Wall clock time and date at job start Tue Mar 31 2020 23:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39046 * 121.01844 * 2 1 4 4 C 1.47756 * 120.26688 * 0.02562 * 3 2 1 5 5 O 1.21567 * 119.99989 * 48.55146 * 4 3 2 6 6 N 1.34779 * 120.00441 * 228.55883 * 4 3 2 7 7 C 1.47431 * 125.64280 * 355.18019 * 6 4 3 8 8 C 1.54908 * 104.82624 * 155.91378 * 7 6 4 9 9 C 1.55159 * 101.58682 * 37.01130 * 8 7 6 10 10 H 1.08998 * 110.72192 * 82.85987 * 9 8 7 11 11 N 1.46495 * 110.72009 * 206.13667 * 9 8 7 12 12 C 1.36937 * 119.99965 * 268.51747 * 11 9 8 13 13 H 1.08001 * 120.00314 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00010 * 179.97438 * 12 11 9 15 15 N 1.31630 * 119.99890 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00348 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47257 * 89.99525 * 16 14 12 18 18 H 1.48497 * 109.47498 * 210.00120 * 16 14 12 19 19 H 1.48500 * 109.46872 * 329.99712 * 16 14 12 20 20 C 1.47016 * 125.65066 * 175.23036 * 6 4 3 21 21 H 1.09007 * 109.88335 * 300.58999 * 20 6 4 22 22 C 1.53003 * 109.88617 * 61.60071 * 20 6 4 23 23 C 1.40560 * 119.46926 * 180.29709 * 3 2 1 24 24 N 1.30820 * 121.53509 * 359.43554 * 23 3 2 25 25 C 1.33791 * 121.71858 * 0.55178 * 24 23 3 26 26 C 1.40529 * 120.81436 * 179.65778 * 25 24 23 27 27 C 1.36132 * 119.81532 * 180.02562 * 26 25 24 28 28 C 1.39347 * 121.08903 * 0.04917 * 27 26 25 29 29 C 1.36144 * 120.83968 * 359.97438 * 28 27 26 30 30 C 1.40492 * 121.02039 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47099 * 95.15076 * 1 2 3 32 32 H 1.09005 * 109.46840 * 215.14334 * 1 2 3 33 33 H 1.08999 * 109.47138 * 335.14681 * 1 2 3 34 34 H 1.08995 * 110.36488 * 274.74861 * 7 6 4 35 35 H 1.08991 * 110.36629 * 37.07381 * 7 6 4 36 36 H 1.09004 * 111.00644 * 155.08339 * 8 7 6 37 37 H 1.09002 * 111.00454 * 278.89185 * 8 7 6 38 38 H 0.97004 * 120.00584 * 88.51716 * 11 9 8 39 39 H 0.97002 * 119.99616 * 180.02562 * 15 14 12 40 40 H 1.09001 * 109.46713 * 58.54231 * 22 20 6 41 41 H 1.08996 * 109.47415 * 178.54305 * 22 20 6 42 42 H 1.09001 * 109.47180 * 298.54826 * 22 20 6 43 43 H 1.07997 * 119.23016 * 179.70139 * 23 3 2 44 44 H 1.07995 * 120.09355 * 0.03190 * 26 25 24 45 45 H 1.07999 * 119.45867 * 180.02562 * 27 26 25 46 46 H 1.07991 * 119.58182 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.18866 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2235 1.1916 0.0000 4 6 1.5136 2.4875 0.0006 5 8 0.6107 2.6856 0.7901 6 7 1.8670 3.4499 -0.8743 7 6 3.0015 3.3829 -1.8134 8 6 2.6289 4.3606 -2.9556 9 6 1.9228 5.4993 -2.1732 10 1 2.6541 6.1916 -1.7559 11 7 0.9701 6.2057 -3.0332 12 6 1.3718 7.3086 -3.7385 13 1 2.3909 7.6575 -3.6612 14 6 0.4692 7.9776 -4.5538 15 7 0.8552 9.0381 -5.2314 16 14 -1.2934 7.3740 -4.6882 17 1 -2.1235 8.0342 -3.6488 18 1 -1.8288 7.7048 -6.0332 19 1 -1.3292 5.9027 -4.4895 20 6 1.1856 4.7408 -1.0495 21 1 0.1455 4.5758 -1.3309 22 6 1.2513 5.5447 0.2507 23 6 3.6286 1.1536 -0.0063 24 7 4.2825 0.0206 -0.0013 25 6 3.6483 -1.1575 -0.0008 26 6 4.3698 -2.3634 -0.0026 27 6 3.7038 -3.5507 -0.0026 28 6 2.3110 -3.5944 -0.0019 29 6 1.5768 -2.4479 -0.0007 30 6 2.2310 -1.2040 -0.0005 31 1 -0.3633 -0.0923 -1.0235 32 1 -0.3633 -0.8404 0.5916 33 1 -0.3633 0.9325 0.4319 34 1 3.9198 3.7052 -1.3225 35 1 3.1131 2.3706 -2.2017 36 1 3.5215 4.7293 -3.4612 37 1 1.9467 3.8915 -3.6646 38 1 0.0548 5.8923 -3.1030 39 1 0.2243 9.5058 -5.8008 40 1 2.2935 5.6990 0.5301 41 1 0.7671 6.5103 0.1058 42 1 0.7402 4.9971 1.0427 43 1 4.1812 2.0815 -0.0112 44 1 5.4497 -2.3484 -0.0038 45 1 4.2640 -4.4740 -0.0035 46 1 1.8076 -4.5498 -0.0023 47 1 0.4977 -2.4940 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986579959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:00 Heat of formation + Delta-G solvation = 20.972980 kcal Electronic energy + Delta-G solvation = -29153.392095 eV Core-core repulsion = 25300.533781 eV Total energy + Delta-G solvation = -3852.858315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26474 -41.07785 -39.03636 -37.90165 -36.09555 -35.59289 -33.71113 -32.57813 -31.87951 -31.35818 -30.84713 -28.96395 -26.97289 -25.65648 -25.02406 -24.39521 -23.67155 -22.13626 -21.80905 -20.85655 -19.58004 -19.09837 -18.79814 -17.96580 -17.52238 -16.84558 -16.48794 -16.05826 -15.85658 -15.74749 -15.52122 -15.30513 -14.96903 -14.85047 -14.69222 -14.55672 -14.20274 -14.11177 -13.95983 -13.66789 -13.49462 -13.34936 -13.11078 -13.04763 -12.80517 -12.72031 -12.65230 -12.55308 -12.42868 -12.16507 -12.06358 -11.82473 -11.60158 -11.19362 -11.19017 -10.96880 -10.49012 -9.87826 -9.75286 -9.33282 -9.24264 -8.02058 -5.36347 -0.79280 -0.40028 0.83004 1.38166 1.40123 1.43193 1.46573 1.72157 2.01391 2.47702 3.00465 3.12016 3.27024 3.35421 3.42962 3.49531 3.54988 3.63822 3.82287 3.82963 3.96490 4.11820 4.18806 4.26330 4.28803 4.31728 4.39747 4.42725 4.45214 4.52944 4.56370 4.66045 4.66641 4.85873 4.92174 4.94142 5.01244 5.02640 5.11577 5.19107 5.22397 5.28913 5.37446 5.37705 5.42504 5.47534 5.77593 5.84713 6.21348 6.39085 6.75136 6.95736 7.05750 7.80232 7.97991 9.18748 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019858 B = 0.002606 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.666496 B =10740.147255 C =10909.734751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.032 3.968 3 C -0.207 4.207 4 C 0.584 3.416 5 O -0.561 6.561 6 N -0.600 5.600 7 C 0.102 3.898 8 C -0.148 4.148 9 C 0.175 3.825 10 H 0.077 0.923 11 N -0.742 5.742 12 C -0.224 4.224 13 H 0.067 0.933 14 C -0.059 4.059 15 N -0.980 5.980 16 Si 0.946 3.054 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.256 1.256 20 C 0.131 3.869 21 H 0.060 0.940 22 C -0.149 4.149 23 C 0.162 3.838 24 N -0.495 5.495 25 C 0.118 3.882 26 C -0.117 4.117 27 C -0.080 4.080 28 C -0.114 4.114 29 C -0.097 4.097 30 C -0.124 4.124 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.364 0.636 39 H 0.257 0.743 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.177 0.823 44 H 0.145 0.855 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -29.184 12.222 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 C -0.212 4.212 4 C 0.373 3.627 5 O -0.441 6.441 6 N -0.332 5.332 7 C -0.020 4.020 8 C -0.188 4.188 9 C 0.066 3.934 10 H 0.095 0.905 11 N -0.385 5.385 12 C -0.355 4.355 13 H 0.085 0.915 14 C -0.250 4.250 15 N -0.630 5.630 16 Si 0.774 3.226 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.181 1.181 20 C 0.027 3.973 21 H 0.078 0.922 22 C -0.207 4.207 23 C -0.011 4.011 24 N -0.203 5.203 25 C -0.002 4.002 26 C -0.136 4.136 27 C -0.100 4.100 28 C -0.132 4.132 29 C -0.115 4.115 30 C -0.126 4.126 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.197 0.803 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.194 0.806 44 H 0.163 0.837 45 H 0.182 0.818 46 H 0.180 0.820 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.274 -29.062 12.608 32.115 hybrid contribution -1.943 0.683 -0.517 2.123 sum 3.331 -28.378 12.090 31.026 Atomic orbital electron populations 1.21198 0.88508 1.05580 1.04193 1.20756 0.97609 0.90701 0.88621 1.20620 0.95892 0.93245 1.11438 1.17844 0.82443 0.82821 0.79548 1.90713 1.32583 1.80961 1.39883 1.48485 1.31454 1.16121 1.37127 1.22606 0.89073 1.00822 0.89472 1.23382 1.01776 0.96485 0.97188 1.21401 0.91083 0.92146 0.88804 0.90505 1.42674 1.10018 1.32402 1.53363 1.18990 0.96575 1.01955 1.17955 0.91517 1.25389 1.01942 0.97930 0.99771 1.69863 1.36129 1.22648 1.34382 0.85546 0.81327 0.78968 0.76735 1.20737 1.22415 1.18051 1.21751 0.96190 0.82816 0.96523 0.92155 1.21996 1.02677 0.99686 0.96333 1.23229 0.89588 0.97210 0.91086 1.67992 1.39782 0.97921 1.14611 1.19427 0.90327 0.93171 0.97314 1.21061 1.01171 0.90056 1.01285 1.21430 0.94952 0.98523 0.95081 1.21400 0.94185 0.99486 0.98103 1.21382 1.01513 0.90440 0.98181 1.18869 0.93953 0.94660 1.05153 0.89023 0.88013 0.90325 0.88442 0.89661 0.89342 0.91822 0.80273 0.93382 0.91458 0.91789 0.92321 0.80605 0.83749 0.81824 0.81954 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.15 71.24 0.65 -2.04 16 2 C 0.03 0.72 5.98 -19.12 -0.11 0.60 16 3 C -0.21 -5.16 5.20 -20.00 -0.10 -5.26 16 4 C 0.58 16.86 6.75 86.76 0.59 17.44 16 5 O -0.56 -19.28 13.68 -3.93 -0.05 -19.33 16 6 N -0.60 -16.49 3.07 -791.51 -2.43 -18.92 16 7 C 0.10 2.34 5.42 86.85 0.47 2.81 16 8 C -0.15 -4.30 6.77 31.99 0.22 -4.08 16 9 C 0.18 6.07 3.14 46.18 0.14 6.22 16 10 H 0.08 2.71 7.80 -2.39 -0.02 2.69 16 11 N -0.74 -32.73 5.03 -317.33 -1.60 -34.32 16 12 C -0.22 -12.08 10.44 84.03 0.88 -11.20 16 13 H 0.07 3.89 8.06 -2.91 -0.02 3.87 16 14 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 15 N -0.98 -61.31 13.97 21.65 0.30 -61.01 16 16 Si 0.95 44.83 27.74 68.60 1.90 46.73 16 17 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 18 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 19 H -0.26 -11.04 6.52 99.48 0.65 -10.39 16 20 C 0.13 4.15 3.24 45.34 0.15 4.30 16 21 H 0.06 2.10 7.72 -2.38 -0.02 2.08 16 22 C -0.15 -4.51 9.10 71.98 0.65 -3.85 16 23 C 0.16 3.69 9.28 85.41 0.79 4.48 16 24 N -0.49 -11.81 10.30 -187.69 -1.93 -13.75 16 25 C 0.12 2.57 6.61 40.29 0.27 2.83 16 26 C -0.12 -1.86 9.97 22.34 0.22 -1.63 16 27 C -0.08 -0.81 9.94 22.05 0.22 -0.59 16 28 C -0.11 -1.08 9.96 22.05 0.22 -0.86 16 29 C -0.10 -1.31 9.31 22.35 0.21 -1.11 16 30 C -0.12 -2.52 5.74 -21.28 -0.12 -2.64 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.41 6.79 -2.38 -0.02 1.39 16 33 H 0.08 1.97 5.43 -2.39 -0.01 1.96 16 34 H 0.10 1.78 7.51 -2.39 -0.02 1.76 16 35 H 0.09 1.77 7.05 -2.39 -0.02 1.75 16 36 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.36 15.89 5.43 -92.71 -0.50 15.39 16 39 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.86 6.73 -2.39 -0.02 1.84 16 43 H 0.18 3.28 6.65 -2.91 -0.02 3.26 16 44 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 46 H 0.16 0.46 8.06 -2.91 -0.02 0.43 16 47 H 0.15 1.38 6.56 -2.91 -0.02 1.36 16 Total: -1.00 -72.24 374.92 2.44 -69.80 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.44 Total: 28.26 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.80 Total: 2.54 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -5.65 Total: -128.00 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -72.24 2.44 -69.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.776 kcal (2) G-P(sol) polarization free energy of solvation -72.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds