Wall clock time and date at job start Tue Mar 31 2020 22:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48500 * 109.47041 * 240.00341 * 3 2 1 5 5 H 1.48504 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47454 * 120.00005 * 3 2 1 7 7 C 1.38806 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47368 * 125.57866 * 0.03031 * 9 7 2 11 11 C 1.56232 * 104.46766 * 205.31666 * 10 9 7 12 12 C 1.54919 * 101.14845 * 321.88554 * 11 10 9 13 13 N 1.46501 * 112.33202 * 274.86424 * 12 11 10 14 14 C 1.34777 * 119.99969 * 295.64334 * 13 12 11 15 15 O 1.21593 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.47575 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.40235 * 119.83433 * 0.02562 * 16 14 13 18 18 C 1.36203 * 120.37969 * 179.97438 * 17 16 14 19 19 C 1.39915 * 119.95611 * 0.02562 * 18 17 16 20 20 C 1.46256 * 133.83275 * 180.02562 * 19 18 17 21 21 C 1.34451 * 107.03204 * 179.97438 * 20 19 18 22 22 N 1.36565 * 109.97818 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.06439 * 180.02562 * 22 21 20 24 24 C 1.37819 * 109.85879 * 0.02562 * 22 21 20 25 25 C 1.38684 * 133.37465 * 180.02562 * 24 22 21 26 26 C 1.53587 * 109.57096 * 149.38706 * 12 11 10 27 27 C 1.54179 * 106.69887 * 247.54534 * 26 12 11 28 28 C 1.54754 * 104.36302 * 24.13368 * 27 26 12 29 29 C 1.46983 * 125.58218 * 180.02562 * 9 7 2 30 30 H 1.09000 * 111.81566 * 300.96321 * 29 9 7 31 31 H 0.96998 * 120.00548 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.37294 * 323.50081 * 10 9 7 33 33 H 1.08998 * 110.37144 * 85.72472 * 10 9 7 34 34 H 1.08993 * 110.32128 * 204.37025 * 11 10 9 35 35 H 1.08998 * 112.19149 * 80.19648 * 11 10 9 36 36 H 0.97004 * 119.99784 * 115.64114 * 13 12 11 37 37 H 1.07996 * 119.81348 * 359.97438 * 17 16 14 38 38 H 1.07999 * 120.02296 * 179.97438 * 18 17 16 39 39 H 1.08005 * 126.48283 * 0.02562 * 20 19 18 40 40 H 1.07999 * 125.01384 * 180.26554 * 21 20 19 41 41 H 1.07995 * 120.16923 * 359.97438 * 25 24 22 42 42 H 1.08999 * 110.01716 * 6.00588 * 26 12 11 43 43 H 1.09006 * 110.01586 * 127.39627 * 26 12 11 44 44 H 1.08997 * 109.97800 * 265.60178 * 27 26 12 45 45 H 1.08994 * 110.91443 * 143.13531 * 27 26 12 46 46 H 1.08999 * 110.67069 * 204.24145 * 28 27 26 47 47 H 1.09003 * 110.81720 * 81.17011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1410 -2.5314 -0.0006 11 6 -0.3965 -3.9303 0.6463 12 6 0.7723 -4.7540 0.0501 13 7 0.4513 -5.3005 -1.2707 14 6 -0.5358 -6.2086 -1.4025 15 8 -1.1596 -6.5747 -0.4251 16 6 -0.8595 -6.7586 -2.7331 17 6 -0.1374 -6.3343 -3.8579 18 6 -0.4264 -6.8351 -5.0911 19 6 -1.4494 -7.7779 -5.2402 20 6 -2.0035 -8.4987 -6.3858 21 6 -2.9877 -9.2858 -5.9173 22 7 -3.1089 -9.1272 -4.5663 23 1 -3.7509 -9.5908 -4.0061 24 6 -2.1830 -8.2101 -4.1177 25 6 -1.8825 -7.6945 -2.8658 26 6 1.1919 -5.8463 1.0450 27 6 2.6051 -5.4769 1.5385 28 6 2.6979 -3.9467 1.3266 29 6 1.9334 -3.7263 -0.0005 30 1 2.5749 -3.8799 -0.8683 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5986 -1.7507 0.6071 33 1 -0.5260 -2.4925 -1.0196 34 1 -1.3585 -4.3272 0.3223 35 1 -0.3359 -3.8981 1.7341 36 1 0.9493 -5.0086 -2.0504 37 1 0.6525 -5.6064 -3.7457 38 1 0.1331 -6.5040 -5.9535 39 1 -1.6823 -8.4152 -7.4136 40 1 -3.5908 -9.9489 -6.5198 41 1 -2.4371 -8.0190 -1.9978 42 1 0.5069 -5.8620 1.8927 43 1 1.1977 -6.8182 0.5514 44 1 3.3555 -5.9915 0.9384 45 1 2.7259 -5.7242 2.5931 46 1 3.7375 -3.6343 1.2283 47 1 2.2126 -3.4124 2.1434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992293152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:29 Heat of formation + Delta-G solvation = 55.129190 kcal Electronic energy + Delta-G solvation = -29496.043730 eV Core-core repulsion = 25644.666540 eV Total energy + Delta-G solvation = -3851.377190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42982 -40.12921 -38.27806 -36.49437 -34.22123 -33.41684 -32.11634 -31.40297 -30.08114 -29.41526 -28.89659 -26.70001 -25.95867 -23.83965 -23.49474 -22.65283 -20.96555 -20.92817 -19.97167 -19.54566 -18.76936 -18.27567 -17.05234 -16.86230 -16.18684 -15.58634 -15.00638 -14.97158 -14.80214 -14.40695 -14.09669 -13.97665 -13.88326 -13.52905 -13.44720 -13.27975 -13.00915 -12.73901 -12.16476 -12.02630 -11.85946 -11.67314 -11.53673 -11.11504 -11.09603 -10.95745 -10.82059 -10.65200 -10.49711 -10.13987 -10.04203 -9.92836 -9.91628 -9.70194 -9.58717 -9.34222 -8.63502 -8.55193 -8.36620 -7.92207 -6.83111 -5.61627 -3.05149 0.71878 1.36967 2.40136 2.83655 3.15734 3.41276 3.45562 3.47135 3.51516 3.97116 4.49466 4.50532 4.63398 4.80426 4.97326 4.99419 5.15490 5.21090 5.24709 5.35688 5.39134 5.54052 5.54995 5.69541 5.72714 5.85623 5.88044 5.91584 6.04229 6.12002 6.18978 6.24726 6.32343 6.38433 6.38882 6.43743 6.45968 6.53007 6.58994 6.63633 6.82412 6.82667 6.92330 7.03336 7.17927 7.25025 7.58537 7.66807 7.87292 7.92533 8.39622 8.55759 9.24100 9.85124 10.49623 11.40565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002922 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.722447 B = 9579.624494 C =10550.328305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.595 5.595 10 C 0.153 3.847 11 C -0.142 4.142 12 C 0.161 3.839 13 N -0.698 5.698 14 C 0.559 3.441 15 O -0.539 6.539 16 C -0.110 4.110 17 C -0.111 4.111 18 C -0.080 4.080 19 C -0.090 4.090 20 C -0.210 4.210 21 C 0.056 3.944 22 N -0.593 5.593 23 H 0.417 0.583 24 C 0.080 3.920 25 C -0.063 4.063 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.129 4.129 29 C 0.162 3.838 30 H 0.045 0.955 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.012 0.988 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -19.112 -9.584 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.181 4.181 12 C 0.075 3.925 13 N -0.348 5.348 14 C 0.347 3.653 15 O -0.418 6.418 16 C -0.115 4.115 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.095 4.095 20 C -0.236 4.236 21 C -0.071 4.071 22 N -0.196 5.196 23 H 0.253 0.747 24 C -0.026 4.026 25 C -0.084 4.084 26 C -0.149 4.149 27 C -0.162 4.162 28 C -0.169 4.169 29 C 0.053 3.947 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.165 0.835 40 H 0.188 0.812 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.619 -19.159 -8.831 21.404 hybrid contribution 0.349 0.760 -0.335 0.901 sum -3.269 -18.399 -9.166 20.814 Atomic orbital electron populations 1.69794 1.04858 1.24810 1.57414 1.24777 0.95663 0.97645 1.02479 0.86182 0.78390 0.83240 0.77833 1.21300 1.21670 1.21204 1.18987 0.90404 0.82327 1.43151 0.90584 1.44500 1.01859 0.99140 1.86440 1.22227 0.84260 0.92862 0.97826 1.23547 0.96685 0.98152 0.99729 1.21661 0.96795 0.92455 0.81607 1.45821 1.36014 1.42395 1.10551 1.18046 0.79980 0.79228 0.88089 1.90747 1.51022 1.60434 1.39598 1.19633 0.98496 0.99722 0.93633 1.20801 1.00091 1.00364 0.91857 1.20175 0.96392 0.95897 0.97355 1.19385 0.97876 0.99376 0.92837 1.21731 1.01052 1.02620 0.98166 1.21866 1.00410 1.01667 0.83165 1.41766 1.32180 1.37844 1.07789 0.74653 1.18093 0.94077 0.95617 0.94802 1.20061 0.97453 0.96505 0.94422 1.22239 0.96626 0.97612 0.98422 1.22345 0.96487 0.97242 1.00153 1.22902 1.00318 0.93915 0.99776 1.21776 0.91609 0.85864 0.95403 0.93766 0.93718 0.87576 0.96967 0.91701 0.91258 0.76533 0.85409 0.85434 0.83489 0.81188 0.84843 0.91313 0.92140 0.92452 0.92215 0.92346 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.07 55.49 0.56 -26.13 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.94 10.03 -15.06 -0.15 -6.09 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.67 3.07 -160.29 -0.49 -15.16 16 10 C 0.15 3.77 5.96 -1.83 -0.01 3.76 16 11 C -0.14 -2.96 5.85 -23.98 -0.14 -3.10 16 12 C 0.16 2.96 0.71 -129.37 -0.09 2.87 16 13 N -0.70 -11.57 5.18 -46.36 -0.24 -11.81 16 14 C 0.56 9.39 6.91 -12.45 -0.09 9.30 16 15 O -0.54 -10.41 14.19 5.28 0.07 -10.33 16 16 C -0.11 -1.58 5.87 -104.95 -0.62 -2.20 16 17 C -0.11 -1.38 9.46 -39.56 -0.37 -1.76 16 18 C -0.08 -0.90 10.03 -39.69 -0.40 -1.30 16 19 C -0.09 -1.04 6.37 -105.05 -0.67 -1.71 16 20 C -0.21 -1.89 11.08 -37.70 -0.42 -2.31 16 21 C 0.06 0.40 11.81 -16.78 -0.20 0.21 16 22 N -0.59 -4.95 6.07 -10.69 -0.06 -5.01 16 23 H 0.42 2.29 8.96 -40.82 -0.37 1.92 16 24 C 0.08 0.94 7.26 -84.00 -0.61 0.33 16 25 C -0.06 -0.83 9.61 -39.03 -0.37 -1.21 16 26 C -0.11 -1.84 5.24 -25.81 -0.14 -1.97 16 27 C -0.12 -1.89 6.83 -25.19 -0.17 -2.06 16 28 C -0.13 -2.34 6.27 -24.89 -0.16 -2.50 16 29 C 0.16 3.25 3.59 -65.62 -0.24 3.01 16 30 H 0.04 0.87 7.99 -51.93 -0.42 0.46 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.11 2.96 5.83 -51.93 -0.30 2.66 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 1.38 6.82 -51.93 -0.35 1.03 16 35 H 0.07 1.44 7.65 -51.93 -0.40 1.04 16 36 H 0.40 5.95 6.49 -40.82 -0.27 5.68 16 37 H 0.13 1.41 6.36 -52.49 -0.33 1.07 16 38 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 1.73 7.62 -52.49 -0.40 1.33 16 42 H 0.07 1.18 7.41 -51.93 -0.38 0.80 16 43 H 0.06 1.00 7.40 -51.93 -0.38 0.61 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 1.50 8.11 -51.93 -0.42 1.08 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.67 371.34 -11.05 -43.72 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.53 Total: 9.39 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.93 Total: -7.12 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.24 Total: -58.12 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.67 -11.05 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992293152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.852 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds