Wall clock time and date at job start Tue Mar 31 2020 22:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47006 * 269.99638 * 3 2 1 5 5 H 1.48497 * 109.47224 * 30.00217 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00044 * 3 2 1 7 7 C 1.38813 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99299 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10378 * 359.97438 * 9 7 2 11 11 C 1.56236 * 106.50918 * 171.34021 * 10 9 7 12 12 C 1.52136 * 100.80786 * 336.55593 * 11 10 9 13 13 N 1.46503 * 111.48732 * 285.89106 * 12 11 10 14 14 C 1.34779 * 120.00565 * 281.20581 * 13 12 11 15 15 O 1.21779 * 119.99246 * 359.97438 * 14 13 12 16 16 C 1.46201 * 120.00188 * 180.02562 * 14 13 12 17 17 C 1.41742 * 126.80150 * 0.02562 * 16 14 13 18 18 C 1.34512 * 107.77646 * 179.97438 * 17 16 14 19 19 N 1.36947 * 109.60666 * 0.02562 * 18 17 16 20 20 C 1.36706 * 131.34856 * 180.02562 * 19 18 17 21 21 C 1.35007 * 120.75086 * 179.97438 * 20 19 18 22 22 C 1.40311 * 120.38318 * 359.97438 * 21 20 19 23 23 C 1.36342 * 119.45503 * 359.97438 * 22 21 20 24 24 C 1.36945 * 108.74104 * 359.74419 * 19 18 17 25 25 C 1.51222 * 122.11537 * 151.20980 * 12 11 10 26 26 C 1.55697 * 104.70598 * 218.66653 * 25 12 11 27 27 C 1.56562 * 105.79741 * 7.32208 * 26 25 12 28 28 C 1.42702 * 127.10273 * 180.02562 * 9 7 2 29 29 H 1.09002 * 108.17856 * 103.46380 * 28 9 7 30 30 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.04764 * 290.60448 * 10 9 7 32 32 H 1.09000 * 110.04495 * 52.02606 * 10 9 7 33 33 H 1.08995 * 111.14752 * 218.66801 * 11 10 9 34 34 H 1.08994 * 111.14752 * 94.43816 * 11 10 9 35 35 H 0.97009 * 119.99763 * 101.20326 * 13 12 11 36 36 H 1.08001 * 126.10948 * 359.95711 * 17 16 14 37 37 H 1.08007 * 125.20070 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.62645 * 359.96937 * 20 19 18 39 39 H 1.08005 * 119.80729 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.27311 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.34058 * 179.97438 * 23 22 21 42 42 H 1.09002 * 110.40964 * 337.50835 * 25 12 11 43 43 H 1.09002 * 110.41125 * 99.82731 * 25 12 11 44 44 H 1.09009 * 110.15308 * 126.42747 * 26 25 12 45 45 H 1.09005 * 110.15798 * 248.18533 * 26 25 12 46 46 H 1.09003 * 110.92573 * 266.07150 * 27 26 25 47 47 H 1.08998 * 111.01151 * 142.35588 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4134 -4.0971 -0.2250 12 6 0.8805 -4.5063 -0.9126 13 7 0.9234 -4.0357 -2.2993 14 6 0.2465 -4.6993 -3.2575 15 8 -0.4004 -5.6903 -2.9705 16 6 0.2897 -4.2299 -4.6414 17 6 0.9928 -3.1020 -5.1339 18 6 0.7690 -3.0245 -6.4580 19 7 -0.0488 -4.0520 -6.8467 20 6 -0.5507 -4.3928 -8.0718 21 6 -1.3518 -5.4702 -8.2141 22 6 -1.6826 -6.2604 -7.1029 23 6 -1.1878 -5.9320 -5.8756 24 6 -0.3536 -4.8113 -5.7486 25 6 1.4463 -5.9037 -0.7951 26 6 2.9860 -5.6991 -0.6878 27 6 3.2027 -4.1538 -0.5603 28 6 1.8807 -3.7026 0.0016 29 1 1.7901 -4.1093 1.0088 30 1 -0.4850 0.8401 0.0004 31 1 -0.5713 -2.2613 0.9590 32 1 -0.6046 -1.9937 -0.8067 33 1 -1.2728 -4.2587 -0.8757 34 1 -0.5369 -4.6196 0.7235 35 1 1.4389 -3.2464 -2.5280 36 1 1.5996 -2.4255 -4.5503 37 1 1.1725 -2.2677 -7.1145 38 1 -0.3037 -3.7934 -8.9355 39 1 -1.7402 -5.7253 -9.1891 40 1 -2.3238 -7.1215 -7.2187 41 1 -1.4335 -6.5299 -5.0105 42 1 1.0647 -6.3943 0.1004 43 1 1.2014 -6.4888 -1.6816 44 1 3.3718 -6.2078 0.1957 45 1 3.4784 -6.0763 -1.5842 46 1 3.3860 -3.7045 -1.5364 47 1 4.0163 -3.9288 0.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991776521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:27 Heat of formation + Delta-G solvation = 84.290429 kcal Electronic energy + Delta-G solvation = -30294.693695 eV Core-core repulsion = 26444.581031 eV Total energy + Delta-G solvation = -3850.112664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24932 -40.23042 -37.77591 -36.55114 -34.33394 -33.00203 -32.78843 -31.63025 -30.13159 -29.65603 -27.92914 -26.84933 -25.68119 -24.03927 -23.72901 -23.16479 -21.42872 -20.43811 -20.14205 -19.47206 -18.51170 -17.79436 -16.58397 -16.42916 -16.00465 -15.60302 -15.51608 -15.49289 -14.67073 -14.54889 -14.39372 -14.07731 -13.86698 -13.76589 -13.23104 -12.92877 -12.75398 -12.50507 -12.26813 -11.88713 -11.75733 -11.68874 -11.43421 -11.33791 -11.26984 -10.97578 -10.87264 -10.69445 -10.42682 -10.35242 -10.22247 -9.96999 -9.86470 -9.63630 -9.41683 -9.00426 -8.69148 -8.64292 -8.28202 -7.33695 -6.82854 -5.72258 -3.06773 0.69472 1.19342 2.50869 2.59701 3.31875 3.38267 3.44396 3.46159 3.91734 4.08574 4.37685 4.47768 4.69635 4.72337 4.73281 4.90679 5.05288 5.21056 5.31078 5.34698 5.50788 5.52619 5.65939 5.68578 5.78048 5.81593 5.86990 5.92877 6.05046 6.08752 6.13522 6.25205 6.26641 6.29106 6.34933 6.44724 6.47252 6.56787 6.60743 6.72968 6.75497 6.84953 6.90393 7.01496 7.18205 7.39384 7.56578 7.64792 7.81590 8.22842 8.32681 8.96042 9.15742 9.82385 10.52291 11.39766 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003910 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.359182 B = 7158.523900 C = 8445.877527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.584 5.584 10 C 0.178 3.822 11 C -0.139 4.139 12 C 0.137 3.863 13 N -0.685 5.685 14 C 0.590 3.410 15 O -0.564 6.564 16 C -0.228 4.228 17 C -0.100 4.100 18 C -0.067 4.067 19 N -0.340 5.340 20 C 0.045 3.955 21 C -0.145 4.145 22 C -0.128 4.128 23 C -0.073 4.073 24 C 0.104 3.896 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.113 4.113 28 C 0.157 3.843 29 H 0.021 0.979 30 H 0.252 0.748 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.403 0.597 36 H 0.156 0.844 37 H 0.172 0.828 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -10.965 -14.852 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.308 5.308 10 C 0.055 3.945 11 C -0.178 4.178 12 C 0.049 3.951 13 N -0.334 5.334 14 C 0.379 3.621 15 O -0.446 6.446 16 C -0.237 4.237 17 C -0.122 4.122 18 C -0.192 4.192 19 N -0.004 5.004 20 C -0.076 4.076 21 C -0.166 4.166 22 C -0.149 4.149 23 C -0.091 4.091 24 C -0.005 4.005 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.152 4.152 28 C 0.046 3.954 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.178 0.822 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.001 -11.294 -14.829 18.640 hybrid contribution 0.648 1.551 -0.194 1.692 sum 0.649 -9.743 -15.023 17.918 Atomic orbital electron populations 1.69928 1.04874 1.25065 1.56545 1.24783 0.95588 0.97555 1.02145 0.86182 0.78649 0.83778 0.77507 1.21657 1.21780 1.20753 1.19011 0.90259 0.82291 1.44265 0.90340 1.43673 1.01750 0.99247 1.86114 1.22008 0.83147 0.88686 1.00693 1.22787 0.96493 0.99496 0.99031 1.21441 0.98048 0.94048 0.81602 1.45449 1.50462 1.30706 1.06802 1.16915 0.78828 0.82831 0.83510 1.90700 1.43686 1.27033 1.83189 1.19545 1.09734 1.01522 0.92939 1.21175 1.00085 0.97446 0.93499 1.21663 1.04328 0.96374 0.96856 1.41518 1.32123 1.20196 1.06604 1.21637 0.99342 0.99557 0.87048 1.20731 0.99999 0.95422 1.00414 1.21079 1.01181 1.00602 0.92052 1.20902 0.94598 0.94545 0.99105 1.18634 1.01098 0.94660 0.86082 1.21897 0.94562 0.96338 1.02520 1.22859 0.96003 0.95824 1.00742 1.21879 0.97735 0.94585 1.01001 1.20850 0.91843 0.87370 0.95310 0.96136 0.93734 0.94795 0.91643 0.91697 0.91745 0.76077 0.82672 0.81108 0.82196 0.83781 0.84713 0.82692 0.91446 0.90451 0.92139 0.92378 0.91664 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.55 55.49 0.59 -25.73 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.09 10.29 -15.06 -0.15 -6.24 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.58 -14.24 3.06 -162.62 -0.50 -14.73 16 10 C 0.18 4.34 5.35 -0.75 0.00 4.33 16 11 C -0.14 -2.86 6.32 -25.44 -0.16 -3.02 16 12 C 0.14 2.61 0.43 -130.68 -0.06 2.55 16 13 N -0.68 -12.89 4.33 -47.97 -0.21 -13.10 16 14 C 0.59 11.15 7.21 -13.06 -0.09 11.06 16 15 O -0.56 -11.57 13.86 5.12 0.07 -11.50 16 16 C -0.23 -3.84 6.20 -104.46 -0.65 -4.49 16 17 C -0.10 -1.47 10.27 -39.56 -0.41 -1.88 16 18 C -0.07 -0.83 11.53 -16.58 -0.19 -1.02 16 19 N -0.34 -4.33 2.92 -60.81 -0.18 -4.50 16 20 C 0.05 0.42 10.89 -16.53 -0.18 0.24 16 21 C -0.15 -1.22 9.98 -39.95 -0.40 -1.62 16 22 C -0.13 -1.29 10.09 -39.49 -0.40 -1.69 16 23 C -0.07 -0.98 9.72 -39.50 -0.38 -1.36 16 24 C 0.10 1.59 6.70 -83.91 -0.56 1.02 16 25 C -0.11 -1.93 5.96 -26.19 -0.16 -2.09 16 26 C -0.12 -1.75 6.96 -23.38 -0.16 -1.91 16 27 C -0.11 -1.96 6.47 -26.03 -0.17 -2.13 16 28 C 0.16 3.20 2.62 -68.67 -0.18 3.02 16 29 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.90 7.98 -51.93 -0.41 0.48 16 32 H 0.07 1.77 7.04 -51.93 -0.37 1.41 16 33 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 7.72 6.93 -40.82 -0.28 7.44 16 36 H 0.16 2.14 7.53 -52.49 -0.40 1.75 16 37 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.16 2.20 7.07 -52.49 -0.37 1.83 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.39 6.20 -51.93 -0.32 1.07 16 44 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.13 7.51 -51.93 -0.39 0.74 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -31.94 373.27 -10.74 -42.69 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.72 Total: 10.20 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -4.40 Total: -5.43 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.30 Total: -58.06 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.94 -10.74 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991776521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.977 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds