.50 -52.49 -0.34 0.56 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -30.94 373.45 -10.25 -41.20 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.44 Total: 9.60 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -4.41 Total: -3.85 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.09 Total: -59.09 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.94 -10.25 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.039 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds