Wall clock time and date at job start Tue Mar 31 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36538 * 120.09308 * 2 1 4 4 C 1.40715 * 118.24515 * 180.02562 * 3 2 1 5 5 C 1.40427 * 121.29263 * 179.97438 * 4 3 2 6 6 C 1.36126 * 119.64965 * 179.97438 * 5 4 3 7 7 C 1.39440 * 120.92499 * 0.04461 * 6 5 4 8 8 C 1.35997 * 121.08516 * 359.97438 * 7 6 5 9 9 C 1.40831 * 119.73170 * 359.97438 * 8 7 6 10 10 N 1.33249 * 120.97754 * 180.25727 * 9 8 7 11 11 C 1.31904 * 121.29593 * 180.26241 * 10 9 8 12 12 C 1.48269 * 119.24449 * 179.75564 * 11 10 9 13 13 O 1.21498 * 120.00110 * 173.86687 * 12 11 10 14 14 N 1.34779 * 119.99634 * 353.86437 * 12 11 10 15 15 C 1.47017 * 125.65093 * 359.96131 * 14 12 11 16 16 C 1.54318 * 107.27328 * 181.09589 * 15 14 12 17 17 H 1.09009 * 110.87206 * 263.75485 * 16 15 14 18 18 N 1.46501 * 110.72293 * 140.55447 * 16 15 14 19 19 C 1.36942 * 119.99786 * 91.75274 * 18 16 15 20 20 H 1.07995 * 119.99986 * 359.72570 * 19 18 16 21 21 C 1.38811 * 119.99688 * 179.72721 * 19 18 16 22 22 N 1.31620 * 119.99793 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 120.00434 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47470 * 90.00102 * 23 21 19 25 25 H 1.48500 * 109.47631 * 210.00401 * 23 21 19 26 26 H 1.48505 * 109.47137 * 330.00342 * 23 21 19 27 27 C 1.55154 * 102.94325 * 22.18883 * 16 15 14 28 28 C 1.47429 * 125.64630 * 180.02562 * 14 12 11 29 29 H 1.09004 * 110.36510 * 274.67485 * 28 14 12 30 30 C 1.52991 * 110.46145 * 36.94830 * 28 14 12 31 31 H 1.09006 * 109.46706 * 263.08560 * 1 2 3 32 32 H 1.09001 * 109.47107 * 23.07801 * 1 2 3 33 33 H 1.08996 * 109.47711 * 143.08868 * 1 2 3 34 34 H 1.08002 * 120.87663 * 0.02562 * 3 2 1 35 35 H 1.08005 * 120.17232 * 0.02562 * 5 4 3 36 36 H 1.08004 * 119.54012 * 180.02562 * 6 5 4 37 37 H 1.07992 * 119.45768 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.12817 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.88263 * 61.67223 * 15 14 12 40 40 H 1.09010 * 109.88245 * 300.51107 * 15 14 12 41 41 H 0.96994 * 120.00298 * 271.47561 * 18 16 15 42 42 H 0.97005 * 120.00092 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.99938 * 82.57598 * 27 16 15 44 44 H 1.08997 * 111.00491 * 206.38497 * 27 16 15 45 45 H 1.09005 * 109.47171 * 175.46631 * 30 28 14 46 46 H 1.09001 * 109.47611 * 295.46887 * 30 28 14 47 47 H 1.09006 * 109.47305 * 55.46915 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5980 1.1360 -0.0006 5 6 4.3657 2.3118 -0.0011 6 6 5.7244 2.2289 -0.0011 7 6 6.3669 0.9913 -0.0015 8 6 5.6567 -0.1685 -0.0013 9 6 4.2490 -0.1255 -0.0003 10 7 3.5287 -1.2465 0.0050 11 6 2.2100 -1.2136 0.0009 12 6 1.4536 -2.4888 0.0016 13 8 0.2436 -2.4773 0.1103 14 7 2.1085 -3.6607 -0.1184 15 6 3.5634 -3.8189 -0.2575 16 6 3.8494 -5.3296 -0.3903 17 1 4.1183 -5.7602 0.5744 18 7 4.9052 -5.5726 -1.3765 19 6 6.2130 -5.6423 -0.9764 20 1 6.4665 -5.5137 0.0655 21 6 7.2128 -5.8782 -1.9100 22 7 8.4698 -5.9447 -1.5255 23 14 6.7743 -6.1012 -3.7120 24 1 6.7933 -4.7817 -4.3931 25 1 7.7631 -7.0039 -4.3541 26 1 5.4176 -6.6952 -3.8215 27 6 2.4935 -5.8977 -0.8864 28 6 1.4841 -4.9962 -0.1332 29 1 1.3385 -5.3582 0.8846 30 6 0.1486 -4.9540 -0.8783 31 1 -0.3633 -0.1237 1.0203 32 1 -0.3633 0.9454 -0.4028 33 1 -0.3634 -0.8216 -0.6171 34 1 1.6675 2.1257 0.0004 35 1 3.8806 3.2768 -0.0007 36 1 6.3132 3.1344 -0.0011 37 1 7.4461 0.9532 -0.0019 38 1 6.1702 -1.1185 -0.0012 39 1 4.0655 -3.4227 0.6252 40 1 3.9096 -3.2963 -1.1493 41 1 4.6775 -5.6880 -2.3123 42 1 9.1685 -6.1099 -2.1779 43 1 2.3922 -5.7805 -1.9653 44 1 2.3779 -6.9420 -0.5964 45 1 -0.2597 -5.9621 -0.9497 46 1 -0.5500 -4.3166 -0.3363 47 1 0.3039 -4.5532 -1.8801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989222321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:02 Heat of formation + Delta-G solvation = 33.469671 kcal Electronic energy + Delta-G solvation = -29719.442264 eV Core-core repulsion = 25867.125847 eV Total energy + Delta-G solvation = -3852.316418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.25579 -41.00125 -39.08578 -37.89025 -36.16441 -35.19545 -33.53576 -33.04398 -32.53282 -31.08131 -30.52379 -28.03935 -26.85676 -26.31045 -25.39874 -23.69773 -23.09277 -23.04224 -21.92421 -20.66634 -19.70820 -18.96254 -18.57994 -17.65178 -17.51944 -16.88217 -16.53719 -16.23814 -15.91617 -15.55463 -15.33357 -15.15648 -14.99771 -14.79773 -14.61453 -14.45062 -14.21843 -14.01931 -13.91848 -13.67961 -13.48792 -13.35168 -13.00416 -12.99199 -12.79101 -12.65006 -12.58930 -12.47583 -12.29555 -12.23697 -11.94875 -11.83880 -11.54524 -11.39033 -11.07974 -10.85155 -10.30575 -9.86533 -9.56508 -9.34548 -9.22704 -8.02444 -5.37105 -0.83988 -0.36378 0.91009 1.36352 1.36997 1.39383 1.46290 1.84377 2.17375 2.47246 2.89317 3.05104 3.27108 3.37448 3.55048 3.63102 3.72380 3.75056 3.81538 3.88444 4.07868 4.12081 4.19564 4.30410 4.34319 4.38472 4.42555 4.46610 4.61927 4.74293 4.75732 4.82985 4.86952 4.91673 4.97769 5.03383 5.08443 5.12578 5.16644 5.23539 5.28210 5.33148 5.37552 5.45647 5.53729 5.56221 5.76577 5.85697 6.20827 6.41084 6.62270 7.04299 7.07024 7.79473 7.99002 9.18623 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.004661 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3206.004541 B = 6005.380761 C = 8671.843586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.059 4.059 4 C -0.093 4.093 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.099 4.099 8 C -0.114 4.114 9 C 0.088 3.912 10 N -0.455 5.455 11 C 0.086 3.914 12 C 0.574 3.426 13 O -0.539 6.539 14 N -0.593 5.593 15 C 0.116 3.884 16 C 0.163 3.837 17 H 0.070 0.930 18 N -0.738 5.738 19 C -0.230 4.230 20 H 0.060 0.940 21 C -0.055 4.055 22 N -0.980 5.980 23 Si 0.947 3.053 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.250 1.250 27 C -0.127 4.127 28 C 0.133 3.867 29 H 0.089 0.911 30 C -0.149 4.149 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.186 0.814 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.149 0.851 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.367 0.633 42 H 0.258 0.742 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.604 17.447 2.692 23.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.084 4.084 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.133 4.133 9 C -0.035 4.035 10 N -0.167 5.167 11 C -0.067 4.067 12 C 0.363 3.637 13 O -0.418 6.418 14 N -0.325 5.325 15 C -0.010 4.010 16 C 0.053 3.947 17 H 0.088 0.912 18 N -0.380 5.380 19 C -0.361 4.361 20 H 0.078 0.922 21 C -0.247 4.247 22 N -0.630 5.630 23 Si 0.775 3.225 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.174 1.174 27 C -0.166 4.166 28 C 0.031 3.969 29 H 0.107 0.893 30 C -0.207 4.207 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.204 0.796 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.167 0.833 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.200 0.800 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.124 0.876 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.570 16.676 2.902 22.998 hybrid contribution 0.512 0.130 -1.000 1.131 sum -15.058 16.805 1.902 22.645 Atomic orbital electron populations 1.20956 0.87645 1.03894 1.03532 1.20735 0.99327 0.91779 0.98717 1.21753 0.91881 0.99256 0.95557 1.19287 0.95198 0.94456 1.00579 1.21415 0.94192 0.97441 0.98707 1.21438 0.95054 0.98404 0.96946 1.21285 1.01674 0.91817 0.97104 1.21015 0.91408 1.00195 1.00667 1.19247 0.94658 0.88673 1.00934 1.68130 1.07030 1.31538 1.09955 1.21329 0.89864 0.94372 1.01086 1.17808 0.86234 0.82417 0.77272 1.90637 1.12789 1.86278 1.52131 1.48543 1.08844 1.05826 1.69271 1.22728 0.78613 0.98804 1.00863 1.21440 0.88014 0.91805 0.93413 0.91191 1.42638 1.02672 1.86703 1.05987 1.19015 0.83007 1.39757 0.94273 0.92177 1.25380 0.94893 1.02438 1.01966 1.69869 1.00020 1.58207 1.34883 0.85533 0.78280 0.77604 0.81118 1.21189 1.22117 1.17420 1.23140 0.92612 1.00303 1.00516 1.22094 0.93880 0.80633 1.00332 0.89305 1.22035 0.95663 1.03401 0.99573 0.90738 0.89390 0.90337 0.79635 0.81130 0.81542 0.83291 0.86719 0.92641 0.93005 0.79962 0.93344 0.90754 0.87586 0.89527 0.90913 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 8.67 71.24 0.62 -1.56 16 2 C -0.10 -2.61 5.89 -19.77 -0.12 -2.73 16 3 C -0.06 -1.19 9.50 22.48 0.21 -0.97 16 4 C -0.09 -2.20 5.75 -21.22 -0.12 -2.32 16 5 C -0.10 -1.59 9.77 22.31 0.22 -1.38 16 6 C -0.10 -1.59 9.95 22.07 0.22 -1.37 16 7 C -0.10 -2.16 9.94 22.04 0.22 -1.94 16 8 C -0.11 -3.45 9.99 22.38 0.22 -3.23 16 9 C 0.09 2.79 6.61 40.48 0.27 3.05 16 10 N -0.46 -16.17 6.81 -177.76 -1.21 -17.38 16 11 C 0.09 2.82 6.71 42.29 0.28 3.10 16 12 C 0.57 19.37 7.56 86.91 0.66 20.03 16 13 O -0.54 -17.83 10.95 -3.71 -0.04 -17.87 16 14 N -0.59 -19.82 3.24 -791.11 -2.57 -22.39 16 15 C 0.12 4.41 5.14 86.73 0.45 4.85 16 16 C 0.16 6.18 3.62 46.18 0.17 6.35 16 17 H 0.07 2.72 8.09 -2.38 -0.02 2.70 16 18 N -0.74 -34.01 4.95 -317.33 -1.57 -35.58 16 19 C -0.23 -12.88 10.44 84.03 0.88 -12.00 16 20 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 21 C -0.05 -3.20 5.50 84.86 0.47 -2.73 16 22 N -0.98 -62.12 13.97 21.65 0.30 -61.82 16 23 Si 0.95 45.32 27.73 68.60 1.90 47.22 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 27 C -0.13 -3.70 6.13 31.98 0.20 -3.50 16 28 C 0.13 3.70 3.76 45.45 0.17 3.88 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 C -0.15 -3.69 8.60 71.98 0.62 -3.07 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.09 1.25 8.04 -2.39 -0.02 1.23 16 33 H 0.08 2.00 5.81 -2.39 -0.01 1.99 16 34 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 37 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.11 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.06 2.28 7.38 -2.38 -0.02 2.26 16 40 H 0.05 2.22 7.46 -2.38 -0.02 2.20 16 41 H 0.37 16.35 5.62 -92.71 -0.52 15.83 16 42 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 43 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 44 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.07 1.98 6.10 -2.39 -0.01 1.96 16 47 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -73.51 375.70 2.85 -70.66 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.41 Total: 32.70 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.62 Total: 4.45 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.05 Total: -137.16 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -73.51 2.85 -70.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989222321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.127 kcal (2) G-P(sol) polarization free energy of solvation -73.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds