Wall clock time and date at job start Tue Mar 31 2020 23:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39043 * 121.02028 * 2 1 4 4 C 1.47762 * 120.26744 * 0.02562 * 3 2 1 5 5 O 1.21562 * 119.99530 * 45.59251 * 4 3 2 6 6 N 1.34772 * 119.99992 * 225.59148 * 4 3 2 7 7 C 1.47418 * 125.65040 * 4.54855 * 6 4 3 8 8 C 1.55126 * 104.72282 * 155.81812 * 7 6 4 9 9 H 1.09004 * 110.90710 * 155.27490 * 8 7 6 10 10 N 1.46499 * 111.22526 * 279.17792 * 8 7 6 11 11 C 1.36940 * 120.00168 * 267.20525 * 10 8 7 12 12 H 1.08003 * 119.99820 * 0.02562 * 11 10 8 13 13 C 1.38807 * 120.00381 * 180.02562 * 11 10 8 14 14 N 1.31619 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00494 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47083 * 89.99672 * 15 13 11 17 17 H 1.48496 * 109.47605 * 209.99834 * 15 13 11 18 18 H 1.48505 * 109.46873 * 329.99976 * 15 13 11 19 19 C 1.55150 * 101.48609 * 37.29409 * 8 7 6 20 20 C 1.47019 * 125.64443 * 184.85811 * 6 4 3 21 21 H 1.09003 * 109.88591 * 300.43767 * 20 6 4 22 22 C 1.53002 * 109.88371 * 61.60578 * 20 6 4 23 23 C 1.40562 * 119.46268 * 179.97438 * 3 2 1 24 24 N 1.30822 * 121.54223 * 0.02562 * 23 3 2 25 25 C 1.33795 * 121.71825 * 359.97438 * 24 23 3 26 26 C 1.40527 * 120.82234 * 180.02562 * 25 24 23 27 27 C 1.36139 * 119.81359 * 179.97438 * 26 25 24 28 28 C 1.39345 * 121.09201 * 359.97438 * 27 26 25 29 29 C 1.36138 * 120.83803 * 359.97438 * 28 27 26 30 30 C 1.40499 * 121.01316 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46830 * 84.03724 * 1 2 3 32 32 H 1.08997 * 109.47129 * 204.03472 * 1 2 3 33 33 H 1.08997 * 109.47070 * 324.03614 * 1 2 3 34 34 H 1.09000 * 110.36876 * 274.74796 * 7 6 4 35 35 H 1.09006 * 110.36696 * 37.06893 * 7 6 4 36 36 H 0.97003 * 119.99981 * 87.20615 * 10 8 7 37 37 H 0.97008 * 120.00319 * 179.97438 * 14 13 11 38 38 H 1.09003 * 110.72657 * 205.96404 * 19 8 7 39 39 H 1.09000 * 110.71863 * 82.69734 * 19 8 7 40 40 H 1.08999 * 109.47095 * 58.54548 * 22 20 6 41 41 H 1.09004 * 109.47100 * 178.53968 * 22 20 6 42 42 H 1.09000 * 109.46904 * 298.54398 * 22 20 6 43 43 H 1.08002 * 119.22994 * 180.02562 * 23 3 2 44 44 H 1.07994 * 120.09741 * 359.97438 * 26 25 24 45 45 H 1.07996 * 119.45241 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.57985 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.19166 * 179.74387 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4875 0.0006 5 8 0.5759 2.6664 0.7531 6 7 1.9060 3.4711 -0.8331 7 6 2.9596 3.3594 -1.8581 8 6 2.6107 4.4518 -2.9028 9 1 3.4995 4.7629 -3.4519 10 7 1.5640 3.9938 -3.8197 11 6 1.9045 3.3979 -5.0047 12 1 2.9447 3.2651 -5.2631 13 6 0.9127 2.9644 -5.8738 14 7 -0.3550 3.1257 -5.5587 15 14 1.3771 2.1509 -7.4899 16 1 1.4962 0.6842 -7.2896 17 1 0.3278 2.4284 -8.5034 18 1 2.6766 2.6932 -7.9616 19 6 2.0909 5.5953 -1.9922 20 6 1.3583 4.8351 -0.8666 21 1 0.2895 4.8004 -1.0776 22 6 1.6046 5.5278 0.4751 23 6 3.6287 1.1534 0.0005 24 7 4.2825 0.0202 0.0006 25 6 3.6482 -1.1578 0.0006 26 6 4.3695 -2.3639 0.0011 27 6 3.7031 -3.5510 0.0016 28 6 2.3103 -3.5945 0.0022 29 6 1.5764 -2.4479 0.0027 30 6 2.2309 -1.2041 0.0005 31 1 -0.3633 0.1068 -1.0221 32 1 -0.3633 -0.9385 0.4185 33 1 -0.3633 0.8318 0.6035 34 1 3.9385 3.5505 -1.4184 35 1 2.9365 2.3722 -2.3199 36 1 0.6297 4.1127 -3.5875 37 1 -1.0481 2.8231 -6.1662 38 1 1.3994 6.2382 -2.5369 39 1 2.9214 6.1749 -1.5889 40 1 2.6749 5.5522 0.6804 41 1 1.2193 6.5466 0.4342 42 1 1.0953 4.9782 1.2667 43 1 4.1815 2.0812 0.0010 44 1 5.4493 -2.3491 0.0011 45 1 4.2632 -4.4744 0.0025 46 1 1.8067 -4.5499 0.0030 47 1 0.4973 -2.4937 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989218079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:09 Heat of formation + Delta-G solvation = 34.811647 kcal Electronic energy + Delta-G solvation = -29805.783342 eV Core-core repulsion = 25953.525116 eV Total energy + Delta-G solvation = -3852.258225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12376 -39.74307 -37.60836 -36.83871 -34.55329 -34.00092 -32.07944 -31.35589 -30.45072 -30.23320 -28.51731 -27.86024 -25.57254 -24.53058 -23.94758 -23.72486 -22.06439 -21.09062 -20.08261 -19.31090 -17.98188 -17.76368 -17.28370 -16.71034 -16.17112 -15.70291 -14.80197 -14.74475 -14.56459 -14.53926 -14.19549 -14.03064 -13.82098 -13.54766 -13.35854 -13.09130 -12.94980 -12.90067 -12.57623 -12.26181 -12.12159 -11.95356 -11.84185 -11.76059 -11.66985 -11.50580 -11.17436 -10.99562 -10.79497 -10.69130 -10.34930 -10.12675 -10.05627 -9.94987 -9.75942 -9.28656 -9.08105 -8.83773 -8.32347 -8.23698 -7.08108 -5.86188 -3.16644 0.24107 0.62699 1.83983 2.60470 3.05144 3.33529 3.37635 3.43327 3.44622 4.03275 4.19118 4.43149 4.50159 4.54335 4.64020 4.71977 4.84351 5.01790 5.03568 5.10432 5.18829 5.29303 5.33518 5.35459 5.48591 5.54976 5.61769 5.64830 5.72640 5.76085 5.82196 5.84563 5.91418 5.94047 5.97529 6.12196 6.16637 6.18654 6.25385 6.36183 6.39078 6.39871 6.44648 6.55200 6.65983 6.71523 6.76913 7.61224 7.81379 7.85623 8.31010 8.39236 9.43131 9.97737 10.32320 11.35616 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.004419 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.136442 B = 6334.605305 C = 8198.675447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.040 3.960 3 C -0.185 4.185 4 C 0.584 3.416 5 O -0.542 6.542 6 N -0.590 5.590 7 C 0.065 3.935 8 C 0.170 3.830 9 H 0.076 0.924 10 N -0.710 5.710 11 C -0.248 4.248 12 H 0.072 0.928 13 C -0.007 4.007 14 N -0.928 5.928 15 Si 0.905 3.095 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.280 1.280 19 C -0.139 4.139 20 C 0.138 3.862 21 H 0.076 0.924 22 C -0.159 4.159 23 C 0.170 3.830 24 N -0.483 5.483 25 C 0.142 3.858 26 C -0.099 4.099 27 C -0.096 4.096 28 C -0.125 4.125 29 C -0.085 4.085 30 C -0.109 4.109 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.162 0.838 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 -6.489 13.515 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 C -0.190 4.190 4 C 0.372 3.628 5 O -0.422 6.422 6 N -0.321 5.321 7 C -0.061 4.061 8 C 0.057 3.943 9 H 0.094 0.906 10 N -0.349 5.349 11 C -0.379 4.379 12 H 0.090 0.910 13 C -0.204 4.204 14 N -0.575 5.575 15 Si 0.736 3.264 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.206 1.206 19 C -0.178 4.178 20 C 0.035 3.965 21 H 0.094 0.906 22 C -0.218 4.218 23 C -0.003 4.003 24 N -0.191 5.191 25 C 0.021 3.979 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.143 4.143 29 C -0.104 4.104 30 C -0.111 4.111 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.179 0.821 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.247 -6.613 13.758 16.898 hybrid contribution -0.911 -0.545 -0.972 1.440 sum 6.336 -7.158 12.786 15.964 Atomic orbital electron populations 1.21205 0.89220 1.04706 1.04542 1.20528 0.97022 0.90552 0.88762 1.20708 0.95337 0.94187 1.08739 1.17519 0.82896 0.82436 0.79993 1.90691 1.28593 1.81326 1.41564 1.48345 1.38025 1.11116 1.34630 1.23585 0.88904 1.03923 0.89713 1.21360 0.93576 0.90148 0.89217 0.90649 1.42325 1.03947 1.70434 1.18229 1.19236 0.92531 1.31469 0.94644 0.90967 1.24747 0.95193 1.01513 0.98926 1.69667 0.98465 1.51958 1.37426 0.86225 0.77334 0.79304 0.83526 1.21722 1.21688 1.20584 1.23098 1.00492 0.98205 0.96019 1.21516 0.98761 0.80914 0.95277 0.90579 1.22134 1.01619 1.00377 0.97627 1.23018 0.89980 0.96527 0.90734 1.67949 1.39379 0.97434 1.14373 1.18970 0.89581 0.92624 0.96740 1.20795 1.00403 0.90122 1.00393 1.20940 0.94503 0.97935 0.98199 1.20903 0.94112 0.98473 1.00854 1.21109 1.00325 0.91066 0.97894 1.18678 0.94023 0.93976 1.04429 0.89477 0.90865 0.87750 0.92406 0.90311 0.77993 0.93383 0.89675 0.90648 0.92748 0.91824 0.91734 0.82096 0.84645 0.85301 0.85452 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.23 36.01 0.33 -1.69 16 2 C 0.04 0.63 5.98 -103.47 -0.62 0.01 16 3 C -0.18 -3.03 5.18 -104.83 -0.54 -3.57 16 4 C 0.58 10.30 6.76 -12.37 -0.08 10.22 16 5 O -0.54 -10.54 13.95 5.31 0.07 -10.46 16 6 N -0.59 -9.84 3.06 -164.02 -0.50 -10.34 16 7 C 0.06 1.06 5.13 -2.42 -0.01 1.05 16 8 C 0.17 3.03 3.72 -65.67 -0.24 2.79 16 9 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 10 N -0.71 -16.65 5.25 -51.24 -0.27 -16.92 16 11 C -0.25 -6.53 9.96 -15.06 -0.15 -6.68 16 12 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 13 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 14 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 15 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.14 -2.05 6.07 -24.90 -0.15 -2.20 16 20 C 0.14 2.16 3.43 -66.95 -0.23 1.93 16 21 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 22 C -0.16 -2.10 9.11 37.16 0.34 -1.77 16 23 C 0.17 2.57 9.52 -17.11 -0.16 2.41 16 24 N -0.48 -7.49 10.30 -10.67 -0.11 -7.60 16 25 C 0.14 2.10 6.61 -84.79 -0.56 1.54 16 26 C -0.10 -1.18 9.97 -39.47 -0.39 -1.57 16 27 C -0.10 -0.94 9.94 -39.92 -0.40 -1.33 16 28 C -0.13 -1.24 9.96 -39.92 -0.40 -1.63 16 29 C -0.09 -1.00 9.32 -39.47 -0.37 -1.37 16 30 C -0.11 -1.59 5.74 -106.81 -0.61 -2.20 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.82 6.22 -51.93 -0.32 0.50 16 33 H 0.10 1.66 5.73 -51.93 -0.30 1.36 16 34 H 0.06 0.77 7.27 -51.93 -0.38 0.40 16 35 H 0.08 1.49 7.53 -51.93 -0.39 1.10 16 36 H 0.39 9.89 7.86 -40.82 -0.32 9.57 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.96 7.04 -51.93 -0.37 0.59 16 43 H 0.16 2.08 6.66 -52.49 -0.35 1.73 16 44 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.30 6.31 -52.48 -0.33 0.97 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -31.80 379.20 -10.25 -42.05 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.51 Total: 11.65 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -4.35 Total: -4.37 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.16 Total: -61.44 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.80 -10.25 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989218079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.864 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds