Wall clock time and date at job start Tue Mar 31 2020 23:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39046 * 121.01844 * 2 1 4 4 C 1.47756 * 120.26688 * 0.02562 * 3 2 1 5 5 O 1.21567 * 119.99989 * 48.55146 * 4 3 2 6 6 N 1.34779 * 120.00441 * 228.55883 * 4 3 2 7 7 C 1.47431 * 125.64280 * 355.18019 * 6 4 3 8 8 C 1.54908 * 104.82624 * 155.91378 * 7 6 4 9 9 C 1.55159 * 101.58682 * 37.01130 * 8 7 6 10 10 H 1.08998 * 110.72192 * 82.85987 * 9 8 7 11 11 N 1.46495 * 110.72009 * 206.13667 * 9 8 7 12 12 C 1.36937 * 119.99965 * 268.51747 * 11 9 8 13 13 H 1.08001 * 120.00314 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00010 * 179.97438 * 12 11 9 15 15 N 1.31630 * 119.99890 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00348 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47257 * 89.99525 * 16 14 12 18 18 H 1.48497 * 109.47498 * 210.00120 * 16 14 12 19 19 H 1.48500 * 109.46872 * 329.99712 * 16 14 12 20 20 C 1.47016 * 125.65066 * 175.23036 * 6 4 3 21 21 H 1.09007 * 109.88335 * 300.58999 * 20 6 4 22 22 C 1.53003 * 109.88617 * 61.60071 * 20 6 4 23 23 C 1.40560 * 119.46926 * 180.29709 * 3 2 1 24 24 N 1.30820 * 121.53509 * 359.43554 * 23 3 2 25 25 C 1.33791 * 121.71858 * 0.55178 * 24 23 3 26 26 C 1.40529 * 120.81436 * 179.65778 * 25 24 23 27 27 C 1.36132 * 119.81532 * 180.02562 * 26 25 24 28 28 C 1.39347 * 121.08903 * 0.04917 * 27 26 25 29 29 C 1.36144 * 120.83968 * 359.97438 * 28 27 26 30 30 C 1.40492 * 121.02039 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47099 * 95.15076 * 1 2 3 32 32 H 1.09005 * 109.46840 * 215.14334 * 1 2 3 33 33 H 1.08999 * 109.47138 * 335.14681 * 1 2 3 34 34 H 1.08995 * 110.36488 * 274.74861 * 7 6 4 35 35 H 1.08991 * 110.36629 * 37.07381 * 7 6 4 36 36 H 1.09004 * 111.00644 * 155.08339 * 8 7 6 37 37 H 1.09002 * 111.00454 * 278.89185 * 8 7 6 38 38 H 0.97004 * 120.00584 * 88.51716 * 11 9 8 39 39 H 0.97002 * 119.99616 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46713 * 58.54231 * 22 20 6 41 41 H 1.08996 * 109.47415 * 178.54305 * 22 20 6 42 42 H 1.09001 * 109.47180 * 298.54826 * 22 20 6 43 43 H 1.07997 * 119.23016 * 179.70139 * 23 3 2 44 44 H 1.07995 * 120.09355 * 0.03190 * 26 25 24 45 45 H 1.07999 * 119.45867 * 180.02562 * 27 26 25 46 46 H 1.07991 * 119.58182 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.18866 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5136 2.4875 0.0006 5 8 0.6107 2.6856 0.7901 6 7 1.8670 3.4499 -0.8743 7 6 3.0015 3.3829 -1.8134 8 6 2.6289 4.3606 -2.9556 9 6 1.9228 5.4993 -2.1732 10 1 2.6541 6.1916 -1.7559 11 7 0.9701 6.2057 -3.0332 12 6 1.3718 7.3086 -3.7385 13 1 2.3909 7.6575 -3.6612 14 6 0.4692 7.9776 -4.5538 15 7 0.8552 9.0381 -5.2314 16 14 -1.2934 7.3740 -4.6882 17 1 -2.1235 8.0342 -3.6488 18 1 -1.8288 7.7048 -6.0332 19 1 -1.3292 5.9027 -4.4895 20 6 1.1856 4.7408 -1.0495 21 1 0.1455 4.5758 -1.3309 22 6 1.2513 5.5447 0.2507 23 6 3.6286 1.1536 -0.0063 24 7 4.2825 0.0206 -0.0013 25 6 3.6483 -1.1575 -0.0008 26 6 4.3698 -2.3634 -0.0026 27 6 3.7038 -3.5507 -0.0026 28 6 2.3110 -3.5944 -0.0019 29 6 1.5768 -2.4479 -0.0007 30 6 2.2310 -1.2040 -0.0005 31 1 -0.3633 -0.0923 -1.0235 32 1 -0.3633 -0.8404 0.5916 33 1 -0.3633 0.9325 0.4319 34 1 3.9198 3.7052 -1.3225 35 1 3.1131 2.3706 -2.2017 36 1 3.5215 4.7293 -3.4612 37 1 1.9467 3.8915 -3.6646 38 1 0.0548 5.8923 -3.1030 39 1 0.2243 9.5058 -5.8008 40 1 2.2935 5.6990 0.5301 41 1 0.7671 6.5103 0.1058 42 1 0.7402 4.9971 1.0427 43 1 4.1812 2.0815 -0.0112 44 1 5.4497 -2.3484 -0.0038 45 1 4.2640 -4.4740 -0.0035 46 1 1.8076 -4.5498 -0.0023 47 1 0.4977 -2.4940 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986579959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:00 Heat of formation + Delta-G solvation = 40.553419 kcal Electronic energy + Delta-G solvation = -29152.543024 eV Core-core repulsion = 25300.533781 eV Total energy + Delta-G solvation = -3852.009243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41651 -40.00210 -37.84480 -37.10726 -34.82431 -34.34123 -32.10260 -31.21675 -30.78428 -30.66194 -29.55738 -28.11499 -25.47936 -24.76443 -24.21183 -22.75313 -22.59393 -21.35181 -20.45255 -19.70248 -18.22596 -18.01780 -17.65483 -16.88734 -16.45479 -15.97932 -15.06371 -14.95484 -14.85462 -14.58351 -14.44282 -14.25963 -14.08715 -13.68290 -13.48505 -13.30674 -13.09709 -12.96265 -12.76496 -12.44319 -12.31819 -12.15724 -12.07101 -11.92688 -11.89548 -11.79870 -11.36528 -11.24873 -10.93340 -10.68927 -10.47868 -10.39202 -10.22087 -10.07745 -9.68079 -9.52224 -9.12067 -9.01249 -8.62148 -8.51976 -7.38952 -5.85555 -3.23168 -0.04198 0.35261 1.56130 2.33720 2.74040 2.98389 3.32605 3.35801 3.41225 3.74466 3.92267 4.15524 4.25609 4.34736 4.47204 4.51624 4.58427 4.75125 4.84053 4.86252 5.02936 5.07317 5.10638 5.14387 5.31284 5.33622 5.34048 5.46200 5.52965 5.56081 5.60833 5.65400 5.66797 5.75404 5.82351 5.85912 5.95574 6.00685 6.10861 6.14416 6.16321 6.28802 6.44822 6.46593 6.48218 6.54846 6.73959 7.51138 7.57123 7.87951 8.08755 8.32744 9.09093 9.81635 9.99527 11.32067 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002606 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.666496 B =10740.147255 C =10909.734751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.035 3.965 3 C -0.186 4.186 4 C 0.580 3.420 5 O -0.532 6.532 6 N -0.600 5.600 7 C 0.093 3.907 8 C -0.155 4.155 9 C 0.182 3.818 10 H 0.079 0.921 11 N -0.738 5.738 12 C -0.249 4.249 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.882 3.118 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.124 3.876 21 H 0.075 0.925 22 C -0.157 4.157 23 C 0.167 3.833 24 N -0.479 5.479 25 C 0.141 3.859 26 C -0.097 4.097 27 C -0.095 4.095 28 C -0.122 4.122 29 C -0.088 4.088 30 C -0.109 4.109 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.363 0.637 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.165 0.835 44 H 0.137 0.863 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -25.139 11.428 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.192 4.192 4 C 0.368 3.632 5 O -0.410 6.410 6 N -0.333 5.333 7 C -0.030 4.030 8 C -0.196 4.196 9 C 0.071 3.929 10 H 0.097 0.903 11 N -0.379 5.379 12 C -0.378 4.378 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.576 5.576 16 Si 0.712 3.288 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.203 1.203 20 C 0.020 3.980 21 H 0.093 0.907 22 C -0.215 4.215 23 C -0.007 4.007 24 N -0.187 5.187 25 C 0.020 3.980 26 C -0.116 4.116 27 C -0.115 4.115 28 C -0.140 4.140 29 C -0.106 4.106 30 C -0.111 4.111 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.196 0.804 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.182 0.818 44 H 0.155 0.845 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.180 -24.950 11.779 28.073 hybrid contribution -2.027 -0.378 -0.347 2.091 sum 3.153 -25.329 11.432 27.967 Atomic orbital electron populations 1.21214 0.89255 1.05956 1.03432 1.20501 0.96931 0.90503 0.89393 1.20756 0.95455 0.94075 1.08882 1.17582 0.82939 0.82410 0.80262 1.90731 1.31184 1.80406 1.38679 1.48511 1.31143 1.16874 1.36781 1.22549 0.88934 1.00712 0.90774 1.23552 1.02206 0.97113 0.96726 1.21230 0.91610 0.91583 0.88520 0.90344 1.42694 1.09126 1.33081 1.53018 1.19026 0.97923 1.01692 1.19170 0.88942 1.24666 0.97677 0.97283 0.99093 1.69699 1.34744 1.20636 1.32553 0.86593 0.86446 0.78326 0.77399 1.20902 1.21648 1.20332 1.22029 0.97078 0.81880 0.96975 0.90661 1.22080 1.02058 1.00399 0.96942 1.23100 0.89926 0.96696 0.90929 1.67978 1.39368 0.97426 1.13954 1.18999 0.89578 0.92645 0.96797 1.20831 1.00554 0.90073 1.00119 1.20978 0.94514 0.98048 0.97931 1.20941 0.94132 0.98561 1.00368 1.21086 1.00292 0.91020 0.98224 1.18677 0.94008 0.93954 1.04488 0.89953 0.90383 0.87812 0.91033 0.91163 0.89854 0.90751 0.80374 0.92914 0.92706 0.91015 0.91672 0.81832 0.84489 0.85139 0.85334 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 36.01 0.33 -1.13 16 2 C 0.04 0.42 5.98 -103.47 -0.62 -0.20 16 3 C -0.19 -2.39 5.20 -104.83 -0.55 -2.93 16 4 C 0.58 8.48 6.75 -12.37 -0.08 8.40 16 5 O -0.53 -9.06 13.68 5.31 0.07 -8.99 16 6 N -0.60 -8.52 3.07 -164.15 -0.50 -9.02 16 7 C 0.09 1.15 5.42 -2.53 -0.01 1.13 16 8 C -0.15 -2.34 6.77 -24.58 -0.17 -2.50 16 9 C 0.18 3.20 3.14 -66.09 -0.21 2.99 16 10 H 0.08 1.40 7.80 -51.93 -0.41 0.99 16 11 N -0.74 -16.33 5.03 -51.65 -0.26 -16.59 16 12 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 13 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 14 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 15 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 16 Si 0.88 21.47 27.74 -169.99 -4.71 16.76 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 20 C 0.12 1.98 3.24 -66.95 -0.22 1.77 16 21 H 0.08 1.31 7.72 -51.93 -0.40 0.91 16 22 C -0.16 -2.39 9.10 37.16 0.34 -2.06 16 23 C 0.17 1.97 9.28 -17.11 -0.16 1.81 16 24 N -0.48 -5.93 10.30 -10.68 -0.11 -6.04 16 25 C 0.14 1.63 6.61 -84.79 -0.56 1.07 16 26 C -0.10 -0.88 9.97 -39.48 -0.39 -1.27 16 27 C -0.09 -0.66 9.94 -39.93 -0.40 -1.06 16 28 C -0.12 -0.84 9.96 -39.92 -0.40 -1.23 16 29 C -0.09 -0.73 9.31 -39.46 -0.37 -1.10 16 30 C -0.11 -1.20 5.74 -106.81 -0.61 -1.81 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.62 6.79 -51.93 -0.35 0.27 16 33 H 0.10 1.31 5.43 -51.93 -0.28 1.03 16 34 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 35 H 0.07 0.80 7.05 -51.93 -0.37 0.43 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.36 8.06 5.43 -40.82 -0.22 7.84 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.03 6.73 -51.93 -0.35 0.68 16 43 H 0.16 1.63 6.65 -52.49 -0.35 1.28 16 44 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.13 0.84 6.56 -52.49 -0.34 0.50 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -32.30 374.92 -9.85 -42.15 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.43 Total: 8.32 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -4.33 Total: -4.74 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.10 Total: -59.14 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.30 -9.85 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.700 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds