Wall clock time and date at job start Tue Mar 31 2020 22:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99771 * 2 1 4 4 H 1.48501 * 109.47006 * 269.99638 * 3 2 1 5 5 H 1.48497 * 109.47224 * 30.00217 * 3 2 1 6 6 H 1.48501 * 109.46941 * 150.00044 * 3 2 1 7 7 C 1.38813 * 119.99589 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99299 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.49296 * 127.10378 * 359.97438 * 9 7 2 11 11 C 1.56236 * 106.50918 * 171.34021 * 10 9 7 12 12 C 1.52136 * 100.80786 * 336.55593 * 11 10 9 13 13 N 1.46503 * 111.48732 * 285.89106 * 12 11 10 14 14 C 1.34779 * 120.00565 * 281.20581 * 13 12 11 15 15 O 1.21779 * 119.99246 * 359.97438 * 14 13 12 16 16 C 1.46201 * 120.00188 * 180.02562 * 14 13 12 17 17 C 1.41742 * 126.80150 * 0.02562 * 16 14 13 18 18 C 1.34512 * 107.77646 * 179.97438 * 17 16 14 19 19 N 1.36947 * 109.60666 * 0.02562 * 18 17 16 20 20 C 1.36706 * 131.34856 * 180.02562 * 19 18 17 21 21 C 1.35007 * 120.75086 * 179.97438 * 20 19 18 22 22 C 1.40311 * 120.38318 * 359.97438 * 21 20 19 23 23 C 1.36342 * 119.45503 * 359.97438 * 22 21 20 24 24 C 1.36945 * 108.74104 * 359.74419 * 19 18 17 25 25 C 1.51222 * 122.11537 * 151.20980 * 12 11 10 26 26 C 1.55697 * 104.70598 * 218.66653 * 25 12 11 27 27 C 1.56562 * 105.79741 * 7.32208 * 26 25 12 28 28 C 1.42702 * 127.10273 * 180.02562 * 9 7 2 29 29 H 1.09002 * 108.17856 * 103.46380 * 28 9 7 30 30 H 0.97004 * 120.00057 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.04764 * 290.60448 * 10 9 7 32 32 H 1.09000 * 110.04495 * 52.02606 * 10 9 7 33 33 H 1.08995 * 111.14752 * 218.66801 * 11 10 9 34 34 H 1.08994 * 111.14752 * 94.43816 * 11 10 9 35 35 H 0.97009 * 119.99763 * 101.20326 * 13 12 11 36 36 H 1.08001 * 126.10948 * 359.95711 * 17 16 14 37 37 H 1.08007 * 125.20070 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.62645 * 359.96937 * 20 19 18 39 39 H 1.08005 * 119.80729 * 179.97438 * 21 20 19 40 40 H 1.07994 * 120.27311 * 179.97438 * 22 21 20 41 41 H 1.07995 * 120.34058 * 179.97438 * 23 22 21 42 42 H 1.09002 * 110.40964 * 337.50835 * 25 12 11 43 43 H 1.09002 * 110.41125 * 99.82731 * 25 12 11 44 44 H 1.09009 * 110.15308 * 126.42747 * 26 25 12 45 45 H 1.09005 * 110.15798 * 248.18533 * 26 25 12 46 46 H 1.09003 * 110.92573 * 266.07150 * 27 26 25 47 47 H 1.08998 * 111.01151 * 142.35588 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4134 -4.0971 -0.2250 12 6 0.8805 -4.5063 -0.9126 13 7 0.9234 -4.0357 -2.2993 14 6 0.2465 -4.6993 -3.2575 15 8 -0.4004 -5.6903 -2.9705 16 6 0.2897 -4.2299 -4.6414 17 6 0.9928 -3.1020 -5.1339 18 6 0.7690 -3.0245 -6.4580 19 7 -0.0488 -4.0520 -6.8467 20 6 -0.5507 -4.3928 -8.0718 21 6 -1.3518 -5.4702 -8.2141 22 6 -1.6826 -6.2604 -7.1029 23 6 -1.1878 -5.9320 -5.8756 24 6 -0.3536 -4.8113 -5.7486 25 6 1.4463 -5.9037 -0.7951 26 6 2.9860 -5.6991 -0.6878 27 6 3.2027 -4.1538 -0.5603 28 6 1.8807 -3.7026 0.0016 29 1 1.7901 -4.1093 1.0088 30 1 -0.4850 0.8401 0.0004 31 1 -0.5713 -2.2613 0.9590 32 1 -0.6046 -1.9937 -0.8067 33 1 -1.2728 -4.2587 -0.8757 34 1 -0.5369 -4.6196 0.7235 35 1 1.4389 -3.2464 -2.5280 36 1 1.5996 -2.4255 -4.5503 37 1 1.1725 -2.2677 -7.1145 38 1 -0.3037 -3.7934 -8.9355 39 1 -1.7402 -5.7253 -9.1891 40 1 -2.3238 -7.1215 -7.2187 41 1 -1.4335 -6.5299 -5.0105 42 1 1.0647 -6.3943 0.1004 43 1 1.2014 -6.4888 -1.6816 44 1 3.3718 -6.2078 0.1957 45 1 3.4784 -6.0763 -1.5842 46 1 3.3860 -3.7045 -1.5364 47 1 4.0163 -3.9288 0.1293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991776521.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:26 Heat of formation + Delta-G solvation = 66.717202 kcal Electronic energy + Delta-G solvation = -30295.455727 eV Core-core repulsion = 26444.581031 eV Total energy + Delta-G solvation = -3850.874696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.21818 -41.78655 -39.23446 -37.47140 -36.10898 -34.35390 -33.92824 -33.46888 -31.64408 -30.81682 -28.99058 -28.50745 -27.24052 -25.94018 -24.65844 -24.33212 -22.39073 -22.16694 -21.46959 -21.08715 -19.97410 -18.89074 -18.32644 -17.63585 -17.21499 -16.97762 -16.56057 -16.48411 -16.30894 -16.02898 -15.71520 -15.58758 -15.33526 -15.00214 -14.77570 -14.16882 -14.06439 -13.99349 -13.64533 -13.42491 -13.04243 -12.94970 -12.84505 -12.80591 -12.60878 -12.50366 -12.25280 -12.17967 -12.07051 -12.00608 -11.79577 -11.53869 -11.38496 -11.30157 -10.99511 -10.71427 -10.51551 -9.82634 -9.64003 -8.85121 -8.32140 -7.81128 -5.17272 -0.20391 0.28124 1.38168 1.48917 1.50210 1.58797 1.68789 2.38847 2.50338 2.55241 2.80598 3.13040 3.38686 3.60930 3.76344 3.86696 3.92381 3.95846 4.03685 4.12228 4.14888 4.29338 4.30715 4.38444 4.43399 4.52958 4.61042 4.64878 4.78396 4.82471 4.88252 4.93432 4.95309 5.01260 5.08883 5.13876 5.23313 5.26947 5.29101 5.33931 5.39389 5.51118 5.58000 5.62142 5.66508 5.71487 5.87895 5.91580 6.20080 6.32268 6.85070 7.06443 7.51314 7.79025 8.52078 9.30689 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003910 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.359182 B = 7158.523900 C = 8445.877527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.062 4.062 3 Si 0.974 3.026 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.129 4.129 12 C 0.142 3.858 13 N -0.687 5.687 14 C 0.587 3.413 15 O -0.591 6.591 16 C -0.284 4.284 17 C -0.119 4.119 18 C -0.059 4.059 19 N -0.342 5.342 20 C 0.046 3.954 21 C -0.144 4.144 22 C -0.096 4.096 23 C -0.124 4.124 24 C 0.098 3.902 25 C -0.110 4.110 26 C -0.102 4.102 27 C -0.108 4.108 28 C 0.146 3.854 29 H 0.018 0.982 30 H 0.244 0.756 31 H 0.002 0.998 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.399 0.601 36 H 0.151 0.849 37 H 0.211 0.789 38 H 0.205 0.795 39 H 0.191 0.809 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -11.964 -18.110 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.255 4.255 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.361 4.361 8 H 0.106 0.894 9 N -0.320 5.320 10 C 0.068 3.932 11 C -0.168 4.168 12 C 0.054 3.946 13 N -0.336 5.336 14 C 0.378 3.622 15 O -0.475 6.475 16 C -0.293 4.293 17 C -0.141 4.141 18 C -0.183 4.183 19 N -0.006 5.006 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.012 4.012 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.146 4.146 28 C 0.037 3.963 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.169 0.831 37 H 0.227 0.773 38 H 0.222 0.778 39 H 0.209 0.791 40 H 0.182 0.818 41 H 0.151 0.849 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.079 0.921 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.314 -12.314 -18.092 21.925 hybrid contribution 0.129 1.769 0.631 1.882 sum 1.443 -10.545 -17.461 20.449 Atomic orbital electron populations 1.70156 1.06435 1.25097 1.58297 1.25578 0.96326 1.00819 1.02737 0.85136 0.77614 0.79446 0.77472 1.21103 1.22833 1.19387 1.19397 0.90854 0.83124 1.42698 0.89399 1.43783 1.01787 1.00406 1.85982 1.21653 0.83451 0.90618 0.97469 1.22656 0.97254 0.96977 0.99913 1.21433 0.96222 0.95339 0.81607 1.45440 1.50772 1.30652 1.06723 1.17278 0.78065 0.82346 0.84465 1.90655 1.44840 1.28191 1.83829 1.19486 1.13407 1.03999 0.92442 1.21243 1.00684 0.97210 0.94934 1.22133 1.03304 0.96497 0.96385 1.41786 1.31890 1.19699 1.07181 1.22592 0.98086 1.00036 0.86691 1.21330 0.99045 0.94334 1.01644 1.21578 0.98546 1.00506 0.91045 1.20847 0.97628 0.95555 1.00285 1.18792 1.00714 0.95135 0.86589 1.21884 0.96007 0.94424 1.02560 1.22791 0.94392 0.94142 1.02656 1.21878 0.96030 0.96041 1.00688 1.21046 0.94299 0.85385 0.95534 0.96435 0.94630 0.97986 0.95296 0.92856 0.90084 0.76568 0.83130 0.77277 0.77777 0.79147 0.81774 0.84894 0.90250 0.91555 0.89596 0.91004 0.92107 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.55 21.65 0.23 -57.08 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.23 -12.55 10.29 84.03 0.86 -11.68 16 8 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.60 -30.14 3.06 -668.41 -2.04 -32.18 16 10 C 0.19 10.00 5.35 86.96 0.47 10.46 16 11 C -0.13 -5.59 6.32 31.43 0.20 -5.39 16 12 C 0.14 5.59 0.43 4.34 0.00 5.59 16 13 N -0.69 -27.38 4.33 -423.88 -1.84 -29.22 16 14 C 0.59 23.73 7.21 86.31 0.62 24.36 16 15 O -0.59 -25.89 13.86 -4.60 -0.06 -25.96 16 16 C -0.28 -10.16 6.20 -19.76 -0.12 -10.28 16 17 C -0.12 -3.62 10.27 22.28 0.23 -3.40 16 18 C -0.06 -1.38 11.53 83.04 0.96 -0.42 16 19 N -0.34 -8.05 2.92 -346.29 -1.01 -9.06 16 20 C 0.05 0.66 10.89 83.19 0.91 1.57 16 21 C -0.14 -1.73 9.98 22.03 0.22 -1.51 16 22 C -0.10 -1.66 10.09 22.33 0.23 -1.43 16 23 C -0.12 -3.39 9.72 22.33 0.22 -3.17 16 24 C 0.10 3.05 6.70 39.43 0.26 3.31 16 25 C -0.11 -3.68 5.96 30.94 0.18 -3.50 16 26 C -0.10 -2.88 6.96 32.77 0.23 -2.65 16 27 C -0.11 -3.62 6.47 31.05 0.20 -3.42 16 28 C 0.15 6.05 2.62 46.50 0.12 6.17 16 29 H 0.02 0.77 7.98 -2.39 -0.02 0.75 16 30 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.00 0.11 7.98 -2.39 -0.02 0.09 16 32 H 0.03 1.69 7.04 -2.39 -0.02 1.68 16 33 H 0.05 2.41 7.90 -2.39 -0.02 2.39 16 34 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 35 H 0.40 16.31 6.93 -92.70 -0.64 15.67 16 36 H 0.15 4.47 7.53 -2.91 -0.02 4.44 16 37 H 0.21 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 39 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.13 4.10 7.07 -2.91 -0.02 4.08 16 42 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.07 2.40 6.20 -2.39 -0.01 2.39 16 44 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.06 2.09 7.51 -2.39 -0.02 2.08 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -75.55 373.27 3.89 -71.65 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.34 Total: 33.08 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 6.25 Total: 1.63 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -4.66 Total: -127.55 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.55 3.89 -71.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991776521.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.370 kcal (2) G-P(sol) polarization free energy of solvation -75.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds