Wall clock time and date at job start Tue Mar 31 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36538 * 120.09308 * 2 1 4 4 C 1.40715 * 118.24515 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.29263 * 179.97438 * 4 3 2 6 6 C 1.36126 * 119.64965 * 179.97438 * 5 4 3 7 7 C 1.39440 * 120.92499 * 0.04461 * 6 5 4 8 8 C 1.35997 * 121.08516 * 359.97438 * 7 6 5 9 9 C 1.40831 * 119.73170 * 359.97438 * 8 7 6 10 10 N 1.33249 * 120.97754 * 180.25727 * 9 8 7 11 11 C 1.31904 * 121.29593 * 180.26241 * 10 9 8 12 12 C 1.48269 * 119.24449 * 179.75564 * 11 10 9 13 13 O 1.21498 * 120.00110 * 173.86687 * 12 11 10 14 14 N 1.34779 * 119.99634 * 353.86437 * 12 11 10 15 15 C 1.47017 * 125.65093 * 359.96131 * 14 12 11 16 16 C 1.54318 * 107.27328 * 181.09589 * 15 14 12 17 17 H 1.09009 * 110.87206 * 263.75485 * 16 15 14 18 18 N 1.46501 * 110.72293 * 140.55447 * 16 15 14 19 19 C 1.36942 * 119.99786 * 91.75274 * 18 16 15 20 20 H 1.07995 * 119.99986 * 359.72570 * 19 18 16 21 21 C 1.38811 * 119.99688 * 179.72721 * 19 18 16 22 22 N 1.31620 * 119.99793 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00434 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47470 * 90.00102 * 23 21 19 25 25 H 1.48500 * 109.47631 * 210.00401 * 23 21 19 26 26 H 1.48505 * 109.47137 * 330.00342 * 23 21 19 27 27 C 1.55154 * 102.94325 * 22.18883 * 16 15 14 28 28 C 1.47429 * 125.64630 * 180.02562 * 14 12 11 29 29 H 1.09004 * 110.36510 * 274.67485 * 28 14 12 30 30 C 1.52991 * 110.46145 * 36.94830 * 28 14 12 31 31 H 1.09006 * 109.46706 * 263.08560 * 1 2 3 32 32 H 1.09001 * 109.47107 * 23.07801 * 1 2 3 33 33 H 1.08996 * 109.47711 * 143.08868 * 1 2 3 34 34 H 1.08002 * 120.87663 * 0.02562 * 3 2 1 35 35 H 1.08005 * 120.17232 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.54012 * 180.02562 * 6 5 4 37 37 H 1.07992 * 119.45768 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.12817 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.88263 * 61.67223 * 15 14 12 40 40 H 1.09010 * 109.88245 * 300.51107 * 15 14 12 41 41 H 0.96994 * 120.00298 * 271.47561 * 18 16 15 42 42 H 0.97005 * 120.00092 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.99938 * 82.57598 * 27 16 15 44 44 H 1.08997 * 111.00491 * 206.38497 * 27 16 15 45 45 H 1.09005 * 109.47171 * 175.46631 * 30 28 14 46 46 H 1.09001 * 109.47611 * 295.46887 * 30 28 14 47 47 H 1.09006 * 109.47305 * 55.46915 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3657 2.3118 -0.0011 6 6 5.7244 2.2289 -0.0011 7 6 6.3669 0.9913 -0.0015 8 6 5.6567 -0.1685 -0.0013 9 6 4.2490 -0.1255 -0.0003 10 7 3.5287 -1.2465 0.0050 11 6 2.2100 -1.2136 0.0009 12 6 1.4536 -2.4888 0.0016 13 8 0.2436 -2.4773 0.1103 14 7 2.1085 -3.6607 -0.1184 15 6 3.5634 -3.8189 -0.2575 16 6 3.8494 -5.3296 -0.3903 17 1 4.1183 -5.7602 0.5744 18 7 4.9052 -5.5726 -1.3765 19 6 6.2130 -5.6423 -0.9764 20 1 6.4665 -5.5137 0.0655 21 6 7.2128 -5.8782 -1.9100 22 7 8.4698 -5.9447 -1.5255 23 14 6.7743 -6.1012 -3.7120 24 1 6.7933 -4.7817 -4.3931 25 1 7.7631 -7.0039 -4.3541 26 1 5.4176 -6.6952 -3.8215 27 6 2.4935 -5.8977 -0.8864 28 6 1.4841 -4.9962 -0.1332 29 1 1.3385 -5.3582 0.8846 30 6 0.1486 -4.9540 -0.8783 31 1 -0.3633 -0.1237 1.0203 32 1 -0.3633 0.9454 -0.4028 33 1 -0.3634 -0.8216 -0.6171 34 1 1.6675 2.1257 0.0004 35 1 3.8806 3.2768 -0.0007 36 1 6.3132 3.1344 -0.0011 37 1 7.4461 0.9532 -0.0019 38 1 6.1702 -1.1185 -0.0012 39 1 4.0655 -3.4227 0.6252 40 1 3.9096 -3.2963 -1.1493 41 1 4.6775 -5.6880 -2.3123 42 1 9.1685 -6.1099 -2.1779 43 1 2.3922 -5.7805 -1.9653 44 1 2.3779 -6.9420 -0.5964 45 1 -0.2597 -5.9621 -0.9497 46 1 -0.5500 -4.3166 -0.3363 47 1 0.3039 -4.5532 -1.8801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989222321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:02 Heat of formation + Delta-G solvation = 51.682392 kcal Electronic energy + Delta-G solvation = -29718.652501 eV Core-core repulsion = 25867.125847 eV Total energy + Delta-G solvation = -3851.526655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20730 -39.80243 -37.82876 -36.81824 -34.50317 -34.06375 -31.92866 -31.68253 -31.42395 -30.06934 -28.89128 -27.12117 -25.65859 -25.09989 -23.54864 -22.70085 -22.12514 -21.83072 -20.34754 -19.47371 -18.00286 -17.66091 -17.44272 -16.58101 -16.28372 -15.57238 -15.22044 -14.87256 -14.61444 -14.37498 -14.22342 -13.87856 -13.58923 -13.47414 -13.35641 -13.23792 -13.10573 -12.97136 -12.60139 -12.42479 -12.09161 -12.08342 -11.74155 -11.69166 -11.66302 -11.58073 -11.45624 -11.11736 -10.82613 -10.65413 -10.44667 -10.37717 -10.05649 -9.73498 -9.62896 -9.30510 -8.91517 -8.81806 -8.33812 -8.25161 -7.35257 -5.82054 -3.18842 0.14429 0.59503 1.86766 2.40774 3.06064 3.25799 3.34411 3.37789 3.42855 4.01333 4.05989 4.40616 4.54537 4.55795 4.62770 4.70414 4.90281 4.97301 5.01589 5.09145 5.13672 5.19746 5.28975 5.40150 5.47733 5.53899 5.63684 5.67071 5.74448 5.74990 5.80780 5.83765 5.92538 5.97083 5.97992 6.09311 6.18916 6.27693 6.28641 6.33533 6.37214 6.42846 6.47228 6.63681 6.66842 6.73798 6.88240 7.65124 7.76106 7.93664 8.29884 8.36770 9.13836 9.86344 10.05014 11.35780 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.004661 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.004541 B = 6005.380761 C = 8671.843586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.077 4.077 4 C -0.081 4.081 5 C -0.112 4.112 6 C -0.103 4.103 7 C -0.112 4.112 8 C -0.072 4.072 9 C 0.115 3.885 10 N -0.419 5.419 11 C 0.113 3.887 12 C 0.579 3.421 13 O -0.538 6.538 14 N -0.587 5.587 15 C 0.092 3.908 16 C 0.172 3.828 17 H 0.075 0.925 18 N -0.737 5.737 19 C -0.247 4.247 20 H 0.093 0.907 21 C 0.010 3.990 22 N -0.931 5.931 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.142 4.142 28 C 0.135 3.865 29 H 0.077 0.923 30 C -0.160 4.160 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.280 14.897 3.510 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.103 4.103 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.121 4.121 7 C -0.132 4.132 8 C -0.091 4.091 9 C -0.009 4.009 10 N -0.129 5.129 11 C -0.041 4.041 12 C 0.367 3.633 13 O -0.416 6.416 14 N -0.319 5.319 15 C -0.033 4.033 16 C 0.060 3.940 17 H 0.093 0.907 18 N -0.378 5.378 19 C -0.377 4.377 20 H 0.110 0.890 21 C -0.187 4.187 22 N -0.578 5.578 23 Si 0.711 3.289 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.181 4.181 28 C 0.032 3.968 29 H 0.095 0.905 30 C -0.218 4.218 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.164 0.836 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.165 14.129 3.704 19.664 hybrid contribution -0.250 0.771 -1.381 1.601 sum -13.415 14.900 2.323 20.183 Atomic orbital electron populations 1.21038 0.88980 1.03046 1.03875 1.20502 0.98385 0.92070 0.97975 1.21285 0.92439 0.98261 0.98336 1.18970 0.94154 0.94605 1.00544 1.20927 0.94098 0.96908 1.01126 1.21005 0.94611 0.98090 0.98355 1.20963 1.00776 0.91891 0.99583 1.21097 0.91104 1.00115 0.96755 1.18958 0.94366 0.87637 0.99905 1.68253 1.06302 1.29931 1.08461 1.21195 0.89752 0.93624 0.99541 1.17537 0.86081 0.82070 0.77630 1.90645 1.12864 1.86067 1.52070 1.48521 1.09805 1.04824 1.68760 1.23277 0.77284 0.99935 1.02827 1.21272 0.87175 0.91286 0.94260 0.90680 1.42706 1.03447 1.86559 1.05074 1.19084 0.80986 1.41922 0.95700 0.88962 1.24641 0.95092 1.01576 0.97345 1.69697 0.98785 1.55871 1.33428 0.86609 0.77438 0.77875 0.86957 1.21091 1.21685 1.20279 1.23219 0.95330 0.99061 1.00476 1.21919 0.93538 0.81807 0.99506 0.90489 1.22133 0.96893 1.02046 1.00702 0.90622 0.92570 0.88219 0.84068 0.85342 0.85527 0.84949 0.83617 0.90823 0.90575 0.80354 0.93005 0.90847 0.89886 0.92219 0.89932 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.67 36.00 0.31 -0.96 16 2 C -0.09 -1.14 5.89 -104.48 -0.62 -1.76 16 3 C -0.08 -0.88 9.50 -39.26 -0.37 -1.26 16 4 C -0.08 -1.02 5.75 -106.71 -0.61 -1.63 16 5 C -0.11 -1.12 9.77 -39.52 -0.39 -1.50 16 6 C -0.10 -0.98 9.95 -39.89 -0.40 -1.38 16 7 C -0.11 -1.25 9.94 -39.94 -0.40 -1.65 16 8 C -0.07 -1.01 9.99 -39.41 -0.39 -1.41 16 9 C 0.11 1.73 6.61 -84.85 -0.56 1.17 16 10 N -0.42 -6.93 6.81 -7.54 -0.05 -6.99 16 11 C 0.11 1.78 6.71 -82.96 -0.56 1.22 16 12 C 0.58 9.49 7.56 -12.13 -0.09 9.40 16 13 O -0.54 -8.84 10.95 5.37 0.06 -8.78 16 14 N -0.59 -9.55 3.24 -164.01 -0.53 -10.08 16 15 C 0.09 1.65 5.14 -3.07 -0.02 1.63 16 16 C 0.17 3.17 3.62 -66.10 -0.24 2.93 16 17 H 0.08 1.41 8.09 -51.92 -0.42 0.99 16 18 N -0.74 -16.67 4.95 -51.65 -0.26 -16.92 16 19 C -0.25 -6.66 10.44 -15.06 -0.16 -6.82 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 21 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 22 N -0.93 -28.35 13.97 55.49 0.78 -27.57 16 23 Si 0.88 21.61 27.73 -169.99 -4.71 16.90 16 24 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 27 C -0.14 -2.15 6.13 -24.60 -0.15 -2.30 16 28 C 0.14 1.94 3.76 -66.43 -0.25 1.69 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 C -0.16 -2.11 8.60 37.15 0.32 -1.79 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.49 8.04 -51.93 -0.42 0.08 16 33 H 0.10 1.30 5.81 -51.93 -0.30 1.00 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.07 1.37 7.38 -51.93 -0.38 0.99 16 40 H 0.08 1.52 7.46 -51.92 -0.39 1.13 16 41 H 0.36 8.19 5.62 -40.82 -0.23 7.96 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 1.17 6.10 -51.93 -0.32 0.85 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -31.41 375.70 -10.41 -41.82 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -6.69 Total: 10.19 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.66 Total: -4.23 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -0.06 Total: -61.56 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.41 -10.41 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.500 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds