Wall clock time and date at job start Tue Mar 31 2020 22:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48500 * 109.47041 * 240.00341 * 3 2 1 5 5 H 1.48504 * 109.47161 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47454 * 120.00005 * 3 2 1 7 7 C 1.38806 * 120.00461 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47368 * 125.57866 * 0.03031 * 9 7 2 11 11 C 1.56232 * 104.46766 * 205.31666 * 10 9 7 12 12 C 1.54919 * 101.14845 * 321.88554 * 11 10 9 13 13 N 1.46501 * 112.33202 * 274.86424 * 12 11 10 14 14 C 1.34777 * 119.99969 * 295.64334 * 13 12 11 15 15 O 1.21593 * 120.00028 * 359.97438 * 14 13 12 16 16 C 1.47575 * 119.99767 * 179.97438 * 14 13 12 17 17 C 1.40235 * 119.83433 * 0.02562 * 16 14 13 18 18 C 1.36203 * 120.37969 * 179.97438 * 17 16 14 19 19 C 1.39915 * 119.95611 * 0.02562 * 18 17 16 20 20 C 1.46256 * 133.83275 * 180.02562 * 19 18 17 21 21 C 1.34451 * 107.03204 * 179.97438 * 20 19 18 22 22 N 1.36565 * 109.97818 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.06439 * 180.02562 * 22 21 20 24 24 C 1.37819 * 109.85879 * 0.02562 * 22 21 20 25 25 C 1.38684 * 133.37465 * 180.02562 * 24 22 21 26 26 C 1.53587 * 109.57096 * 149.38706 * 12 11 10 27 27 C 1.54179 * 106.69887 * 247.54534 * 26 12 11 28 28 C 1.54754 * 104.36302 * 24.13368 * 27 26 12 29 29 C 1.46983 * 125.58218 * 180.02562 * 9 7 2 30 30 H 1.09000 * 111.81566 * 300.96321 * 29 9 7 31 31 H 0.96998 * 120.00548 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.37294 * 323.50081 * 10 9 7 33 33 H 1.08998 * 110.37144 * 85.72472 * 10 9 7 34 34 H 1.08993 * 110.32128 * 204.37025 * 11 10 9 35 35 H 1.08998 * 112.19149 * 80.19648 * 11 10 9 36 36 H 0.97004 * 119.99784 * 115.64114 * 13 12 11 37 37 H 1.07996 * 119.81348 * 359.97438 * 17 16 14 38 38 H 1.07999 * 120.02296 * 179.97438 * 18 17 16 39 39 H 1.08005 * 126.48283 * 0.02562 * 20 19 18 40 40 H 1.07999 * 125.01384 * 180.26554 * 21 20 19 41 41 H 1.07995 * 120.16923 * 359.97438 * 25 24 22 42 42 H 1.08999 * 110.01716 * 6.00588 * 26 12 11 43 43 H 1.09006 * 110.01586 * 127.39627 * 26 12 11 44 44 H 1.08997 * 109.97800 * 265.60178 * 27 26 12 45 45 H 1.08994 * 110.91443 * 143.13531 * 27 26 12 46 46 H 1.08999 * 110.67069 * 204.24145 * 28 27 26 47 47 H 1.09003 * 110.81720 * 81.17011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1410 -2.5314 -0.0006 11 6 -0.3965 -3.9303 0.6463 12 6 0.7723 -4.7540 0.0501 13 7 0.4513 -5.3005 -1.2707 14 6 -0.5358 -6.2086 -1.4025 15 8 -1.1596 -6.5747 -0.4251 16 6 -0.8595 -6.7586 -2.7331 17 6 -0.1374 -6.3343 -3.8579 18 6 -0.4264 -6.8351 -5.0911 19 6 -1.4494 -7.7779 -5.2402 20 6 -2.0035 -8.4987 -6.3858 21 6 -2.9877 -9.2858 -5.9173 22 7 -3.1089 -9.1272 -4.5663 23 1 -3.7509 -9.5908 -4.0061 24 6 -2.1830 -8.2101 -4.1177 25 6 -1.8825 -7.6945 -2.8658 26 6 1.1919 -5.8463 1.0450 27 6 2.6051 -5.4769 1.5385 28 6 2.6979 -3.9467 1.3266 29 6 1.9334 -3.7263 -0.0005 30 1 2.5749 -3.8799 -0.8683 31 1 -0.4851 0.8400 -0.0004 32 1 -0.5986 -1.7507 0.6071 33 1 -0.5260 -2.4925 -1.0196 34 1 -1.3585 -4.3272 0.3223 35 1 -0.3359 -3.8981 1.7341 36 1 0.9493 -5.0086 -2.0504 37 1 0.6525 -5.6064 -3.7457 38 1 0.1331 -6.5040 -5.9535 39 1 -1.6823 -8.4152 -7.4136 40 1 -3.5908 -9.9489 -6.5198 41 1 -2.4371 -8.0190 -1.9978 42 1 0.5069 -5.8620 1.8927 43 1 1.1977 -6.8182 0.5514 44 1 3.3555 -5.9915 0.9384 45 1 2.7259 -5.7242 2.5931 46 1 3.7375 -3.6343 1.2283 47 1 2.2126 -3.4124 2.1434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992293152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:28 Heat of formation + Delta-G solvation = 35.574725 kcal Electronic energy + Delta-G solvation = -29496.891676 eV Core-core repulsion = 25644.666540 eV Total energy + Delta-G solvation = -3852.225136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25043 -41.53144 -39.67127 -37.49169 -36.03345 -34.79222 -33.30276 -32.94745 -31.62518 -30.37752 -29.89206 -28.42311 -27.45651 -25.73919 -24.57772 -23.56321 -22.47450 -21.62489 -21.56760 -20.89141 -20.21028 -19.25404 -18.87170 -18.03784 -17.23348 -16.90424 -16.80845 -16.19671 -16.14908 -15.69987 -15.34042 -15.04718 -14.98240 -14.88577 -14.69306 -14.48126 -14.26577 -13.91071 -13.86919 -13.51367 -13.20105 -12.93282 -12.81668 -12.75436 -12.62985 -12.55212 -12.32170 -12.06336 -12.01790 -11.90467 -11.69360 -11.54071 -11.46355 -11.23452 -10.82394 -10.76385 -10.70476 -9.97804 -9.27635 -8.85594 -8.69844 -7.71530 -5.16889 -0.22989 0.46780 1.48961 1.51783 1.57886 1.63650 2.00187 2.08953 2.36588 2.52957 2.95619 3.36258 3.38172 3.65406 3.71188 3.80556 3.95485 3.96235 3.99645 4.16794 4.30770 4.36401 4.37515 4.41769 4.48076 4.58392 4.63246 4.69456 4.72409 4.82168 4.90090 4.96624 5.01271 5.03209 5.09911 5.17639 5.23336 5.30107 5.34720 5.48526 5.49343 5.52350 5.64923 5.65815 5.71838 5.77209 5.84866 6.10053 6.32217 6.58573 6.66614 7.13336 7.24382 7.81872 8.46439 9.29534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015167 B = 0.002922 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.722447 B = 9579.624494 C =10550.328305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.225 4.225 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.163 3.837 11 C -0.129 4.129 12 C 0.169 3.831 13 N -0.696 5.696 14 C 0.560 3.440 15 O -0.571 6.571 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.233 4.233 21 C 0.079 3.921 22 N -0.586 5.586 23 H 0.430 0.570 24 C 0.062 3.938 25 C -0.068 4.068 26 C -0.104 4.104 27 C -0.109 4.109 28 C -0.124 4.124 29 C 0.154 3.846 30 H 0.056 0.944 31 H 0.244 0.756 32 H 0.071 0.929 33 H -0.015 1.015 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.168 0.832 40 H 0.217 0.783 41 H 0.127 0.873 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.933 -21.388 -11.276 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.353 4.353 8 H 0.104 0.896 9 N -0.334 5.334 10 C 0.038 3.962 11 C -0.169 4.169 12 C 0.083 3.917 13 N -0.346 5.346 14 C 0.349 3.651 15 O -0.452 6.452 16 C -0.141 4.141 17 C -0.138 4.138 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.257 4.257 21 C -0.049 4.049 22 N -0.190 5.190 23 H 0.269 0.731 24 C -0.046 4.046 25 C -0.089 4.089 26 C -0.143 4.143 27 C -0.147 4.147 28 C -0.164 4.164 29 C 0.047 3.953 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.002 0.998 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.233 0.767 41 H 0.145 0.855 42 H 0.080 0.920 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.496 -21.479 -10.530 24.051 hybrid contribution -0.091 1.356 0.074 1.361 sum -2.587 -20.123 -10.456 22.824 Atomic orbital electron populations 1.70060 1.06328 1.24801 1.59055 1.25602 0.96458 1.00942 1.03196 0.85152 0.77015 0.78974 0.78192 1.20364 1.22594 1.20309 1.19381 0.91026 0.83270 1.41661 0.89621 1.44678 1.01860 1.00503 1.86403 1.21867 0.84642 0.93918 0.95755 1.23349 0.97604 0.96444 0.99490 1.21509 0.94706 0.92646 0.82875 1.45757 1.36366 1.42347 1.10175 1.18436 0.79197 0.78612 0.88845 1.90714 1.52027 1.61586 1.40888 1.19477 1.00361 1.01468 0.92757 1.20892 1.00285 1.00766 0.91856 1.20454 0.96520 0.95614 0.97550 1.19854 0.97661 0.99263 0.93999 1.22087 1.01904 1.03132 0.98563 1.22641 0.99296 1.00439 0.82503 1.41906 1.31531 1.36863 1.08661 0.73093 1.18128 0.95369 0.96773 0.94296 1.20064 0.97213 0.96502 0.95138 1.22176 0.97593 0.96966 0.97558 1.22284 0.95776 0.94715 1.01912 1.22766 1.00085 0.96106 0.97412 1.22034 0.92398 0.83953 0.96927 0.92607 0.94627 0.91114 0.99752 0.92521 0.91293 0.75609 0.84635 0.83177 0.81427 0.76658 0.85484 0.92004 0.91613 0.90134 0.90143 0.91327 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.59 10.07 21.65 0.22 -57.37 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.22 -12.23 10.03 84.03 0.84 -11.39 16 8 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 9 N -0.61 -30.75 3.07 -661.03 -2.03 -32.78 16 10 C 0.16 8.49 5.96 87.34 0.52 9.01 16 11 C -0.13 -5.63 5.85 32.37 0.19 -5.44 16 12 C 0.17 6.25 0.71 5.19 0.00 6.26 16 13 N -0.70 -23.36 5.18 -418.85 -2.17 -25.53 16 14 C 0.56 19.28 6.91 86.71 0.60 19.88 16 15 O -0.57 -22.71 14.19 -4.01 -0.06 -22.77 16 16 C -0.14 -3.99 5.87 -20.08 -0.12 -4.11 16 17 C -0.12 -2.93 9.46 22.28 0.21 -2.72 16 18 C -0.08 -1.80 10.03 22.20 0.22 -1.58 16 19 C -0.10 -2.22 6.37 -20.14 -0.13 -2.34 16 20 C -0.23 -3.48 11.08 23.49 0.26 -3.22 16 21 C 0.08 0.83 11.81 83.09 0.98 1.81 16 22 N -0.59 -8.37 6.07 -187.72 -1.14 -9.51 16 23 H 0.43 3.72 8.96 -92.71 -0.83 2.89 16 24 C 0.06 1.38 7.26 38.96 0.28 1.66 16 25 C -0.07 -1.82 9.61 22.63 0.22 -1.61 16 26 C -0.10 -3.35 5.24 31.19 0.16 -3.19 16 27 C -0.11 -3.02 6.83 31.59 0.22 -2.81 16 28 C -0.12 -4.33 6.27 31.79 0.20 -4.13 16 29 C 0.15 6.11 3.59 46.22 0.17 6.28 16 30 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 31 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.07 4.20 5.83 -2.39 -0.01 4.19 16 33 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.06 2.54 6.82 -2.39 -0.02 2.52 16 35 H 0.07 2.97 7.65 -2.39 -0.02 2.95 16 36 H 0.41 12.20 6.49 -92.71 -0.60 11.60 16 37 H 0.14 2.98 6.36 -2.91 -0.02 2.96 16 38 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 40 H 0.22 0.23 8.06 -2.91 -0.02 0.20 16 41 H 0.13 3.44 7.62 -2.91 -0.02 3.41 16 42 H 0.06 2.08 7.41 -2.39 -0.02 2.07 16 43 H 0.07 2.08 7.40 -2.38 -0.02 2.06 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -73.82 371.34 1.73 -72.09 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.42 Total: 29.30 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: 5.29 Total: -1.11 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -5.12 Total: -125.19 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.82 1.73 -72.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992293152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.660 kcal (2) G-P(sol) polarization free energy of solvation -73.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds