Wall clock time and date at job start Tue Mar 31 2020 22:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47000 * 300.00053 * 3 2 1 6 6 H 1.48500 * 109.47497 * 60.00190 * 3 2 1 7 7 C 1.38816 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00084 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99945 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99931 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.46091 * 205.00058 * 10 9 7 12 12 C 1.53196 * 109.31646 * 178.62620 * 11 10 9 13 13 N 1.46928 * 108.76857 * 54.63486 * 12 11 10 14 14 C 1.34774 * 120.62675 * 126.37717 * 13 12 11 15 15 O 1.21552 * 120.00317 * 3.78281 * 14 13 12 16 16 C 1.47860 * 120.00045 * 183.79139 * 14 13 12 17 17 C 1.39609 * 120.11409 * 309.36480 * 16 14 13 18 18 C 1.37975 * 119.98816 * 180.27294 * 17 16 14 19 19 C 1.38267 * 120.21725 * 359.97438 * 18 17 16 20 20 C 1.38906 * 120.22299 * 0.02562 * 19 18 17 21 21 N 1.40223 * 119.98783 * 180.02562 * 20 19 18 22 22 C 1.36567 * 125.66774 * 179.67023 * 21 20 19 23 23 C 1.34848 * 108.20119 * 179.86708 * 22 21 20 24 24 C 1.40937 * 107.47030 * 0.38646 * 23 22 21 25 25 C 1.34852 * 107.46321 * 359.75907 * 24 23 22 26 26 C 1.38580 * 120.01553 * 359.97438 * 20 19 18 27 27 C 1.46928 * 118.74180 * 306.64044 * 13 12 11 28 28 C 1.52766 * 109.00265 * 53.31759 * 27 13 12 29 29 H 0.96997 * 119.99768 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00067 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.45696 * 324.97746 * 10 9 7 32 32 H 1.09001 * 109.49746 * 58.67521 * 11 10 9 33 33 H 1.09001 * 109.49817 * 298.58245 * 11 10 9 34 34 H 1.08994 * 109.58390 * 294.85162 * 12 11 10 35 35 H 1.08993 * 109.70495 * 174.48874 * 12 11 10 36 36 H 1.08006 * 120.00677 * 0.29921 * 17 16 14 37 37 H 1.08003 * 119.88801 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.88494 * 179.97438 * 19 18 17 39 39 H 1.08006 * 125.89850 * 0.02562 * 22 21 20 40 40 H 1.08005 * 126.26162 * 180.15065 * 23 22 21 41 41 H 1.07994 * 126.26690 * 179.77409 * 24 23 22 42 42 H 1.08004 * 125.89606 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.11064 * 179.97438 * 26 20 19 44 44 H 1.08999 * 109.58610 * 173.14608 * 27 13 12 45 45 H 1.08995 * 109.58981 * 293.57826 * 27 13 12 46 46 H 1.09001 * 109.56269 * 185.55348 * 28 27 13 47 47 H 1.08991 * 109.36191 * 65.49655 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.1804 -4.7523 -0.6103 12 6 1.9617 -6.0696 -0.6402 13 7 2.4409 -6.3659 0.7168 14 6 2.1720 -7.5527 1.2961 15 8 1.5873 -8.4156 0.6708 16 6 2.5882 -7.8051 2.6922 17 6 3.9037 -7.5548 3.0872 18 6 4.2906 -7.7966 4.3893 19 6 3.3792 -8.2862 5.3066 20 6 2.0681 -8.5384 4.9233 21 7 1.1478 -9.0343 5.8578 22 6 -0.1653 -9.3161 5.6099 23 6 -0.7204 -9.7738 6.7504 24 6 0.2818 -9.7670 7.7413 25 6 1.4140 -9.3104 7.1685 26 6 1.6693 -8.2989 3.6179 27 6 3.2137 -5.3416 1.4325 28 6 2.4229 -4.0345 1.4370 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9685 -3.5505 -0.5904 32 1 0.9015 -4.4716 -1.6260 33 1 0.2812 -4.8761 -0.0068 34 1 2.8120 -5.9748 -1.3154 35 1 1.3116 -6.8749 -0.9820 36 1 4.6182 -7.1716 2.3737 37 1 5.3088 -7.6028 4.6930 38 1 3.6880 -8.4739 6.3244 39 1 -0.6710 -9.1958 4.6632 40 1 -1.7464 -10.0847 6.8815 41 1 0.1645 -10.0718 8.7706 42 1 2.3667 -9.1844 7.6614 43 1 0.6504 -8.4949 3.3181 44 1 3.3873 -5.6655 2.4587 45 1 4.1682 -5.1862 0.9297 46 1 3.0286 -3.2430 1.8784 47 1 1.5122 -4.1652 2.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996780399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:51 Heat of formation + Delta-G solvation = 67.290161 kcal Electronic energy + Delta-G solvation = -28597.202710 eV Core-core repulsion = 24746.352859 eV Total energy + Delta-G solvation = -3850.849851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91441 -40.54432 -38.68667 -37.38598 -34.62650 -33.61537 -32.24906 -31.71083 -30.82262 -29.43137 -29.11631 -28.95516 -25.46762 -23.97930 -23.63230 -22.91018 -22.44916 -21.02668 -20.32050 -20.07750 -19.40364 -18.39669 -17.14922 -16.93090 -16.51385 -16.07389 -15.69113 -15.23407 -14.87727 -14.83480 -14.60582 -14.16188 -13.87671 -13.86154 -13.71455 -13.52901 -13.47032 -13.01096 -12.93976 -12.60949 -12.52484 -12.32113 -12.07401 -12.00328 -11.80827 -11.57495 -11.02947 -10.94293 -10.86819 -10.55955 -10.25250 -10.18497 -9.95041 -9.86947 -9.71793 -9.41603 -8.96347 -8.61779 -8.52080 -8.31000 -7.02797 -5.82301 -3.11789 0.45746 0.71883 2.08266 2.41689 2.65012 2.74600 2.94950 3.38742 3.40621 3.44152 3.46752 4.14844 4.31690 4.50427 4.53144 4.66419 4.72955 4.77838 4.90491 5.01815 5.12569 5.19822 5.25743 5.26906 5.32719 5.37678 5.45683 5.47812 5.58130 5.63720 5.65388 5.82550 5.88092 5.91193 5.93421 5.97126 6.03326 6.15622 6.23267 6.31925 6.32406 6.44058 6.53964 6.63782 6.81861 6.90272 6.97514 7.12775 7.35164 7.64034 8.03595 8.35789 9.47143 10.04269 10.38807 11.40268 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.002496 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.243636 B =11214.143437 C =11866.009303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.595 5.595 14 C 0.558 3.442 15 O -0.539 6.539 16 C -0.088 4.088 17 C -0.103 4.103 18 C -0.093 4.093 19 C -0.124 4.124 20 C 0.137 3.863 21 N -0.397 5.397 22 C -0.012 4.012 23 C -0.191 4.191 24 C -0.190 4.190 25 C -0.017 4.017 26 C -0.092 4.092 27 C 0.096 3.904 28 C -0.151 4.151 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.166 0.834 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.383 -19.959 11.553 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.327 5.327 14 C 0.346 3.654 15 O -0.418 6.418 16 C -0.092 4.092 17 C -0.122 4.122 18 C -0.112 4.112 19 C -0.144 4.144 20 C 0.045 3.955 21 N -0.069 5.069 22 C -0.139 4.139 23 C -0.215 4.215 24 C -0.214 4.214 25 C -0.143 4.143 26 C -0.112 4.112 27 C -0.027 4.027 28 C -0.193 4.193 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.183 0.817 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.155 0.845 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.372 -20.137 10.989 24.096 hybrid contribution 0.073 1.118 0.185 1.135 sum 7.445 -19.019 11.173 23.281 Atomic orbital electron populations 1.69672 1.05137 1.25615 1.57528 1.24760 0.95508 0.97747 1.02922 0.86138 0.78758 0.84175 0.77223 1.20549 1.21849 1.21871 1.19264 0.90974 0.84052 1.42831 0.91110 1.42442 1.05821 0.99694 1.88470 1.20168 0.94467 0.86115 0.92391 1.22216 0.99215 0.94002 1.02403 1.21682 0.98956 0.98209 0.81771 1.48100 1.53480 1.14265 1.16835 1.18219 0.79153 0.82259 0.85789 1.90786 1.42263 1.44309 1.64396 1.19717 0.94611 1.00998 0.93825 1.21404 0.95042 0.98891 0.96846 1.20960 0.99746 0.97938 0.92511 1.20959 0.91160 1.01390 1.00897 1.17711 0.89554 0.99350 0.88891 1.41637 1.08369 1.48579 1.08277 1.21998 0.83330 1.07392 1.01175 1.21015 1.00025 1.07588 0.92836 1.21004 0.92909 1.07592 0.99896 1.21886 1.00981 1.08214 0.83258 1.20727 1.00565 0.99454 0.90481 1.22115 0.94668 0.88776 0.97105 1.22608 1.00150 0.94665 1.01832 0.93506 0.78254 0.93340 0.90330 0.91804 0.91219 0.89228 0.84432 0.84272 0.84836 0.81683 0.84084 0.84146 0.81787 0.84500 0.89636 0.91146 0.90496 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.40 5.12 -53.38 -0.27 -17.68 16 10 C 0.18 3.30 2.73 -67.89 -0.19 3.11 16 11 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 12 C 0.12 1.60 6.43 -3.71 -0.02 1.57 16 13 N -0.59 -8.04 2.98 -174.14 -0.52 -8.56 16 14 C 0.56 8.00 7.24 -12.32 -0.09 7.91 16 15 O -0.54 -9.36 16.47 5.32 0.09 -9.27 16 16 C -0.09 -1.05 5.00 -104.99 -0.52 -1.57 16 17 C -0.10 -0.95 7.37 -39.17 -0.29 -1.24 16 18 C -0.09 -0.71 10.02 -39.67 -0.40 -1.11 16 19 C -0.12 -1.05 9.45 -39.32 -0.37 -1.42 16 20 C 0.14 1.46 6.61 -83.64 -0.55 0.90 16 21 N -0.40 -4.25 2.97 -60.96 -0.18 -4.43 16 22 C -0.01 -0.13 10.73 -16.65 -0.18 -0.31 16 23 C -0.19 -1.89 10.86 -39.76 -0.43 -2.32 16 24 C -0.19 -1.77 10.86 -39.76 -0.43 -2.20 16 25 C -0.02 -0.16 10.73 -16.64 -0.18 -0.34 16 26 C -0.09 -1.08 9.14 -39.00 -0.36 -1.44 16 27 C 0.10 1.19 5.34 -3.93 -0.02 1.17 16 28 C -0.15 -2.45 5.64 -26.83 -0.15 -2.60 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.38 9.98 7.80 -40.82 -0.32 9.67 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.27 7.02 -51.93 -0.36 0.90 16 36 H 0.14 1.06 7.06 -52.48 -0.37 0.69 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 38 H 0.13 0.82 6.69 -52.49 -0.35 0.47 16 39 H 0.17 1.51 7.01 -52.48 -0.37 1.14 16 40 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.16 1.05 7.00 -52.48 -0.37 0.68 16 43 H 0.14 1.61 6.70 -52.49 -0.35 1.26 16 44 H 0.09 0.93 4.57 -51.93 -0.24 0.69 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -32.86 381.67 -10.51 -43.37 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.50 Total: 10.22 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -4.58 Total: -9.27 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.25 Total: -57.64 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.86 -10.51 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996780399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.659 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds