Wall clock time and date at job start Tue Mar 31 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39038 * 121.01980 * 2 1 4 4 C 1.47765 * 120.26838 * 0.04778 * 3 2 1 5 5 O 1.21558 * 119.99927 * 318.28063 * 4 3 2 6 6 N 1.34776 * 120.00220 * 138.28557 * 4 3 2 7 7 C 1.47433 * 125.64585 * 5.05171 * 6 4 3 8 8 C 1.54906 * 104.83167 * 204.09413 * 7 6 4 9 9 C 1.55158 * 101.58461 * 322.99489 * 8 7 6 10 10 H 1.08996 * 110.72019 * 153.86155 * 9 8 7 11 11 N 1.46490 * 110.72093 * 276.96117 * 9 8 7 12 12 C 1.36941 * 120.00145 * 209.23009 * 11 9 8 13 13 H 1.07994 * 119.99698 * 359.97438 * 12 11 9 14 14 C 1.38815 * 120.00082 * 179.97438 * 12 11 9 15 15 N 1.31615 * 120.00101 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99755 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47702 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46918 * 119.99858 * 16 14 12 19 19 H 1.48504 * 109.47064 * 239.99741 * 16 14 12 20 20 C 1.47020 * 125.65054 * 184.75275 * 6 4 3 21 21 H 1.08996 * 109.88132 * 59.55693 * 20 6 4 22 22 C 1.52999 * 109.88163 * 298.39257 * 20 6 4 23 23 C 1.40560 * 119.46714 * 180.02562 * 3 2 1 24 24 N 1.30826 * 121.53944 * 0.02562 * 23 3 2 25 25 C 1.33797 * 121.71881 * 359.97438 * 24 23 3 26 26 C 1.40532 * 120.83265 * 180.02562 * 25 24 23 27 27 C 1.36129 * 119.81335 * 179.97438 * 26 25 24 28 28 C 1.39347 * 121.09841 * 0.28218 * 27 26 25 29 29 C 1.36132 * 120.83123 * 359.40378 * 28 27 26 30 30 C 1.40498 * 121.01797 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47495 * 92.74956 * 1 2 3 32 32 H 1.09003 * 109.46881 * 212.74966 * 1 2 3 33 33 H 1.08999 * 109.47030 * 332.74788 * 1 2 3 34 34 H 1.08996 * 110.36849 * 322.93844 * 7 6 4 35 35 H 1.08998 * 110.36415 * 85.15316 * 7 6 4 36 36 H 1.09007 * 111.00396 * 81.06575 * 8 7 6 37 37 H 1.09001 * 111.00395 * 204.91819 * 8 7 6 38 38 H 0.97002 * 120.00469 * 29.22447 * 11 9 8 39 39 H 0.96998 * 120.00623 * 180.02562 * 15 14 12 40 40 H 1.08997 * 109.47197 * 65.38426 * 22 20 6 41 41 H 1.08994 * 109.47017 * 185.38772 * 22 20 6 42 42 H 1.09004 * 109.46543 * 305.38721 * 22 20 6 43 43 H 1.07997 * 119.23541 * 180.02562 * 23 3 2 44 44 H 1.08001 * 120.09195 * 359.96224 * 26 25 24 45 45 H 1.08008 * 119.44877 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.57680 * 179.69717 * 28 27 26 47 47 H 1.08001 * 120.19105 * 180.27971 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1915 0.0000 4 6 1.5136 2.4875 0.0011 5 8 0.5320 2.6434 -0.6987 6 7 1.9546 3.4968 0.7778 7 6 3.1847 3.4814 1.5904 8 6 2.9329 4.5211 2.7108 9 6 2.1396 5.6149 1.9481 10 1 1.5015 6.1755 2.6313 11 7 3.0507 6.5148 1.2367 12 6 2.6924 7.8181 1.0164 13 1 1.7380 8.1822 1.3668 14 6 3.5559 8.6709 0.3427 15 7 4.7193 8.2272 -0.0838 16 14 3.0668 10.4484 0.0416 17 1 1.7196 10.6952 0.6155 18 1 4.0538 11.3498 0.6888 19 1 3.0380 10.7132 -1.4193 20 6 1.2919 4.7978 0.9504 21 1 0.2887 4.6525 1.3512 22 6 1.2181 5.5264 -0.3929 23 6 3.6286 1.1535 -0.0005 24 7 4.2825 0.0203 -0.0016 25 6 3.6483 -1.1578 -0.0016 26 6 4.3694 -2.3640 -0.0022 27 6 3.7029 -3.5510 -0.0017 28 6 2.3101 -3.5944 -0.0065 29 6 1.5763 -2.4478 0.0003 30 6 2.2310 -1.2041 -0.0005 31 1 -0.3634 -0.0493 -1.0264 32 1 -0.3633 -0.8643 0.5560 33 1 -0.3633 0.9136 0.4706 34 1 3.3435 2.4921 2.0196 35 1 4.0427 3.7738 0.9852 36 1 2.3336 4.0924 3.5141 37 1 3.8731 4.9166 3.0951 38 1 3.9078 6.1877 0.9217 39 1 5.3229 8.8232 -0.5542 40 1 0.5710 4.9716 -1.0722 41 1 0.8135 6.5271 -0.2417 42 1 2.2176 5.5995 -0.8218 43 1 4.1814 2.0812 -0.0001 44 1 5.4493 -2.3493 -0.0032 45 1 4.2630 -4.4745 -0.0017 46 1 1.8066 -4.5498 -0.0110 47 1 0.4973 -2.4935 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986579957.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:57 Heat of formation + Delta-G solvation = 22.844082 kcal Electronic energy + Delta-G solvation = -29460.157762 eV Core-core repulsion = 25607.380584 eV Total energy + Delta-G solvation = -3852.777178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25089 -41.02184 -38.99962 -37.89793 -35.83577 -35.55887 -33.47732 -32.32653 -31.72175 -31.33831 -30.35436 -28.90230 -26.93288 -25.62769 -25.30939 -24.79229 -23.58662 -22.12330 -21.49266 -20.35582 -19.42627 -19.03731 -18.77495 -17.73320 -17.46493 -16.83677 -16.39703 -15.95017 -15.79974 -15.57515 -15.34072 -15.32826 -15.10880 -14.94818 -14.77728 -14.43964 -14.11403 -14.03492 -13.99830 -13.68660 -13.16917 -13.07974 -13.01417 -12.84361 -12.77400 -12.65890 -12.46990 -12.37234 -12.29031 -12.14146 -11.83240 -11.70135 -11.52611 -11.21471 -11.16500 -10.93537 -10.47780 -9.86185 -9.66028 -9.22934 -8.98722 -7.90460 -5.17311 -0.78605 -0.41387 0.83818 1.48015 1.49345 1.50209 1.57964 1.88840 2.06022 2.58190 3.00748 3.14328 3.35152 3.43892 3.44914 3.55438 3.68229 3.81160 3.84664 3.90732 4.07023 4.18871 4.22123 4.30492 4.34455 4.41835 4.44826 4.52379 4.54789 4.57314 4.62301 4.72386 4.84662 4.93389 4.94994 4.98788 5.02872 5.11309 5.11758 5.23982 5.26433 5.37916 5.42971 5.47150 5.48988 5.54473 5.61266 5.85938 6.30709 6.50431 6.75347 7.04884 7.38965 8.11562 8.35118 9.32664 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.002667 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.958745 B =10497.527027 C =11018.769746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.034 3.966 3 C -0.208 4.208 4 C 0.576 3.424 5 O -0.565 6.565 6 N -0.597 5.597 7 C 0.100 3.900 8 C -0.130 4.130 9 C 0.164 3.836 10 H 0.083 0.917 11 N -0.716 5.716 12 C -0.222 4.222 13 H 0.078 0.922 14 C -0.072 4.072 15 N -0.966 5.966 16 Si 0.960 3.040 17 H -0.266 1.266 18 H -0.296 1.296 19 H -0.302 1.302 20 C 0.116 3.884 21 H 0.073 0.927 22 C -0.118 4.118 23 C 0.156 3.844 24 N -0.498 5.498 25 C 0.117 3.883 26 C -0.119 4.119 27 C -0.078 4.078 28 C -0.113 4.113 29 C -0.094 4.094 30 C -0.124 4.124 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.375 0.625 39 H 0.248 0.752 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.165 0.835 46 H 0.166 0.834 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.859 -26.931 5.124 28.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.026 3.974 3 C -0.213 4.213 4 C 0.365 3.635 5 O -0.446 6.446 6 N -0.329 5.329 7 C -0.022 4.022 8 C -0.169 4.169 9 C 0.053 3.947 10 H 0.101 0.899 11 N -0.354 5.354 12 C -0.354 4.354 13 H 0.096 0.904 14 C -0.264 4.264 15 N -0.617 5.617 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.224 1.224 19 H -0.230 1.230 20 C 0.010 3.990 21 H 0.091 0.909 22 C -0.176 4.176 23 C -0.017 4.017 24 N -0.206 5.206 25 C -0.004 4.004 26 C -0.138 4.138 27 C -0.098 4.098 28 C -0.130 4.130 29 C -0.112 4.112 30 C -0.126 4.126 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.181 0.819 44 H 0.160 0.840 45 H 0.183 0.817 46 H 0.184 0.816 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.572 -26.818 4.745 27.799 hybrid contribution -0.279 1.739 -0.859 1.960 sum -5.851 -25.079 3.885 26.044 Atomic orbital electron populations 1.20961 0.87859 1.04162 1.04156 1.20812 0.97843 0.90447 0.88314 1.20687 0.95542 0.93676 1.11426 1.17892 0.83525 0.83094 0.79009 1.90728 1.28770 1.83097 1.41974 1.48547 1.25437 1.14108 1.44784 1.22542 0.86347 1.00782 0.92520 1.23087 1.02098 0.94866 0.96805 1.21472 0.91661 0.90188 0.91343 0.89866 1.42449 1.18817 1.07522 1.66627 1.19548 1.00655 0.87276 1.27938 0.90399 1.25385 0.97021 1.01601 1.02402 1.69792 1.10490 1.35896 1.45529 0.85262 0.77669 0.81434 0.76563 1.18987 1.22381 1.23040 1.22560 0.96896 0.82166 0.97391 0.90935 1.21579 1.00212 0.99146 0.96665 1.23200 0.90099 0.96944 0.91426 1.67992 1.39960 0.97973 1.14677 1.19482 0.90567 0.93009 0.97340 1.21051 1.01101 0.90095 1.01521 1.21438 0.95082 0.98343 0.94912 1.21416 0.94039 0.99570 0.98008 1.21399 1.01643 0.90179 0.97996 1.18880 0.93777 0.94776 1.05142 0.89223 0.87689 0.91752 0.89159 0.91841 0.87983 0.89231 0.79294 0.94354 0.94597 0.92630 0.94730 0.81916 0.84013 0.81716 0.81625 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.56 71.24 0.61 -1.76 16 2 C 0.03 0.86 5.98 -19.12 -0.11 0.75 16 3 C -0.21 -6.14 5.39 -20.00 -0.11 -6.25 16 4 C 0.58 19.62 6.62 86.76 0.57 20.20 16 5 O -0.57 -22.25 14.10 -3.90 -0.05 -22.31 16 6 N -0.60 -19.48 3.06 -791.50 -2.43 -21.90 16 7 C 0.10 2.80 5.19 86.85 0.45 3.25 16 8 C -0.13 -3.53 6.69 31.99 0.21 -3.32 16 9 C 0.16 5.78 3.53 46.19 0.16 5.94 16 10 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 11 N -0.72 -32.68 3.86 -317.33 -1.22 -33.90 16 12 C -0.22 -11.44 8.48 84.03 0.71 -10.73 16 13 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 14 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 15 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 16 Si 0.96 45.44 29.55 68.60 2.03 47.47 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 20 C 0.12 4.11 3.46 45.35 0.16 4.26 16 21 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 22 C -0.12 -4.95 8.03 71.98 0.58 -4.38 16 23 C 0.16 4.52 9.11 85.41 0.78 5.30 16 24 N -0.50 -14.25 10.30 -187.68 -1.93 -16.18 16 25 C 0.12 2.88 6.61 40.28 0.27 3.15 16 26 C -0.12 -2.17 9.97 22.34 0.22 -1.94 16 27 C -0.08 -0.89 9.94 22.05 0.22 -0.67 16 28 C -0.11 -1.14 9.96 22.05 0.22 -0.92 16 29 C -0.09 -1.34 9.31 22.34 0.21 -1.14 16 30 C -0.12 -2.75 5.74 -21.28 -0.12 -2.88 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.38 6.66 -2.39 -0.02 1.36 16 33 H 0.06 1.60 6.45 -2.39 -0.02 1.58 16 34 H 0.09 2.15 6.77 -2.39 -0.02 2.13 16 35 H 0.06 1.92 7.32 -2.39 -0.02 1.91 16 36 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.37 18.70 7.85 -92.71 -0.73 17.98 16 39 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.04 1.51 6.87 -2.39 -0.02 1.50 16 41 H 0.05 2.42 7.25 -2.39 -0.02 2.40 16 42 H 0.03 1.64 7.55 -2.38 -0.02 1.62 16 43 H 0.16 4.59 5.96 -2.91 -0.02 4.57 16 44 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 46 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 47 H 0.16 1.42 6.50 -2.91 -0.02 1.40 16 Total: -1.00 -70.30 373.45 2.45 -67.86 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.28 Total: 30.73 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.50 Total: 5.38 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -5.30 Total: -129.12 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.30 2.45 -67.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579957.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.700 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds