Wall clock time and date at job start Tue Mar 31 2020 23:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39043 * 121.02028 * 2 1 4 4 C 1.47762 * 120.26744 * 0.02562 * 3 2 1 5 5 O 1.21562 * 119.99530 * 45.59251 * 4 3 2 6 6 N 1.34772 * 119.99992 * 225.59148 * 4 3 2 7 7 C 1.47418 * 125.65040 * 4.54855 * 6 4 3 8 8 C 1.55126 * 104.72282 * 155.81812 * 7 6 4 9 9 H 1.09004 * 110.90710 * 155.27490 * 8 7 6 10 10 N 1.46499 * 111.22526 * 279.17792 * 8 7 6 11 11 C 1.36940 * 120.00168 * 267.20525 * 10 8 7 12 12 H 1.08003 * 119.99820 * 0.02562 * 11 10 8 13 13 C 1.38807 * 120.00381 * 180.02562 * 11 10 8 14 14 N 1.31619 * 119.99814 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00494 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47083 * 89.99672 * 15 13 11 17 17 H 1.48496 * 109.47605 * 209.99834 * 15 13 11 18 18 H 1.48505 * 109.46873 * 329.99976 * 15 13 11 19 19 C 1.55150 * 101.48609 * 37.29409 * 8 7 6 20 20 C 1.47019 * 125.64443 * 184.85811 * 6 4 3 21 21 H 1.09003 * 109.88591 * 300.43767 * 20 6 4 22 22 C 1.53002 * 109.88371 * 61.60578 * 20 6 4 23 23 C 1.40562 * 119.46268 * 179.97438 * 3 2 1 24 24 N 1.30822 * 121.54223 * 0.02562 * 23 3 2 25 25 C 1.33795 * 121.71825 * 359.97438 * 24 23 3 26 26 C 1.40527 * 120.82234 * 180.02562 * 25 24 23 27 27 C 1.36139 * 119.81359 * 179.97438 * 26 25 24 28 28 C 1.39345 * 121.09201 * 359.97438 * 27 26 25 29 29 C 1.36138 * 120.83803 * 359.97438 * 28 27 26 30 30 C 1.40499 * 121.01316 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.46830 * 84.03724 * 1 2 3 32 32 H 1.08997 * 109.47129 * 204.03472 * 1 2 3 33 33 H 1.08997 * 109.47070 * 324.03614 * 1 2 3 34 34 H 1.09000 * 110.36876 * 274.74796 * 7 6 4 35 35 H 1.09006 * 110.36696 * 37.06893 * 7 6 4 36 36 H 0.97003 * 119.99981 * 87.20615 * 10 8 7 37 37 H 0.97008 * 120.00319 * 179.97438 * 14 13 11 38 38 H 1.09003 * 110.72657 * 205.96404 * 19 8 7 39 39 H 1.09000 * 110.71863 * 82.69734 * 19 8 7 40 40 H 1.08999 * 109.47095 * 58.54548 * 22 20 6 41 41 H 1.09004 * 109.47100 * 178.53968 * 22 20 6 42 42 H 1.09000 * 109.46904 * 298.54398 * 22 20 6 43 43 H 1.08002 * 119.22994 * 180.02562 * 23 3 2 44 44 H 1.07994 * 120.09741 * 359.97438 * 26 25 24 45 45 H 1.07996 * 119.45241 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.57985 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.19166 * 179.74387 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2236 1.1916 0.0000 4 6 1.5137 2.4875 0.0006 5 8 0.5759 2.6664 0.7531 6 7 1.9060 3.4711 -0.8331 7 6 2.9596 3.3594 -1.8581 8 6 2.6107 4.4518 -2.9028 9 1 3.4995 4.7629 -3.4519 10 7 1.5640 3.9938 -3.8197 11 6 1.9045 3.3979 -5.0047 12 1 2.9447 3.2651 -5.2631 13 6 0.9127 2.9644 -5.8738 14 7 -0.3550 3.1257 -5.5587 15 14 1.3771 2.1509 -7.4899 16 1 1.4962 0.6842 -7.2896 17 1 0.3278 2.4284 -8.5034 18 1 2.6766 2.6932 -7.9616 19 6 2.0909 5.5953 -1.9922 20 6 1.3583 4.8351 -0.8666 21 1 0.2895 4.8004 -1.0776 22 6 1.6046 5.5278 0.4751 23 6 3.6287 1.1534 0.0005 24 7 4.2825 0.0202 0.0006 25 6 3.6482 -1.1578 0.0006 26 6 4.3695 -2.3639 0.0011 27 6 3.7031 -3.5510 0.0016 28 6 2.3103 -3.5945 0.0022 29 6 1.5764 -2.4479 0.0027 30 6 2.2309 -1.2041 0.0005 31 1 -0.3633 0.1068 -1.0221 32 1 -0.3633 -0.9385 0.4185 33 1 -0.3633 0.8318 0.6035 34 1 3.9385 3.5505 -1.4184 35 1 2.9365 2.3722 -2.3199 36 1 0.6297 4.1127 -3.5875 37 1 -1.0481 2.8231 -6.1662 38 1 1.3994 6.2382 -2.5369 39 1 2.9214 6.1749 -1.5889 40 1 2.6749 5.5522 0.6804 41 1 1.2193 6.5466 0.4342 42 1 1.0953 4.9782 1.2667 43 1 4.1815 2.0812 0.0010 44 1 5.4493 -2.3491 0.0011 45 1 4.2632 -4.4744 0.0025 46 1 1.8067 -4.5499 0.0030 47 1 0.4973 -2.4937 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989218079.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:08 Heat of formation + Delta-G solvation = 15.648008 kcal Electronic energy + Delta-G solvation = -29806.614339 eV Core-core repulsion = 25953.525116 eV Total energy + Delta-G solvation = -3853.089223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22552 -40.99709 -38.92976 -37.89384 -35.90089 -35.55587 -33.40039 -33.02796 -31.41636 -31.26843 -30.16462 -29.01534 -26.81686 -25.84131 -25.47474 -24.92595 -23.30569 -22.13119 -21.48678 -20.51491 -19.35390 -19.02973 -18.80009 -17.94410 -17.49401 -16.85301 -16.38228 -16.04317 -15.78881 -15.58430 -15.41610 -15.34266 -14.99670 -14.95348 -14.87231 -14.37981 -14.23084 -14.08900 -13.81677 -13.50335 -13.25166 -13.16842 -13.13730 -12.90270 -12.78559 -12.74014 -12.66828 -12.43272 -12.26882 -12.21675 -12.09663 -11.65436 -11.48485 -11.23000 -11.18597 -11.01158 -10.49099 -9.86829 -9.69547 -9.24684 -8.99668 -7.95766 -5.24429 -0.79842 -0.40146 0.82059 1.45563 1.45990 1.46798 1.54440 1.83322 2.13175 2.53907 3.00319 3.15051 3.35134 3.36064 3.42294 3.54614 3.71804 3.82121 3.85137 3.92156 3.95557 4.12679 4.17779 4.26047 4.36309 4.38199 4.40473 4.46286 4.51556 4.53213 4.69259 4.74201 4.75157 4.90416 4.92719 4.94289 5.00406 5.08853 5.11691 5.18856 5.21171 5.35243 5.36015 5.41632 5.45290 5.49546 5.53112 5.84054 6.25466 6.48696 6.73267 7.04358 7.32181 8.07123 8.28905 9.27459 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008645 B = 0.004419 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.136442 B = 6334.605305 C = 8198.675447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.023 3.977 3 C -0.208 4.208 4 C 0.580 3.420 5 O -0.570 6.570 6 N -0.591 5.591 7 C 0.077 3.923 8 C 0.157 3.843 9 H 0.090 0.910 10 N -0.724 5.724 11 C -0.237 4.237 12 H 0.082 0.918 13 C -0.072 4.072 14 N -0.969 5.969 15 Si 0.965 3.035 16 H -0.294 1.294 17 H -0.298 1.298 18 H -0.264 1.264 19 C -0.122 4.122 20 C 0.133 3.867 21 H 0.044 0.956 22 C -0.147 4.147 23 C 0.164 3.836 24 N -0.494 5.494 25 C 0.117 3.883 26 C -0.115 4.115 27 C -0.080 4.080 28 C -0.113 4.113 29 C -0.102 4.102 30 C -0.126 4.126 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.178 0.822 44 H 0.149 0.851 45 H 0.169 0.831 46 H 0.165 0.835 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 -7.934 14.058 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.015 3.985 3 C -0.213 4.213 4 C 0.369 3.631 5 O -0.451 6.451 6 N -0.322 5.322 7 C -0.048 4.048 8 C 0.047 3.953 9 H 0.108 0.892 10 N -0.362 5.362 11 C -0.368 4.368 12 H 0.100 0.900 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.795 3.205 16 H -0.222 1.222 17 H -0.225 1.225 18 H -0.189 1.189 19 C -0.160 4.160 20 C 0.031 3.969 21 H 0.062 0.938 22 C -0.205 4.205 23 C -0.009 4.009 24 N -0.202 5.202 25 C -0.004 4.004 26 C -0.134 4.134 27 C -0.100 4.100 28 C -0.131 4.131 29 C -0.120 4.120 30 C -0.128 4.128 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.202 0.798 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.195 0.805 44 H 0.166 0.834 45 H 0.186 0.814 46 H 0.182 0.818 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.752 -8.038 14.319 19.099 hybrid contribution -1.607 -0.224 -1.064 1.940 sum 8.145 -8.262 13.255 17.615 Atomic orbital electron populations 1.21117 0.88991 1.05533 1.03270 1.20792 0.97493 0.91238 0.88983 1.20744 0.96142 0.93737 1.10705 1.17790 0.82604 0.82978 0.79724 1.90663 1.29811 1.81847 1.42790 1.48427 1.38050 1.11449 1.34287 1.23424 0.90570 1.01597 0.89248 1.21698 0.92772 0.91604 0.89260 0.89179 1.42510 1.04446 1.70650 1.18623 1.19658 0.92753 1.29337 0.95099 0.89990 1.25486 0.95257 1.03448 1.02287 1.69827 0.99370 1.54303 1.38464 0.85261 0.77357 0.77954 0.79959 1.22205 1.22480 1.18851 1.23024 1.01374 0.97039 0.94599 1.21606 0.97160 0.80914 0.97259 0.93817 1.22032 1.02695 1.00748 0.95051 1.23184 0.89466 0.97239 0.90977 1.67967 1.39646 0.97869 1.14704 1.19453 0.90151 0.93392 0.97393 1.21077 1.01233 0.89877 1.01210 1.21445 0.94780 0.98603 0.95127 1.21402 0.94336 0.99269 0.98061 1.21387 1.01431 0.90666 0.98533 1.18904 0.94236 0.94580 1.05057 0.91126 0.87790 0.89718 0.88353 0.93242 0.79809 0.94252 0.90399 0.86550 0.90818 0.89679 0.93878 0.80471 0.83371 0.81375 0.81752 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.23 71.24 0.66 -3.37 16 2 C 0.02 0.77 5.98 -19.12 -0.11 0.65 16 3 C -0.21 -7.10 5.18 -20.00 -0.10 -7.21 16 4 C 0.58 21.36 6.76 86.76 0.59 21.95 16 5 O -0.57 -23.43 13.95 -3.91 -0.05 -23.48 16 6 N -0.59 -19.99 3.06 -791.11 -2.42 -22.41 16 7 C 0.08 2.47 5.13 86.93 0.45 2.91 16 8 C 0.16 5.44 3.72 46.46 0.17 5.61 16 9 H 0.09 2.89 8.09 -2.39 -0.02 2.87 16 10 N -0.72 -34.49 5.25 -316.03 -1.66 -36.14 16 11 C -0.24 -12.54 9.96 84.03 0.84 -11.70 16 12 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.97 -59.06 13.06 21.65 0.28 -58.77 16 15 Si 0.96 45.61 29.55 68.60 2.03 47.64 16 16 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 17 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 19 C -0.12 -3.38 6.07 31.78 0.19 -3.19 16 20 C 0.13 4.16 3.43 45.34 0.16 4.31 16 21 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 22 C -0.15 -3.70 9.11 71.98 0.66 -3.05 16 23 C 0.16 5.01 9.52 85.41 0.81 5.83 16 24 N -0.49 -15.26 10.30 -187.68 -1.93 -17.20 16 25 C 0.12 3.40 6.61 40.28 0.27 3.66 16 26 C -0.12 -2.52 9.97 22.34 0.22 -2.30 16 27 C -0.08 -1.26 9.94 22.05 0.22 -1.04 16 28 C -0.11 -1.81 9.96 22.05 0.22 -1.59 16 29 C -0.10 -2.21 9.32 22.34 0.21 -2.00 16 30 C -0.13 -3.65 5.74 -21.28 -0.12 -3.77 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.10 2.36 6.22 -2.39 -0.01 2.34 16 33 H 0.08 2.90 5.73 -2.39 -0.01 2.88 16 34 H 0.10 2.38 7.27 -2.39 -0.02 2.36 16 35 H 0.05 1.90 7.53 -2.38 -0.02 1.88 16 36 H 0.37 19.75 7.86 -92.71 -0.73 19.02 16 37 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.12 2.33 7.85 -2.39 -0.02 2.31 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.28 7.04 -2.39 -0.02 1.26 16 43 H 0.18 4.48 6.66 -2.91 -0.02 4.46 16 44 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 46 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.15 2.64 6.31 -2.91 -0.02 2.62 16 Total: -1.00 -73.20 379.20 2.29 -70.91 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: 0.27 Total: 37.37 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.78 Total: 2.09 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -5.73 Total: -134.53 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -73.20 2.29 -70.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989218079.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.559 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds